Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 6.5e-99 364.0 175 100.0
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 2.5e-98 362.1 175 99.4
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 1.1e-95 353.2 175 94.9
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 1.1e-95 353.2 175 96.6
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 2.5e-95 352.1 175 96.6
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 1.6e-94 349.4 175 96.0
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 2.8e-94 348.6 175 96.0
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 6.2e-94 347.4 172 94.8
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 4.0e-93 344.7 175 93.1
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.5e-92 342.8 175 92.6
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 3.4e-92 341.7 175 92.0
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 3.4e-92 341.7 175 92.0
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 4.5e-92 341.3 175 93.1
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 4.5e-92 341.3 175 92.6
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 5.8e-92 340.9 174 92.5
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 7.6e-92 340.5 172 93.6
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 7.6e-92 340.5 174 92.5
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 1.7e-91 339.3 175 92.0
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 2.9e-91 338.6 175 92.0
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 3.8e-91 338.2 175 92.0
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 3.8e-91 338.2 173 93.1
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 3.8e-91 338.2 175 92.0
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 6.5e-91 337.4 174 91.4
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 8.4e-91 337.0 172 93.0
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 1.1e-90 336.7 175 91.4
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 1.1e-90 336.7 175 91.4
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 1.4e-90 336.3 175 92.6
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.4e-90 336.3 175 91.4
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 1.4e-90 336.3 174 90.2
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 1.9e-90 335.9 175 90.9
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 1.9e-90 335.9 172 93.0
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 3.2e-90 335.1 172 92.4
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 4.2e-90 334.7 175 89.7
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 4.2e-90 334.7 175 90.9
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 5.5e-90 334.3 174 92.0
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 1.6e-89 332.8 172 92.4
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 2.7e-89 332.0 174 89.1
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 3.5e-89 331.6 175 89.1
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 1.0e-88 330.1 174 90.2
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.0e-88 330.1 174 90.2
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 3.0e-88 328.6 173 90.2
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 3.9e-88 328.2 173 88.4
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 6.7e-88 327.4 174 89.7
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 8.7e-88 327.0 175 89.7
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 1.1e-87 326.6 174 88.5
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 1.1e-87 326.6 172 91.3
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 1.5e-87 326.2 173 87.3
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 1.5e-87 326.2 175 89.1
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 1.9e-87 325.9 172 89.0
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 3.3e-87 325.1 173 86.7
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 5.7e-87 324.3 172 87.2
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 5.7e-87 324.3 175 87.4
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 5.7e-87 324.3 174 88.5
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 7.4e-87 323.9 172 87.2
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 9.7e-87 323.6 173 86.1
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 9.7e-87 323.6 175 88.6
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 1.3e-86 323.2 175 86.3
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 1.6e-86 322.8 172 87.8
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 2.2e-86 322.4 174 90.2
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 2.2e-86 322.4 172 88.4
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 2.2e-86 322.4 171 89.5
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 2.2e-86 322.4 172 88.4
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 2.8e-86 322.0 173 86.1
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 3.7e-86 321.6 173 86.1
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 3.7e-86 321.6 173 86.1
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 3.7e-86 321.6 171 86.5
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 4.8e-86 321.2 172 86.6
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 8.2e-86 320.5 175 85.7
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 1.1e-85 320.1 172 86.0
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 1.1e-85 320.1 175 85.1
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 1.4e-85 319.7 172 86.0
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 1.4e-85 319.7 172 86.0
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 1.4e-85 319.7 174 86.2
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 1.4e-85 319.7 173 86.1
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 2.4e-85 318.9 172 88.4
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 3.1e-85 318.5 175 86.3
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 3.1e-85 318.5 174 86.8
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 3.1e-85 318.5 172 87.2
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 5.3e-85 317.8 172 86.6
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 5.3e-85 317.8 172 85.5
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 1.2e-84 316.6 175 86.3
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 1.5e-84 316.2 172 86.0
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 3.4e-84 315.1 226 71.7
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 4.5e-84 314.7 175 85.1
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 4.5e-84 314.7 175 87.4
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 2.9e-83 312.0 190 80.0
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 6.5e-83 310.8 181 84.0
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 7.2e-82 307.4 173 82.7
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 7.2e-82 307.4 172 83.1
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 7.2e-82 307.4 172 83.1
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 7.2e-82 307.4 172 83.1
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 7.2e-82 307.4 172 83.1
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 7.9e-81 303.9 173 80.9
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.8e-80 302.8 173 80.3
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 2.3e-80 302.4 172 82.0
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 3.0e-80 302.0 159 89.9
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 5.1e-80 301.2 158 91.8
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 2.5e-79 298.9 175 80.0
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 2.8e-78 295.4 165 83.0
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 4.4e-71 271.6 138 94.9
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 1.7e-70 269.6 151 85.4
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 2.8e-70 268.9 149 87.2
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 8.2e-70 267.3 146 87.0
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 2.4e-69 265.8 174 69.5
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 7.0e-69 264.2 176 71.0
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 1.2e-68 263.5 174 67.2
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 2.0e-68 262.7 182 74.7
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 1.9e-66 256.1 147 84.4
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 3.2e-66 255.4 174 66.1
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 7.2e-66 254.2 127 94.5
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 3.9e-64 248.4 126 93.7
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 2.2e-62 242.7 130 89.2
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 3.1e-61 238.8 172 70.3
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 4.1e-61 238.4 128 88.3
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 4.1e-61 238.4 133 85.7
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 4.5e-60 235.0 176 65.3
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 7.7e-60 234.2 134 85.1
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 3.8e-59 231.9 130 85.4
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 3.8e-59 231.9 130 85.4
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 5.0e-59 231.5 127 85.0
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 4.2e-58 228.4 127 82.7
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 1.2e-57 226.9 147 80.3
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 2.1e-57 226.1 129 82.9
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.0e-56 221.9 163 70.6
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 2.3e-48 196.1 131 77.1
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 2.3e-48 196.1 132 72.0
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 8.8e-48 194.1 128 75.0
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 4.5e-44 181.8 130 67.7
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 5.6e-42 174.9 92 92.4
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 1.0e-40 170.6 96 87.5
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.0e-40 168.7 91 91.2
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.2e-38 162.9 92 88.0
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.9e-38 161.8 95 86.3
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 8.3e-38 161.0 104 77.9
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 8.3e-38 161.0 90 90.0
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 7.0e-37 157.9 95 82.1
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.9e-34 149.8 80 86.2
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 1.9e-34 149.8 88 81.8
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 2.5e-34 149.4 93 75.3
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 2.3e-32 142.9 75 92.0
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.9e-29 133.3 77 85.7
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 9.2e-29 131.0 99 63.6
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 2.3e-27 126.3 80 76.2
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 8.6e-27 124.4 192 35.4
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 5.2e-24 115.2 67 73.1
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 2.7e-20 102.8 89 59.6
Cc06_g07800 Coffea canephora HOM05D005237 ORTHO05D006189 3.3e-18 95.9 57 77.2
Lsat_1_v5_gn_2_45981 Lactuca sativa HOM05D005237 ORTHO05D003224 8.6e-11 71.2 37 75.7


User provided reference genes

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