Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 7.3e-36 153.3 74 100.0
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 4.6e-30 134.0 74 86.5
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.7e-29 132.1 74 82.4
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.7e-29 132.1 74 82.4
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 1.7e-29 132.1 74 82.4
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 2.3e-29 131.7 72 87.5
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 3.0e-29 131.3 72 88.9
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 3.0e-29 131.3 74 82.4
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 5.1e-29 130.6 74 85.1
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 6.6e-29 130.2 74 82.4
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 6.6e-29 130.2 74 82.4
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 6.6e-29 130.2 74 82.4
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 8.7e-29 129.8 74 82.4
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 8.7e-29 129.8 74 82.4
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 1.1e-28 129.4 74 81.1
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.1e-28 129.4 74 81.1
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 1.1e-28 129.4 74 81.1
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 1.1e-28 129.4 74 85.1
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 1.5e-28 129.0 74 82.4
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 1.5e-28 129.0 74 83.8
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 1.9e-28 128.6 74 83.8
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 1.9e-28 128.6 74 79.7
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 3.3e-28 127.9 74 82.4
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 4.3e-28 127.5 74 83.8
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 4.3e-28 127.5 74 81.1
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 4.3e-28 127.5 69 87.0
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 5.6e-28 127.1 74 82.4
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 7.3e-28 126.7 74 78.4
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 7.3e-28 126.7 74 78.4
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 7.3e-28 126.7 74 78.4
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 7.3e-28 126.7 74 78.4
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 7.3e-28 126.7 74 82.4
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 7.3e-28 126.7 74 82.4
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 7.3e-28 126.7 74 82.4
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 9.6e-28 126.3 74 81.1
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 9.6e-28 126.3 72 84.7
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 1.3e-27 125.9 74 81.1
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 1.3e-27 125.9 74 83.8
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 1.3e-27 125.9 74 78.4
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 1.3e-27 125.9 74 78.4
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 1.6e-27 125.6 74 77.0
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.6e-27 125.6 74 77.0
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 1.6e-27 125.6 74 81.1
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 2.1e-27 125.2 72 80.6
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 2.1e-27 125.2 74 81.1
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 2.8e-27 124.8 72 81.9
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 2.8e-27 124.8 74 81.1
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 3.6e-27 124.4 74 77.0
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 3.6e-27 124.4 74 83.8
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.6e-27 124.4 77 79.2
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 3.6e-27 124.4 72 80.6
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 4.8e-27 124.0 74 79.7
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 6.2e-27 123.6 74 78.4
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 8.1e-27 123.2 74 79.7
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.1e-26 122.9 72 80.6
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.1e-26 122.9 70 81.4
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 1.1e-26 122.9 72 80.6
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 1.1e-26 122.9 64 87.5
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 1.1e-26 122.9 74 77.0
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 1.1e-26 122.9 71 80.3
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.8e-26 122.1 74 81.1
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 1.8e-26 122.1 74 79.7
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 2.4e-26 121.7 74 81.1
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 2.4e-26 121.7 74 79.7
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 2.4e-26 121.7 72 77.8
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 4.0e-26 120.9 74 75.7
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 4.0e-26 120.9 96 65.6
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 4.0e-26 120.9 74 75.7
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 4.0e-26 120.9 72 79.2
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 5.3e-26 120.6 72 79.2
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 6.9e-26 120.2 74 75.7
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 9.0e-26 119.8 66 80.3
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 9.0e-26 119.8 72 77.8
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 1.2e-25 119.4 74 78.4
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.2e-25 119.4 72 79.2
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.2e-25 119.4 72 79.2
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.2e-25 119.4 72 79.2
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.2e-25 119.4 74 78.4
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.2e-25 119.4 72 76.4
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.5e-25 119.0 72 79.2
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 1.5e-25 119.0 74 77.0
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 1.5e-25 119.0 72 76.4
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 1.5e-25 119.0 72 76.4
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 1.5e-25 119.0 74 77.0
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 1.5e-25 119.0 72 77.8
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 1.5e-25 119.0 72 77.8
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 3.4e-25 117.9 74 73.0
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 4.4e-25 117.5 72 75.0
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 4.4e-25 117.5 101 62.4
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 4.4e-25 117.5 72 76.4
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 7.6e-25 116.7 74 75.7
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 7.6e-25 116.7 61 88.5
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 7.6e-25 116.7 74 77.0
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 7.6e-25 116.7 74 77.0
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 9.9e-25 116.3 66 83.3
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.7e-24 115.5 72 76.4
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 2.2e-24 115.2 74 73.0
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 2.2e-24 115.2 74 75.7
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.9e-24 114.8 72 72.2
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 1.1e-23 112.8 74 70.3
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 1.4e-23 112.5 74 74.3
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 1.4e-23 112.5 74 74.3
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 1.4e-23 112.5 74 74.3
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 1.4e-23 112.5 74 74.3
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.4e-23 112.5 91 64.8
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 1.4e-23 112.5 74 74.3
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 3.2e-23 111.3 98 59.2
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 3.2e-23 111.3 74 74.3
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 5.4e-23 110.5 73 68.5
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 7.1e-23 110.2 74 70.3
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 7.1e-23 110.2 70 72.9
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 7.1e-23 110.2 63 77.8
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 2.7e-22 108.2 68 72.1
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 3.5e-22 107.8 74 67.6
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 4.6e-22 107.5 82 64.6
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 6.0e-22 107.1 78 67.9
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 6.0e-22 107.1 102 54.9
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 7.8e-22 106.7 63 76.2
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 1.0e-21 106.3 68 72.1
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 1.0e-21 106.3 61 73.8
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 1.0e-21 106.3 74 70.3
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 1.0e-21 106.3 74 70.3
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 1.3e-21 105.9 63 77.8
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 1.7e-21 105.5 64 75.0
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 5.1e-21 104.0 63 76.2
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 6.6e-21 103.6 63 76.2
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 6.6e-21 103.6 63 76.2
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 6.6e-21 103.6 63 76.2
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 6.6e-21 103.6 63 76.2
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 6.6e-21 103.6 63 76.2
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 8.7e-21 103.2 63 74.6
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 1.1e-20 102.8 62 77.4
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 1.1e-20 102.8 62 77.4
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 1.1e-20 102.8 62 77.4
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 1.1e-20 102.8 62 77.4
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 1.1e-20 102.8 62 77.4
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 1.1e-20 102.8 62 77.4
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 2.5e-20 101.7 70 65.7
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.5e-20 101.7 57 82.5
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 3.3e-20 101.3 76 65.8
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 4.3e-20 100.9 57 78.9
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 4.3e-20 100.9 61 73.8
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 5.6e-20 100.5 67 73.1
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 5.6e-20 100.5 76 65.8
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 1.3e-19 99.4 75 62.7
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 2.1e-19 98.6 57 82.5
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 2.8e-19 98.2 57 77.2
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 4.8e-19 97.4 57 80.7
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 6.2e-19 97.1 64 68.8
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 6.2e-19 97.1 57 77.2
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 6.2e-19 97.1 57 75.4
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 1.4e-18 95.9 89 56.2
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 3.1e-18 94.7 59 69.5
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 1.2e-17 92.8 57 73.7
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 2.0e-17 92.0 57 75.4
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 2.0e-17 92.0 57 73.7
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 2.0e-17 92.0 117 45.3
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 2.6e-17 91.7 58 69.0
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 5.8e-17 90.5 57 73.7
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 1.3e-16 89.4 52 73.1
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 2.2e-16 88.6 66 63.6
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 2.9e-16 88.2 49 75.5
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 4.9e-16 87.4 51 76.5
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.4e-16 87.0 58 65.5
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 6.4e-16 87.0 59 59.3
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 1.9e-15 85.5 64 54.7
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 1.6e-14 82.4 57 66.7
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 4.6e-14 80.9 63 57.1
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 7.9e-14 80.1 51 64.7
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 1.3e-13 79.3 49 69.4
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.8e-13 79.0 40 85.0
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 6.7e-13 77.0 53 62.3
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 8.7e-13 76.6 52 69.2
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 8.7e-13 76.6 49 69.4
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 1.5e-12 75.9 57 61.4
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.9e-12 75.5 58 58.6
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.3e-12 74.3 58 56.9
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 1.3e-11 72.8 38 78.9
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 2.4e-10 68.6 45 68.9
Nn2g14157 Nelumbo nucifera HOM05D003756 ORTHO05D004304 6.9e-10 67.0 34 85.3
RcHm_v2.0_Chr7g0240761 Rosa chinensis HOM05D003756 ORTHO05D004304 1.2e-09 66.2 41 73.2
MCO16G664 Micromonas commoda HOM05D003756 ORTHO05D004304 6.5e-08 60.5 51 52.9
PRCOL_00006894 Prasinoderma coloniale HOM05D003756 ORTHO05D004304 2.1e-06 55.5 53 43.4
Aa31LG10G7740 Aethionema arabicum HOM05D003756 ORTHO05D004304 7.9e-06 53.5 35 71.4


User provided reference genes

Program Settings