Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G153052 Glycine max HOM05D005679 ORTHO05D007228 1.5e-189 666.0 341 100.0
VMungo0720G0655 Vigna mungo HOM05D005679 ORTHO05D007228 4.0e-153 545.0 321 85.4
Phvul.007G229100 Phaseolus vulgaris HOM05D005679 ORTHO05D007228 6.8e-153 544.3 321 86.0
arahy.Tifrunner.gnm1.ann1.J82H2E Arachis hypogaea HOM05D005679 ORTHO05D007228 4.0e-137 491.9 332 73.5
Lj5g0006681 Lotus japonicus HOM05D005679 ORTHO05D007228 2.6e-136 489.2 338 74.6
Glyma.10G071200 Glycine max HOM05D005679 ORTHO05D007228 1.7e-135 486.5 320 80.6
Psat6g080840 Pisum sativum HOM05D005679 ORTHO05D007228 5.4e-134 481.5 342 71.1
Lalb_Chr21g0315771 Lupinus albus HOM05D005679 ORTHO05D007228 2.3e-132 476.1 331 74.9
Medtr1g060300 Medicago truncatula HOM05D005679 ORTHO05D007228 6.6e-132 474.6 313 73.8
arahy.Tifrunner.gnm1.ann1.5KE53F Arachis hypogaea HOM05D005679 ORTHO05D007228 4.3e-131 471.9 312 74.0
TPR.G31118 Trifolium pratense HOM05D005679 ORTHO05D007228 3.7e-127 458.8 329 70.2
Hma1.2p1_0536F.1_g174040 Hydrangea macrophylla HOM05D005679 ORTHO05D007228 9.6e-115 417.5 314 68.5
TAR633G0672 Trochodendron aralioides HOM05D005679 ORTHO05D007228 1.1e-113 414.1 309 64.4
GSVIVG01033827001 Vitis vinifera HOM05D005679 ORTHO05D007228 2.6e-112 409.5 309 64.7
ClCG10G019090 Citrullus lanatus HOM05D005679 ORTHO05D007228 4.4e-112 408.7 312 64.1
MELO3C009462.2 Cucumis melo HOM05D005679 ORTHO05D007228 5.8e-112 408.3 310 64.2
Thecc.05G087100 Theobroma cacao HOM05D005679 ORTHO05D007228 9.9e-112 407.5 310 62.9
CANSAT80G1368 Cannabis sativa HOM05D005679 ORTHO05D007228 1.7e-111 406.8 313 62.3
CiPaw.09G012600 Carya illinoinensis HOM05D005679 ORTHO05D007228 4.9e-111 405.2 306 65.0
CsaV3_3G037160 Cucumis sativus L. HOM05D005679 ORTHO05D007228 4.9e-111 405.2 310 63.2
Rhsim03G0076400 Rhododendron simsii HOM05D005679 ORTHO05D007228 4.9e-111 405.2 309 66.7
Duzib093G1300 Durio zibethinus HOM05D005679 ORTHO05D007228 1.4e-110 403.7 312 63.5
Eucgr.A01508 Eucalyptus grandis HOM05D005679 ORTHO05D007228 4.2e-110 402.1 321 62.0
MD14G1020800 Malus domestica HOM05D005679 ORTHO05D007228 2.7e-109 399.4 307 63.2
COL.COLO4_29768 Corchorus olitorius HOM05D005679 ORTHO05D007228 3.5e-109 399.1 310 61.9
Actinidia05440 Actinidia chinensis HOM05D005679 ORTHO05D007228 4.6e-109 398.7 311 65.6
vmacro07401 Vaccinium macrocarpon HOM05D005679 ORTHO05D007228 7.9e-109 397.9 329 62.0
Gohir.D04G100800 Gossypium hirsutum HOM05D005679 ORTHO05D007228 3.9e-108 395.6 312 60.3
Atru.chr8.1566 Acer truncatum HOM05D005679 ORTHO05D007228 5.1e-108 395.2 303 61.4
Potri.006G083300 Populus trichocarpa HOM05D005679 ORTHO05D007228 5.1e-108 395.2 310 63.5
MD12G1023600 Malus domestica HOM05D005679 ORTHO05D007228 8.7e-108 394.4 307 63.2
Dinv21221 Davidia involucrata HOM05D005679 ORTHO05D007228 1.1e-107 394.0 307 64.8
Gorai.009G404000 Gossypium raimondii HOM05D005679 ORTHO05D007228 4.3e-107 392.1 313 60.4
Migut.J01051 Erythranthe guttata HOM05D005679 ORTHO05D007228 4.8e-106 388.7 317 59.6
Sabra06G0062900 Salix brachista HOM05D005679 ORTHO05D007228 2.4e-105 386.3 308 62.7
Ciclev10012247m.g Citrus clementina HOM05D005679 ORTHO05D007228 3.1e-105 386.0 310 61.3
Gohir.A04G063700 Gossypium hirsutum HOM05D005679 ORTHO05D007228 4.0e-105 385.6 312 58.7
Cc06_g05640 Coffea canephora HOM05D005679 ORTHO05D007228 7.6e-104 381.3 316 59.8
PGR004G0569 Punica granatum HOM05D005679 ORTHO05D007228 1.3e-103 380.6 307 61.2
Manes.09G056451 Manihot esculenta HOM05D005679 ORTHO05D007228 8.4e-103 377.9 322 58.4
Solyc09g009630.3 Solanum lycopersicum HOM05D005679 ORTHO05D007228 1.4e-102 377.1 307 61.2
Sopen09g004390 Solanum pennellii HOM05D005679 ORTHO05D007228 3.2e-102 375.9 307 60.9
Lsat_1_v5_gn_1_48041 Lactuca sativa HOM05D005679 ORTHO05D007228 5.5e-102 375.2 316 59.8
Peaxi162Scf00040g01117 Petunia axillaris HOM05D005679 ORTHO05D007228 9.3e-102 374.4 321 59.2
HanXRQChr10g0313901 Helianthus annuus HOM05D005679 ORTHO05D007228 4.6e-101 372.1 307 57.7
Oeu047193.1 Olea europaea HOM05D005679 ORTHO05D007228 7.9e-101 371.3 306 60.5
RcHm_v2.0_Chr3g0472981 Rosa chinensis HOM05D005679 ORTHO05D007228 7.9e-101 371.3 307 62.2
PGSC0003DMG401002654 Solanum tuberosum HOM05D005679 ORTHO05D007228 1.0e-100 370.9 307 60.9
Sp4g18530 Schrenkiella parvula HOM05D005679 ORTHO05D007228 1.3e-100 370.5 304 60.5
MSTRG.5837 Avicennia marina HOM05D005679 ORTHO05D007228 1.8e-100 370.2 308 58.4
Nn6g34939 Nelumbo nucifera HOM05D005679 ORTHO05D007228 2.3e-100 369.8 321 57.0
Aa31LG5G21440 Aethionema arabicum HOM05D005679 ORTHO05D007228 3.3e-99 365.9 304 59.5
Carub.0004s1806 Capsella rubella HOM05D005679 ORTHO05D007228 1.3e-98 364.0 311 58.8
BcaB01g03852 Brassica carinata HOM05D005679 ORTHO05D007228 3.7e-98 362.5 308 59.1
SGA_v2.0_scaffold13G06736 Striga asiatica HOM05D005679 ORTHO05D007228 1.1e-97 360.9 292 59.2
A03p20010 Brassica napus HOM05D005679 ORTHO05D007228 1.4e-97 360.5 308 59.7
BraA03t11252Z Brassica rapa HOM05D005679 ORTHO05D007228 1.4e-97 360.5 308 59.7
FAN05G0675 Fragaria x ananassa HOM05D005679 ORTHO05D007228 1.8e-97 360.1 307 59.0
HanXRQChr13g0424691 Helianthus annuus HOM05D005679 ORTHO05D007228 1.8e-97 360.1 293 57.7
FAN14G3109 Fragaria x ananassa HOM05D005679 ORTHO05D007228 2.4e-97 359.8 306 59.2
THA.LOC104807091 Tarenaya hassleriana HOM05D005679 ORTHO05D007228 2.4e-97 359.8 303 59.1
Aqoxy4G02804 Aquilegia oxysepala HOM05D005679 ORTHO05D007228 4.0e-97 359.0 304 55.3
FvH4_6g18450 Fragaria vesca HOM05D005679 ORTHO05D007228 9.0e-97 357.8 306 58.8
Thhalv10016950m.g Eutrema salsugineum HOM05D005679 ORTHO05D007228 1.0e-95 354.4 313 58.1
PSO339G3946 Papaver somniferum HOM05D005679 ORTHO05D007228 1.3e-95 354.0 307 57.7
Ca_26654_v3 Cicer arietinum L. HOM05D005679 ORTHO05D007228 1.7e-95 353.6 250 73.2
C03p23450 Brassica napus HOM05D005679 ORTHO05D007228 3.8e-95 352.4 309 59.5
TWI77G0106 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 4.9e-95 352.1 281 63.7
PSO384G2019 Papaver somniferum HOM05D005679 ORTHO05D007228 8.4e-95 351.3 307 57.3
Sc02g0000910 Simmondsia chinensis HOM05D005679 ORTHO05D007228 1.1e-94 350.9 297 58.9
BolC3t14741H Brassica oleracea HOM05D005679 ORTHO05D007228 4.2e-94 349.0 308 58.4
BcaC01g05669 Brassica carinata HOM05D005679 ORTHO05D007228 5.5e-94 348.6 308 58.8
AL4G32420 Arabidopsis lyrata HOM05D005679 ORTHO05D007228 2.1e-93 346.7 304 56.9
HanXRQChr11g0340241 Helianthus annuus HOM05D005679 ORTHO05D007228 2.7e-93 346.3 306 55.9
QL07p039311 Quercus lobata HOM05D005679 ORTHO05D007228 1.8e-92 343.6 263 65.8
AT2G36305 Arabidopsis thaliana HOM05D005679 ORTHO05D007228 2.3e-92 343.2 311 54.7
FAN02G2684 Fragaria x ananassa HOM05D005679 ORTHO05D007228 2.8e-90 336.3 316 56.0
SHI23954 Sapria himalayana HOM05D005679 ORTHO05D007228 1.1e-89 334.3 314 54.8
CSS0002811 Camellia sinensis var. sinensis HOM05D005679 ORTHO05D007228 2.6e-88 329.7 238 68.1
Haze_19592 Corylus avellana HOM05D005679 ORTHO05D007228 7.6e-88 328.2 272 63.6
EL10Ac7g16934 Beta vulgaris HOM05D005679 ORTHO05D007228 5.0e-87 325.5 305 54.8
Nitab4.5_0001725g0030 Nicotiana tabacum HOM05D005679 ORTHO05D007228 4.2e-86 322.4 305 56.4
TWI53G0317 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 1.3e-84 317.4 272 60.3
Ah.08g210640 Amaranthus hybridus HOM05D005679 ORTHO05D007228 7.4e-83 311.6 324 51.5
Nitab4.5_0002400g0100 Nicotiana tabacum HOM05D005679 ORTHO05D007228 5.3e-81 305.4 320 53.1
HPP92_006355 Vanilla planifolia HOM05D005679 ORTHO05D007228 2.6e-80 303.1 308 52.9
FAN05G4213 Fragaria x ananassa HOM05D005679 ORTHO05D007228 6.5e-79 298.5 267 58.1
ECA248G1272 Erigeron canadensis HOM05D005679 ORTHO05D007228 1.2e-77 294.3 259 56.0
Prupe.7G112900 Prunus persica HOM05D005679 ORTHO05D007228 3.6e-77 292.7 221 64.3
Sed0004661 Sechium edule HOM05D005679 ORTHO05D007228 1.7e-74 283.9 244 61.1
HanXRQChr10g0313981 Helianthus annuus HOM05D005679 ORTHO05D007228 2.8e-74 283.1 241 56.4
CAN.G397.28 Capsicum annuum HOM05D005679 ORTHO05D007228 3.7e-74 282.7 222 61.3
ATR0568G150 Amborella trichopoda HOM05D005679 ORTHO05D007228 5.3e-73 278.9 267 56.6
TAR636G2700 Trochodendron aralioides HOM05D005679 ORTHO05D007228 2.9e-71 273.1 293 52.9
unitig_749.g14296 Utricularia gibba HOM05D005679 ORTHO05D007228 3.0e-68 263.1 265 53.6
HanXRQChr10g0314031 Helianthus annuus HOM05D005679 ORTHO05D007228 2.0e-67 260.4 209 57.9
Zm00001eb285910 Zea mays HOM05D005679 ORTHO05D007228 2.2e-63 246.9 308 44.8
Mapoly0066s0044 Marchantia polymorpha HOM05D005679 ORTHO05D007228 3.8e-63 246.1 320 44.1
Os05g0357700 Oryza sativa ssp. japonica HOM05D005679 ORTHO05D007228 5.7e-59 232.3 221 52.5
Pp3c4_17190 Physcomitrium patens HOM05D005679 ORTHO05D007228 2.0e-56 223.8 314 42.0
HanXRQChr10g0314011 Helianthus annuus HOM05D005679 ORTHO05D007228 3.5e-56 223.0 179 59.8
SMO203G0038 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 4.5e-56 222.6 320 39.4
Lj9A526G37 Lonicera japonica HOM05D005679 ORTHO05D007228 7.7e-56 221.9 302 44.4
AUR62028550 Chenopodium quinoa HOM05D005679 ORTHO05D007228 1.1e-54 218.0 175 57.1
SMO327G0022 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 1.7e-50 204.1 299 39.5
CARHR130580 Cardamine hirsuta HOM05D005679 ORTHO05D007228 1.6e-48 197.6 190 55.3
Sed0012745 Sechium edule HOM05D005679 ORTHO05D007228 5.9e-48 195.7 211 48.8
SEGI_36814 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 6.5e-47 192.2 229 46.3
AUR62033502 Chenopodium quinoa HOM05D005679 ORTHO05D007228 3.0e-44 183.3 186 52.2
AagrBONN_evm.TU.Sc2ySwM_228.1072 Anthoceros agrestis HOM05D005679 ORTHO05D007228 3.7e-42 176.4 183 48.1
Lj2A135T55 Lonicera japonica HOM05D005679 ORTHO05D007228 2.8e-37 160.2 162 55.6
HanXRQChr10g0313891 Helianthus annuus HOM05D005679 ORTHO05D007228 4.0e-36 156.4 153 54.9
Dinv31674 Davidia involucrata HOM05D005679 ORTHO05D007228 1.7e-34 151.0 257 42.4
CBR_g961 Chara braunii HOM05D005679 ORTHO05D007228 2.2e-34 150.6 336 31.0
CDE02G3258 Ceratophyllum demersum HOM05D005679 ORTHO05D007228 2.9e-34 150.2 105 65.7
SalBow3G2040 Salvia bowleyana HOM05D005679 ORTHO05D007228 1.5e-27 127.9 152 47.4
Lsat_1_v5_gn_1_48021 Lactuca sativa HOM05D005679 ORTHO05D007228 2.0e-27 127.5 90 62.2
Lj2A135G55 Lonicera japonica HOM05D005679 ORTHO05D007228 9.8e-27 125.2 73 68.5
Cre01.g042150 Chlamydomonas reinhardtii HOM05D005679 ORTHO05D007228 4.9e-26 122.9 150 43.3
AUR62033501 Chenopodium quinoa HOM05D005679 ORTHO05D007228 4.3e-22 109.8 189 39.7
AUR62028549 Chenopodium quinoa HOM05D005679 ORTHO05D007228 5.6e-22 109.4 176 40.3
Gorai.006G155900 Gossypium raimondii HOM05D005679 ORTHO05D007228 1.2e-21 108.2 74 64.9
MCO10G317 Micromonas commoda HOM05D005679 ORTHO05D007228 2.1e-21 107.5 145 40.7
Gohir.D09G135950 Gossypium hirsutum HOM05D005679 ORTHO05D007228 3.6e-21 106.7 74 63.5
DCAR_009157 Daucus carota HOM05D005679 ORTHO05D007228 1.2e-19 101.7 117 43.6
Actinidia14313 Actinidia chinensis HOM05D005679 ORTHO05D007228 1.4e-17 94.7 194 35.6
SEGI_00479 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 7.3e-14 82.4 70 48.6
HanXRQChr10g0313971 Helianthus annuus HOM05D005679 ORTHO05D007228 1.4e-12 78.2 106 45.3
PRCOL_00001551 Prasinoderma coloniale HOM05D005679 ORTHO05D007228 2.6e-11 73.9 136 34.6
arahy.Tifrunner.gnm1.ann1.7P1BGF Arachis hypogaea HOM05D005679 ORTHO05D003748 2.4e-09 67.4 37 83.8


User provided reference genes

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