Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G152304 Glycine max HOM05D006452 ORTHO05D008068 0.0e+00 1196.4 604 100.0
Glyma.10G069100 Glycine max HOM05D006452 ORTHO05D008068 0.0e+00 1103.6 604 92.9
VMungo0540G0818 Vigna mungo HOM05D006452 ORTHO05D008068 8.3e-295 1016.5 606 85.8
Phvul.006G180500 Phaseolus vulgaris HOM05D006452 ORTHO05D008068 7.0e-294 1013.4 606 85.8
Ca_00397_v3 Cicer arietinum L. HOM05D006452 ORTHO05D008068 2.2e-263 912.1 610 76.7
Lj6g0021964 Lotus japonicus HOM05D006452 ORTHO05D008068 4.1e-262 907.9 610 76.9
Medtr2g014890 Medicago truncatula HOM05D006452 ORTHO05D008068 3.0e-260 901.7 608 76.0
Lalb_Chr18g0059351 Lupinus albus HOM05D006452 ORTHO05D008068 2.8e-242 842.0 601 71.0
arahy.Tifrunner.gnm1.ann1.FLUH97 Arachis hypogaea HOM05D006452 ORTHO05D008068 3.4e-232 808.5 614 67.9
arahy.Tifrunner.gnm1.ann1.228Z0R Arachis hypogaea HOM05D006452 ORTHO05D008068 3.0e-228 795.4 613 67.0
CiPaw.09G065500 Carya illinoinensis HOM05D006452 ORTHO05D008068 4.8e-202 708.4 610 60.0
Cfa000544 Carpinus fangiana HOM05D006452 ORTHO05D008068 5.0e-199 698.4 589 60.3
Ciclev10014636m.g Citrus clementina HOM05D006452 ORTHO05D008068 6.5e-199 698.0 606 59.4
QL05p043485 Quercus lobata HOM05D006452 ORTHO05D008068 1.5e-195 686.8 608 59.5
TPR.G11703 Trifolium pratense HOM05D006452 ORTHO05D008068 1.5e-195 686.8 479 72.9
RcHm_v2.0_Chr5g0009531 Rosa chinensis HOM05D006452 ORTHO05D008068 2.4e-193 679.5 607 59.0
FvH4_3g08370 Fragaria vesca HOM05D006452 ORTHO05D008068 5.5e-190 668.3 610 58.4
TAR629G0815 Trochodendron aralioides HOM05D006452 ORTHO05D008068 2.7e-189 666.0 607 55.8
MD05G1308100 Malus domestica HOM05D006452 ORTHO05D008068 3.6e-189 665.6 609 57.3
Gorai.010G157000 Gossypium raimondii HOM05D006452 ORTHO05D008068 6.1e-189 664.8 597 57.1
Manes.17G051000 Manihot esculenta HOM05D006452 ORTHO05D008068 1.0e-188 664.1 600 57.0
GSVIVG01021140001 Vitis vinifera HOM05D006452 ORTHO05D008068 1.8e-188 663.3 611 56.1
Gohir.D06G135100 Gossypium hirsutum HOM05D006452 ORTHO05D008068 1.7e-186 656.8 598 56.7
Sabra04G0032100 Salix brachista HOM05D006452 ORTHO05D008068 2.8e-186 656.0 591 56.0
Gohir.A06G134400 Gossypium hirsutum HOM05D006452 ORTHO05D008068 6.3e-186 654.8 597 56.4
Thecc.06G178700 Theobroma cacao HOM05D006452 ORTHO05D008068 6.3e-186 654.8 615 54.8
TWI38G0383 Tripterygium wilfordii HOM05D006452 ORTHO05D008068 1.7e-183 646.7 593 56.5
CANSAT35G2027 Cannabis sativa HOM05D006452 ORTHO05D008068 2.2e-183 646.4 604 56.3
CSS0041533 Camellia sinensis var. sinensis HOM05D006452 ORTHO05D008068 6.5e-183 644.8 584 56.5
Prupe.4G054700 Prunus persica HOM05D006452 ORTHO05D008068 3.2e-182 642.5 599 57.1
Duzib235G0445 Durio zibethinus HOM05D006452 ORTHO05D008068 7.2e-182 641.3 591 55.5
Hma1.2p1_1465F.1_g285350 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 1.2e-179 634.0 554 58.3
Actinidia39488 Actinidia chinensis HOM05D006452 ORTHO05D008068 2.0e-179 633.3 585 55.6
Nn1g06365 Nelumbo nucifera HOM05D006452 ORTHO05D008068 3.8e-175 619.0 602 52.0
AT1G28530 Arabidopsis thaliana HOM05D006452 ORTHO05D008068 1.5e-174 617.1 609 54.7
COL.COLO4_31396 Corchorus olitorius HOM05D006452 ORTHO05D008068 3.3e-174 615.9 576 55.6
FAN25G3335 Fragaria x ananassa HOM05D006452 ORTHO05D008068 1.6e-173 613.6 605 54.5
Carub.0001s2699 Capsella rubella HOM05D006452 ORTHO05D008068 2.1e-173 613.2 610 53.8
THA.LOC104812622 Tarenaya hassleriana HOM05D006452 ORTHO05D008068 3.6e-173 612.5 599 53.3
BcaC01g00067 Brassica carinata HOM05D006452 ORTHO05D008068 1.2e-171 607.4 616 52.9
Aqoxy4G00567 Aquilegia oxysepala HOM05D006452 ORTHO05D008068 1.3e-170 604.0 603 53.2
MELO3C007247.2 Cucumis melo HOM05D006452 ORTHO05D008068 1.3e-170 604.0 608 53.1
BcaB03g12098 Brassica carinata HOM05D006452 ORTHO05D008068 1.7e-170 603.6 607 52.7
Sp1g24780 Schrenkiella parvula HOM05D006452 ORTHO05D008068 1.7e-170 603.6 608 53.1
CARHR028010 Cardamine hirsuta HOM05D006452 ORTHO05D008068 3.7e-170 602.4 610 53.0
Thhalv10007091m.g Eutrema salsugineum HOM05D006452 ORTHO05D008068 8.3e-170 601.3 611 53.2
C03p75340 Brassica napus HOM05D006452 ORTHO05D008068 2.4e-169 599.7 616 52.9
ClCG01G023380 Citrullus lanatus HOM05D006452 ORTHO05D008068 2.4e-169 599.7 625 51.8
AL1G42150 Arabidopsis lyrata HOM05D006452 ORTHO05D008068 3.1e-169 599.4 610 53.4
BolC3t19793H Brassica oleracea HOM05D006452 ORTHO05D008068 3.1e-169 599.4 611 52.5
FAN11G3013 Fragaria x ananassa HOM05D006452 ORTHO05D008068 5.4e-169 598.6 605 54.5
A08p25460 Brassica napus HOM05D006452 ORTHO05D008068 1.2e-168 597.4 615 52.2
BraA08t34497Z Brassica rapa HOM05D006452 ORTHO05D008068 4.5e-168 595.5 621 52.2
Oeu001094.1 Olea europaea HOM05D006452 ORTHO05D008068 5.9e-168 595.1 581 52.7
FAN21G3590 Fragaria x ananassa HOM05D006452 ORTHO05D008068 7.8e-168 594.7 613 54.2
Lj1A1199G43 Lonicera japonica HOM05D006452 ORTHO05D008068 7.8e-168 594.7 590 54.4
Psat1g201640 Pisum sativum HOM05D006452 ORTHO05D008068 1.9e-166 590.1 400 75.2
Haze_06337 Corylus avellana HOM05D006452 ORTHO05D008068 4.7e-165 585.5 627 51.4
Nitab4.5_0001375g0100 Nicotiana tabacum HOM05D006452 ORTHO05D008068 4.0e-164 582.4 624 51.9
Rhsim02G0137400 Rhododendron simsii HOM05D006452 ORTHO05D008068 1.2e-163 580.9 646 48.8
Atru.chr10.1767 Acer truncatum HOM05D006452 ORTHO05D008068 4.4e-163 578.9 541 55.1
Nitab4.5_0000516g0020 Nicotiana tabacum HOM05D006452 ORTHO05D008068 7.5e-163 578.2 590 53.4
PGSC0003DMG400012819 Solanum tuberosum HOM05D006452 ORTHO05D008068 4.1e-161 572.4 592 51.7
Sopen03g002290 Solanum pennellii HOM05D006452 ORTHO05D008068 6.6e-159 565.1 593 51.3
PSO832G2664 Papaver somniferum HOM05D006452 ORTHO05D008068 2.6e-155 553.1 689 44.8
Aa31LG6G11040 Aethionema arabicum HOM05D006452 ORTHO05D008068 3.4e-155 552.7 689 46.0
Migut.M01092 Erythranthe guttata HOM05D006452 ORTHO05D008068 1.7e-154 550.4 569 51.0
AUR62014896 Chenopodium quinoa HOM05D006452 ORTHO05D008068 5.4e-153 545.4 571 50.8
ECA234G2428 Erigeron canadensis HOM05D006452 ORTHO05D008068 1.2e-152 544.3 603 48.9
AUR62031101 Chenopodium quinoa HOM05D006452 ORTHO05D008068 2.7e-152 543.1 571 50.1
PSO210G4080 Papaver somniferum HOM05D006452 ORTHO05D008068 3.5e-152 542.7 689 43.8
EL10Ac8g20457 Beta vulgaris HOM05D006452 ORTHO05D008068 8.6e-151 538.1 642 47.0
HanXRQChr16g0518591 Helianthus annuus HOM05D006452 ORTHO05D008068 1.5e-150 537.3 608 47.4
Cc00_g07720 Coffea canephora HOM05D006452 ORTHO05D008068 3.1e-148 529.6 588 49.7
Lsat_1_v5_gn_4_51620 Lactuca sativa HOM05D006452 ORTHO05D008068 5.2e-148 528.9 612 46.7
Dinv40619 Davidia involucrata HOM05D006452 ORTHO05D008068 2.6e-147 526.6 449 58.8
SalBow8G3895 Salvia bowleyana HOM05D006452 ORTHO05D008068 1.9e-142 510.4 626 45.7
SGA_v2.0_scaffold16G07655 Striga asiatica HOM05D006452 ORTHO05D008068 4.4e-139 499.2 568 46.7
Cpa.g.sc7.8 Carica papaya HOM05D006452 ORTHO05D008068 3.3e-134 483.0 422 58.8
Potri.004G051000 Populus trichocarpa HOM05D006452 ORTHO05D008068 1.2e-131 474.6 421 55.8
Hma1.2p1_1465F.1_g285340 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 3.4e-131 473.0 429 56.2
Solyc03g006280.4 Solanum lycopersicum HOM05D006452 ORTHO05D008068 7.6e-131 471.9 592 45.6
Sed0012413 Sechium edule HOM05D006452 ORTHO05D008068 1.7e-130 470.7 457 53.6
ATR0602G160 Amborella trichopoda HOM05D006452 ORTHO05D008068 3.2e-129 466.5 611 42.9
FAN16G3312 Fragaria x ananassa HOM05D006452 ORTHO05D008068 1.6e-128 464.2 421 57.2
unitig_8.g4630 Utricularia gibba HOM05D006452 ORTHO05D008068 1.8e-124 450.7 597 42.5
MBI07_g32549_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 6.9e-124 448.7 566 43.3
Sc17g0005860 Simmondsia chinensis HOM05D006452 ORTHO05D008068 2.0e-123 447.2 619 43.8
PGR004G2109 Punica granatum HOM05D006452 ORTHO05D008068 4.6e-120 436.0 412 55.3
DCAR_006579 Daucus carota HOM05D006452 ORTHO05D008068 6.7e-119 432.2 580 42.6
HPP92_000497 Vanilla planifolia HOM05D006452 ORTHO05D008068 8.1e-117 425.2 634 40.9
CAN.G189.65 Capsicum annuum HOM05D006452 ORTHO05D008068 1.3e-114 417.9 443 51.5
CDE10G0189 Ceratophyllum demersum HOM05D006452 ORTHO05D008068 1.9e-113 414.1 491 46.0
vmacro15945 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 4.6e-112 409.5 364 55.2
Eucgr.D00580 Eucalyptus grandis HOM05D006452 ORTHO05D008068 6.0e-112 409.1 434 51.6
Hund23835 Selenicereus undatus HOM05D006452 ORTHO05D008068 3.4e-107 393.3 482 47.3
Peaxi162Scf01018g00215 Petunia axillaris HOM05D006452 ORTHO05D008068 7.1e-105 385.6 583 41.5
CsaV3_6G050510 Cucumis sativus L. HOM05D006452 ORTHO05D008068 3.0e-103 380.2 416 48.8
Os02g0109900 Oryza sativa ssp. japonica HOM05D006452 ORTHO05D008068 1.5e-99 367.9 578 37.0
Zm00001eb229620 Zea mays HOM05D006452 ORTHO05D008068 1.1e-89 335.1 579 37.1
MBI07_g06446_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 6.7e-87 325.9 613 33.6
TPR.G10795 Trifolium pratense HOM05D006452 ORTHO05D008068 9.4e-81 305.4 208 75.5
Psat1g201600 Pisum sativum HOM05D006452 ORTHO05D008068 1.3e-74 285.0 194 74.2
CAN.G1286.36 Capsicum annuum HOM05D006452 ORTHO05D008068 2.1e-72 277.7 295 49.5
Mapoly0052s0014 Marchantia polymorpha HOM05D006452 ORTHO05D008068 1.8e-63 248.1 575 29.6
CAN.G801.36 Capsicum annuum HOM05D006452 ORTHO05D008068 2.2e-53 214.5 233 48.5
AagrBONN_evm.TU.Sc2ySwM_228.5590 Anthoceros agrestis HOM05D006452 ORTHO05D008068 8.9e-47 192.6 633 27.6
vmacro15946 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 1.2e-40 172.2 272 40.1
Lsat_1_v5_gn_9_9480 Lactuca sativa HOM05D006452 ORTHO05D008068 4.7e-32 143.7 287 35.2
SEGI_13408 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 1.3e-26 125.6 208 33.7
unitig_8.g4641 Utricularia gibba HOM05D006452 ORTHO05D008068 1.3e-26 125.6 154 44.2
CDE10G0511 Ceratophyllum demersum HOM05D002520 ORTHO05D003144 8.4e-21 106.3 118 52.5
SEGI_16257 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 1.4e-20 105.5 308 28.2
Pp3c17_22050 Physcomitrium patens HOM05D006452 ORTHO05D008068 2.7e-19 101.3 322 27.3
BcaC01g06820 Brassica carinata HOM05D006452 ORTHO05D008068 2.4e-15 88.2 93 52.7
Peaxi162Scf01018g00213 Petunia axillaris HOM05D006452 ORTHO05D008068 4.4e-14 84.0 69 60.9
GSVIVG01026713001 Vitis vinifera HOM05D006452 ORTHO05D008068 5.8e-14 83.6 65 64.6
CAN.G638.7 Capsicum annuum HOM05D006452 ORTHO05D008068 2.9e-13 81.3 173 37.0
MBI15_g20021_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 3.8e-13 80.9 77 55.8
FvH4_3g08350 Fragaria vesca HOM05D003433 ORTHO05D003921 9.6e-09 66.2 45 66.7
MBI05_g44052_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 9.9e-06 56.2 101 35.6


User provided reference genes

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