Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 0.0e+00 1127.5 573 100.0
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 4.3e-309 1063.9 575 95.0
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 2.1e-284 981.9 573 88.3
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 5.7e-269 930.6 508 92.5
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 2.6e-245 852.0 574 76.8
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 1.8e-243 845.9 566 76.9
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 5.3e-243 844.3 571 75.8
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 2.6e-242 842.0 571 76.7
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 3.5e-242 841.6 561 77.0
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 2.1e-239 832.4 576 75.3
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 8.0e-231 803.9 538 77.3
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 8.0e-231 803.9 538 77.3
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 1.0e-230 803.5 573 72.4
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 1.8e-230 802.7 566 73.1
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 4.0e-230 801.6 573 71.4
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 5.2e-230 801.2 574 72.6
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 9.8e-229 797.0 570 72.3
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 1.7e-228 796.2 595 69.7
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 2.2e-228 795.8 491 80.0
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 2.2e-228 795.8 575 72.2
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 6.3e-228 794.3 504 77.8
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 8.3e-228 793.9 509 77.4
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 1.4e-227 793.1 517 77.2
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 4.1e-227 791.6 571 70.4
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 5.4e-227 791.2 578 70.6
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 7.0e-227 790.8 577 71.6
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 7.0e-227 790.8 572 72.7
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 7.0e-227 790.8 564 72.7
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 1.2e-226 790.0 573 72.1
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 1.2e-226 790.0 505 78.4
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.2e-226 790.0 580 70.0
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 1.2e-226 790.0 505 78.0
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 2.0e-226 789.3 580 69.8
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 3.5e-226 788.5 577 70.5
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 1.7e-225 786.2 565 71.3
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 1.7e-225 786.2 501 77.4
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 2.9e-225 785.4 577 70.0
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 1.1e-224 783.5 570 71.2
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 1.5e-224 783.1 584 70.0
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 9.5e-224 780.4 565 72.6
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 1.2e-223 780.0 548 71.7
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 1.2e-223 780.0 501 77.2
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 3.6e-223 778.5 581 70.6
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 6.1e-223 777.7 573 70.0
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 1.8e-222 776.2 495 76.2
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 2.3e-222 775.8 571 70.2
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 1.5e-221 773.1 556 71.9
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 4.4e-221 771.5 504 76.6
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 1.4e-219 766.5 575 68.7
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 7.0e-219 764.2 565 71.0
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 9.2e-219 763.8 487 76.8
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 7.8e-218 760.8 492 77.0
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 1.7e-217 759.6 508 73.8
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 2.3e-217 759.2 578 67.8
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 1.5e-216 756.5 488 77.5
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 9.5e-216 753.8 484 75.4
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 1.6e-215 753.1 489 76.5
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 4.7e-215 751.5 489 76.3
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 8.0e-215 750.7 489 76.5
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 2.3e-214 749.2 513 72.7
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 3.0e-214 748.8 489 75.1
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 9.8e-213 743.8 489 74.6
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 2.2e-212 742.7 583 66.4
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 8.3e-212 740.7 489 74.4
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 1.1e-211 740.3 489 74.6
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 1.1e-211 740.3 489 74.4
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 1.1e-211 740.3 489 74.4
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 1.1e-211 740.3 598 63.4
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 1.4e-211 740.0 580 65.7
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 3.2e-211 738.8 489 74.4
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 7.0e-211 737.6 478 75.5
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 1.3e-209 733.4 490 72.4
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 2.3e-209 732.6 583 64.7
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 3.0e-209 732.3 490 72.4
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 1.1e-208 730.3 589 65.2
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 9.5e-208 727.2 503 71.8
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 1.2e-207 726.9 503 71.8
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 2.1e-207 726.1 542 68.5
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 4.7e-207 724.9 481 73.6
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 1.1e-206 723.8 445 80.0
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 2.3e-206 722.6 514 70.0
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 5.2e-206 721.5 501 70.7
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 6.8e-206 721.1 475 73.7
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 2.0e-205 719.5 503 72.2
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 2.6e-205 719.2 527 69.6
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 4.4e-205 718.4 554 66.1
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 5.8e-205 718.0 554 66.1
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 2.2e-204 716.1 514 73.3
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 8.3e-204 714.1 555 64.9
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 7.0e-203 711.1 479 72.9
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 1.0e-201 707.2 500 70.6
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.0e-201 707.2 554 65.5
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.4e-198 696.8 442 77.6
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.5e-197 693.3 490 71.8
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 2.0e-197 693.0 528 67.2
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 8.3e-196 687.6 492 69.7
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 7.8e-194 681.0 409 81.4
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 1.7e-193 679.9 508 68.5
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 1.2e-191 673.7 505 66.9
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 1.9e-184 649.8 551 59.5
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 3.6e-183 645.6 489 64.8
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.5e-181 640.2 489 64.2
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 1.5e-181 640.2 574 60.8
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 3.4e-181 639.0 489 64.0
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 9.9e-181 637.5 577 59.1
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 1.7e-180 636.7 479 68.9
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 5.1e-177 625.2 472 65.7
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 8.7e-177 624.4 447 71.4
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 2.5e-176 622.9 464 66.4
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 9.6e-176 620.9 461 65.3
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 6.7e-169 598.2 491 61.3
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 1.3e-164 583.9 478 63.8
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 1.4e-158 563.9 474 55.5
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 2.4e-158 563.1 473 56.9
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 1.0e-153 547.7 478 55.9
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 6.7e-153 545.0 472 55.5
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 1.4e-142 510.8 447 60.4
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 1.2e-141 507.7 553 48.1
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 8.2e-135 485.0 404 63.6
Lj2P123T37 Lonicera japonica HOM05D005722 ORTHO05D007934 7.0e-134 481.9 319 75.9
Sc20g0005800 Simmondsia chinensis HOM05D005722 ORTHO05D007934 1.8e-129 467.2 328 73.2
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 4.8e-127 459.1 518 47.1
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 3.8e-124 449.5 504 45.8
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 2.4e-70 270.8 214 62.6
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 4.0e-65 253.4 477 32.1
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 9.3e-54 215.7 140 73.6
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 9.0e-41 172.6 426 27.0
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 2.0e-40 171.4 114 72.8
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 8.8e-28 129.4 72 79.2
Lsat_1_v5_gn_4_152401 Lactuca sativa HOM05D005722 ORTHO05D007934 7.7e-24 116.3 80 76.2
MCO11G808 Micromonas commoda HOM05D005722 ORTHO05D268580 2.2e-15 88.2 480 24.0
FAN14G5603 Fragaria x ananassa HOM05D005722 ORTHO05D029153 3.8e-15 87.4 58 72.4
MCO10G252 Micromonas commoda HOM05D005722 ORTHO05D270642 6.7e-12 76.6 445 24.9
Cfa016469 Carpinus fangiana HOM05D005722 ORTHO05D125356 2.5e-06 58.2 28 92.9


User provided reference genes

Program Settings