Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G146751 Glycine max HOM05D002585 ORTHO05D002917 1.7e-82 309.3 161 100.0
Glyma.10G060100 Glycine max HOM05D002585 ORTHO05D002917 3.8e-37 158.7 83 94.0
Phvul.007G152300 Phaseolus vulgaris HOM05D002585 ORTHO05D002917 1.5e-33 146.7 83 86.7
VMungo0720G1363 Vigna mungo HOM05D002585 ORTHO05D002917 7.4e-33 144.4 83 85.5
CANSAT80G1527 Cannabis sativa HOM05D002585 ORTHO05D002917 7.6e-30 134.4 83 77.1
CANSAT80G2890 Cannabis sativa HOM05D002585 ORTHO05D002917 7.6e-30 134.4 83 77.1
Lalb_Chr21g0315141 Lupinus albus HOM05D002585 ORTHO05D002917 1.7e-29 133.3 83 75.9
Zm00001eb046790 Zea mays HOM05D002585 ORTHO05D002917 1.7e-29 133.3 83 77.1
CSS0049154 Camellia sinensis var. sinensis HOM05D002585 ORTHO05D002917 2.2e-29 132.9 83 75.9
DCAR_015012 Daucus carota HOM05D002585 ORTHO05D002917 3.8e-29 132.1 83 77.1
TWI53G0795 Tripterygium wilfordii HOM05D002585 ORTHO05D002917 3.8e-29 132.1 83 77.1
QL07p042117 Quercus lobata HOM05D002585 ORTHO05D002917 6.5e-29 131.3 83 75.9
VMungo0720G0437 Vigna mungo HOM05D002585 ORTHO05D002917 6.5e-29 131.3 83 78.3
Atru.chr8.1743 Acer truncatum HOM05D002585 ORTHO05D002917 1.1e-28 130.6 83 74.7
Psat0s3029g0040 Pisum sativum HOM05D002585 ORTHO05D002917 1.1e-28 130.6 83 77.1
Prupe.7G124800 Prunus persica HOM05D002585 ORTHO05D002917 1.1e-28 130.6 83 74.7
GSVIVG01033692001 Vitis vinifera HOM05D002585 ORTHO05D002917 1.1e-28 130.6 83 77.1
A09p46170 Brassica napus HOM05D002585 ORTHO05D002917 1.4e-28 130.2 83 74.7
Cpa.g.sc5.155 Carica papaya HOM05D002585 ORTHO05D002917 1.4e-28 130.2 83 73.5
TPR.G21005 Trifolium pratense HOM05D002585 ORTHO05D002917 1.4e-28 130.2 83 77.1
MELO3C024485.2 Cucumis melo HOM05D002585 ORTHO05D002917 1.9e-28 129.8 83 75.9
CsaV3_6G040120 Cucumis sativus L. HOM05D002585 ORTHO05D002917 1.9e-28 129.8 83 75.9
Medtr1g062650 Medicago truncatula HOM05D002585 ORTHO05D002917 1.9e-28 129.8 83 75.9
SalBow5G4367 Salvia bowleyana HOM05D002585 ORTHO05D002917 1.9e-28 129.8 83 75.9
Migut.L01723 Erythranthe guttata HOM05D002585 ORTHO05D002917 2.5e-28 129.4 83 73.5
Lalb_Chr21g0315161 Lupinus albus HOM05D002585 ORTHO05D002917 2.5e-28 129.4 83 75.9
MBI17_g25733_MAGBIO Magnolia biondii HOM05D002585 ORTHO05D002917 2.5e-28 129.4 83 74.7
Medtr1g062620 Medicago truncatula HOM05D002585 ORTHO05D002917 2.5e-28 129.4 83 77.1
Phvul.007G152500 Phaseolus vulgaris HOM05D002585 ORTHO05D002917 2.5e-28 129.4 83 75.9
Ca_11569_v3 Cicer arietinum L. HOM05D002585 ORTHO05D002917 3.2e-28 129.0 83 77.1
Haze_19443 Corylus avellana HOM05D002585 ORTHO05D002917 3.2e-28 129.0 80 76.2
Glyma.10G060200 Glycine max HOM05D002585 ORTHO05D002917 3.2e-28 129.0 83 75.9
SalBow5G3646 Salvia bowleyana HOM05D002585 ORTHO05D002917 3.2e-28 129.0 83 74.7
Aa31LG10G8350 Aethionema arabicum HOM05D002585 ORTHO05D002917 4.2e-28 128.6 83 73.5
MD13G1277900 Malus domestica HOM05D002585 ORTHO05D002917 4.2e-28 128.6 83 73.5
Sp5g09150 Schrenkiella parvula HOM05D002585 ORTHO05D002917 4.2e-28 128.6 83 74.7
BraA09t40081Z Brassica rapa HOM05D002585 ORTHO05D002917 5.5e-28 128.3 83 73.5
Lj5g0002795 Lotus japonicus HOM05D002585 ORTHO05D002917 5.5e-28 128.3 83 74.7
Medtr1g062710 Medicago truncatula HOM05D002585 ORTHO05D002917 5.5e-28 128.3 83 74.7
Psat6g074480 Pisum sativum HOM05D002585 ORTHO05D002917 5.5e-28 128.3 83 74.7
Rhsim03G0088700 Rhododendron simsii HOM05D002585 ORTHO05D002917 5.5e-28 128.3 83 74.7
Sed0026659 Sechium edule HOM05D002585 ORTHO05D002917 5.5e-28 128.3 83 74.7
SGA_v2.0_scaffold224G42925 Striga asiatica HOM05D002585 ORTHO05D002917 5.5e-28 128.3 83 73.5
Thecc.05G072300 Theobroma cacao HOM05D002585 ORTHO05D002917 5.5e-28 128.3 83 75.9
ATR0043G008 Amborella trichopoda HOM05D002585 ORTHO05D002917 7.2e-28 127.9 80 76.2
Manes.08G013600 Manihot esculenta HOM05D002585 ORTHO05D002917 7.2e-28 127.9 83 72.3
Manes.08G013700 Manihot esculenta HOM05D002585 ORTHO05D002917 7.2e-28 127.9 83 73.5
RcHm_v2.0_Chr3g0470971 Rosa chinensis HOM05D002585 ORTHO05D002917 7.2e-28 127.9 83 75.9
TAR369G0251 Trochodendron aralioides HOM05D002585 ORTHO05D002917 7.2e-28 127.9 83 74.7
Cfa021472 Carpinus fangiana HOM05D002585 ORTHO05D002917 9.3e-28 127.5 83 72.3
SHI27837 Sapria himalayana HOM05D002585 ORTHO05D002917 9.3e-28 127.5 85 71.8
TPR.G21013 Trifolium pratense HOM05D002585 ORTHO05D002917 9.3e-28 127.5 83 74.7
FAN05G4117 Fragaria x ananassa HOM05D002585 ORTHO05D002917 1.2e-27 127.1 83 75.9
FAN14G4746 Fragaria x ananassa HOM05D002585 ORTHO05D002917 1.2e-27 127.1 83 75.9
vmacro07324 Vaccinium macrocarpon HOM05D002585 ORTHO05D002917 1.2e-27 127.1 83 74.7
Ciclev10011061m.g Citrus clementina HOM05D002585 ORTHO05D002917 1.6e-27 126.7 83 73.5
Os10g0456500 Oryza sativa ssp. japonica HOM05D002585 ORTHO05D002917 1.6e-27 126.7 181 44.8
PSO063G7003 Papaver somniferum HOM05D002585 ORTHO05D002917 1.6e-27 126.7 83 71.1
CARHR163130 Cardamine hirsuta HOM05D002585 ORTHO05D002917 2.1e-27 126.3 83 71.1
CiPaw.09G003100 Carya illinoinensis HOM05D002585 ORTHO05D002917 2.1e-27 126.3 83 71.1
Dinv37345 Davidia involucrata HOM05D002585 ORTHO05D002917 2.1e-27 126.3 83 71.1
Thhalv10010120m.g Eutrema salsugineum HOM05D002585 ORTHO05D002917 2.1e-27 126.3 83 72.3
BolC6t37286H Brassica oleracea HOM05D002585 ORTHO05D002917 2.7e-27 125.9 83 71.1
COL.COLO4_26904 Corchorus olitorius HOM05D002585 ORTHO05D002917 2.7e-27 125.9 83 74.7
FvH4_6g16930 Fragaria vesca HOM05D002585 ORTHO05D002917 2.7e-27 125.9 83 74.7
Gohir.D04G108400 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.7e-27 125.9 83 73.5
Gorai.009G412500 Gossypium raimondii HOM05D002585 ORTHO05D002917 2.7e-27 125.9 83 73.5
Peaxi162Scf00110g00619 Petunia axillaris HOM05D002585 ORTHO05D002917 2.7e-27 125.9 83 74.7
BraA07t29828Z Brassica rapa HOM05D002585 ORTHO05D002917 3.6e-27 125.6 83 71.1
CAN.G541.44 Capsicum annuum HOM05D002585 ORTHO05D002917 3.6e-27 125.6 83 73.5
Ca_05180_v3 Cicer arietinum L. HOM05D002585 ORTHO05D002917 3.6e-27 125.6 83 72.3
ClCG04G009500 Citrullus lanatus HOM05D002585 ORTHO05D002917 3.6e-27 125.6 85 71.8
Duzib093G2252 Durio zibethinus HOM05D002585 ORTHO05D002917 3.6e-27 125.6 83 74.7
Eucgr.A01617 Eucalyptus grandis HOM05D002585 ORTHO05D002917 3.6e-27 125.6 83 72.3
PGR004G2132 Punica granatum HOM05D002585 ORTHO05D002917 3.6e-27 125.6 83 72.3
MSTRG.26675 Avicennia marina HOM05D002585 ORTHO05D002917 4.6e-27 125.2 83 72.3
Lalb_Chr02g0155471 Lupinus albus HOM05D002585 ORTHO05D002917 4.6e-27 125.2 78 74.4
Oeu041475.1 Olea europaea HOM05D002585 ORTHO05D002917 4.6e-27 125.2 83 72.3
PSO339G5475 Papaver somniferum HOM05D002585 ORTHO05D002917 4.6e-27 125.2 83 69.9
Potri.006G121000 Populus trichocarpa HOM05D002585 ORTHO05D002917 4.6e-27 125.2 83 72.3
Actinidia28922 Actinidia chinensis HOM05D002585 ORTHO05D002917 6.1e-27 124.8 83 73.5
AL5G34060 Arabidopsis lyrata HOM05D002585 ORTHO05D002917 6.1e-27 124.8 83 71.1
RcHm_v2.0_Chr5g0018301 Rosa chinensis HOM05D002585 ORTHO05D002917 6.1e-27 124.8 83 74.7
Sabra06G0095200 Salix brachista HOM05D002585 ORTHO05D002917 6.1e-27 124.8 83 72.3
BcaC07g39674 Brassica carinata HOM05D002585 ORTHO05D002917 7.9e-27 124.4 83 72.3
C08p28400 Brassica napus HOM05D002585 ORTHO05D002917 7.9e-27 124.4 83 72.3
BolC8t50450H Brassica oleracea HOM05D002585 ORTHO05D002917 7.9e-27 124.4 83 72.3
Nitab4.5_0000132g0480 Nicotiana tabacum HOM05D002585 ORTHO05D002917 7.9e-27 124.4 87 70.1
Aqoxy195s007 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 1.0e-26 124.0 83 73.5
Aqoxy1G01087 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 1.0e-26 124.0 83 73.5
Nitab4.5_0005208g0050 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.0e-26 124.0 83 73.5
ECA233G1422 Erigeron canadensis HOM05D002585 ORTHO05D002917 1.3e-26 123.6 83 72.3
Lj3C991T4 Lonicera japonica HOM05D002585 ORTHO05D002917 1.3e-26 123.6 83 69.9
AT3G53180 Arabidopsis thaliana HOM05D002585 ORTHO05D002917 1.8e-26 123.2 83 69.9
BcaB01g00304 Brassica carinata HOM05D002585 ORTHO05D002917 1.8e-26 123.2 83 72.3
Gohir.A04G069800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.8e-26 123.2 83 71.1
Hma1.2p1_0547F.1_g176480 Hydrangea macrophylla HOM05D002585 ORTHO05D002917 1.8e-26 123.2 83 71.1
Sopen10g033280 Solanum pennellii HOM05D002585 ORTHO05D002917 3.0e-26 122.5 83 71.1
A07p21410 Brassica napus HOM05D002585 ORTHO05D002917 3.9e-26 122.1 83 69.9
FAN02G4184 Fragaria x ananassa HOM05D002585 ORTHO05D002917 3.9e-26 122.1 83 73.5
HanXRQChr05g0144541 Helianthus annuus HOM05D002585 ORTHO05D002917 3.9e-26 122.1 83 68.7
Solyc10g083840.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 3.9e-26 122.1 83 71.1
C06p21020 Brassica napus HOM05D002585 ORTHO05D002917 6.7e-26 121.3 84 70.2
THA.LOC104825825 Tarenaya hassleriana HOM05D002585 ORTHO05D002917 6.7e-26 121.3 83 71.1
FAN05G4263 Fragaria x ananassa HOM05D002585 ORTHO05D002917 8.8e-26 120.9 88 71.6
CANSAT35G1791 Cannabis sativa HOM05D002585 ORTHO05D002917 1.1e-25 120.6 83 67.5
CBR_g51531 Chara braunii HOM05D002585 ORTHO05D002917 1.1e-25 120.6 86 68.6
Nn6g35210 Nelumbo nucifera HOM05D002585 ORTHO05D002917 1.1e-25 120.6 83 71.1
RcHm_v2.0_Chr6g0260941 Rosa chinensis HOM05D002585 ORTHO05D002917 1.1e-25 120.6 82 73.2
Hund20555 Selenicereus undatus HOM05D002585 ORTHO05D002917 3.3e-25 119.0 79 73.4
CBR_g37575 Chara braunii HOM05D002585 ORTHO05D002917 4.3e-25 118.6 83 71.1
Sc20g0005720 Simmondsia chinensis HOM05D002585 ORTHO05D002917 7.4e-25 117.9 83 68.7
Lsat_1_v5_gn_8_145640 Lactuca sativa HOM05D002585 ORTHO05D002917 9.7e-25 117.5 83 68.7
Lj5g0007956 Lotus japonicus HOM05D002585 ORTHO05D002917 1.7e-24 116.7 80 72.5
Nitab4.5_0003945g0160 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.7e-24 116.7 87 65.5
HPP92_008392 Vanilla planifolia HOM05D002585 ORTHO05D002917 1.7e-24 116.7 79 72.2
arahy.Tifrunner.gnm1.ann1.7710RN Arachis hypogaea HOM05D002585 ORTHO05D002917 2.8e-24 115.9 83 71.1
arahy.Tifrunner.gnm1.ann1.7YQ2TW Arachis hypogaea HOM05D002585 ORTHO05D002917 2.8e-24 115.9 83 71.1
arahy.Tifrunner.gnm1.ann1.SIB7C5 Arachis hypogaea HOM05D002585 ORTHO05D002917 2.8e-24 115.9 83 71.1
arahy.Tifrunner.gnm1.ann1.YR6AFM Arachis hypogaea HOM05D002585 ORTHO05D002917 2.8e-24 115.9 83 71.1
SMO367G0811 Selaginella moellendorffii HOM05D002585 ORTHO05D002917 2.8e-24 115.9 83 65.1
AUR62026959 Chenopodium quinoa HOM05D002585 ORTHO05D002917 3.7e-24 115.5 83 69.9
AUR62041382 Chenopodium quinoa HOM05D002585 ORTHO05D002917 4.8e-24 115.2 82 69.5
Dinv35818 Davidia involucrata HOM05D002585 ORTHO05D002917 4.8e-24 115.2 83 67.5
Cc06_g04600 Coffea canephora HOM05D002585 ORTHO05D002917 8.2e-24 114.4 86 68.6
Peaxi162Scf00780g01019 Petunia axillaris HOM05D002585 ORTHO05D002917 8.2e-24 114.4 83 67.5
Peaxi162Scf00958g00520 Petunia axillaris HOM05D002585 ORTHO05D002917 8.2e-24 114.4 83 67.5
Solyc10g083850.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 1.8e-23 113.2 80 68.8
EL10Ac7g16696 Beta vulgaris HOM05D002585 ORTHO05D002917 2.4e-23 112.8 83 68.7
Sopen10g033290 Solanum pennellii HOM05D002585 ORTHO05D002917 3.1e-23 112.5 80 68.8
Nitab4.5_0008265g0020 Nicotiana tabacum HOM05D002585 ORTHO05D002917 4.1e-23 112.1 83 66.3
PGSC0003DMG400028277 Solanum tuberosum HOM05D002585 ORTHO05D002917 4.1e-23 112.1 80 67.5
unitig_8.g4719 Utricularia gibba HOM05D002585 ORTHO05D002917 4.1e-23 112.1 83 68.7
Gorai.002G160800 Gossypium raimondii HOM05D002585 ORTHO05D002917 5.3e-23 111.7 104 57.7
Ah.15g091400 Amaranthus hybridus HOM05D002585 ORTHO05D002917 9.1e-23 110.9 83 66.3
Nitab4.5_0000217g0060 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.0e-22 109.8 83 65.1
Nitab4.5_0004314g0020 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.0e-22 109.8 87 59.8
Nitab4.5_0000181g0090 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.6e-22 109.4 83 62.7
Solyc06g011290.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 3.4e-22 109.0 83 62.7
Sopen06g005510 Solanum pennellii HOM05D002585 ORTHO05D002917 3.4e-22 109.0 83 62.7
PGSC0003DMG400019014 Solanum tuberosum HOM05D002585 ORTHO05D002917 4.5e-22 108.6 85 63.5
Sopen01g025510 Solanum pennellii HOM05D002585 ORTHO05D002917 5.9e-22 108.2 85 62.4
Peaxi162Scf00529g00035 Petunia axillaris HOM05D002585 ORTHO05D002917 1.0e-21 107.5 83 62.7
Sopen01g019530 Solanum pennellii HOM05D002585 ORTHO05D002917 2.2e-21 106.3 85 62.4
Peaxi162Scf00247g00105 Petunia axillaris HOM05D002585 ORTHO05D002917 2.9e-21 105.9 83 63.9
PGSC0003DMG401009595 Solanum tuberosum HOM05D002585 ORTHO05D002917 2.9e-21 105.9 85 62.4
BcaC08g44624 Brassica carinata HOM05D002585 ORTHO05D002917 8.5e-21 104.4 110 52.7
Mapoly0010s0006 Marchantia polymorpha HOM05D002585 ORTHO05D002917 1.9e-20 103.2 80 62.5
Pp3c14_19260 Physcomitrium patens HOM05D002585 ORTHO05D002917 1.9e-20 103.2 83 59.0
Pp3c21_9940 Physcomitrium patens HOM05D002585 ORTHO05D002917 3.2e-20 102.4 83 56.6
Pp3c22_1270 Physcomitrium patens HOM05D002585 ORTHO05D002917 3.2e-20 102.4 83 56.6
Pp3c1_32960 Physcomitrium patens HOM05D002585 ORTHO05D002917 9.4e-20 100.9 83 57.8
Solyc01g056430.2 Solanum lycopersicum HOM05D002585 ORTHO05D002917 1.2e-19 100.5 80 61.2
Nitab4.5_0008230g0030 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.7e-19 99.4 81 63.0
Sed0022969 Sechium edule HOM05D002585 ORTHO05D002917 5.1e-18 95.1 79 62.0
Sed0020289 Sechium edule HOM05D002585 ORTHO05D002917 3.3e-17 92.4 79 60.8
Sed0005893 Sechium edule HOM05D002585 ORTHO05D002917 9.7e-17 90.9 79 59.5
CAN.G541.45 Capsicum annuum HOM05D002585 ORTHO05D002917 2.8e-16 89.4 107 45.8
Sed0005462 Sechium edule HOM05D002585 ORTHO05D002917 3.7e-16 89.0 79 59.5
Gohir.D01G129800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.8e-15 86.7 89 55.1
Sed0002653 Sechium edule HOM05D002585 ORTHO05D002917 2.9e-13 79.3 61 63.9
Solyc01g056400.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 1.4e-12 77.0 55 63.6
Cfa022823 Carpinus fangiana HOM05D002585 ORTHO05D002917 5.7e-09 65.1 85 38.8
QL07p042139 Quercus lobata HOM05D002585 ORTHO05D002917 7.7e-06 54.7 33 75.8


User provided reference genes

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