Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 3.1e-76 288.9 205 100.0
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 1.3e-71 273.5 205 94.6
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 1.9e-65 253.1 204 90.7
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 5.1e-63 245.0 204 89.7
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 8.2e-53 211.1 204 80.9
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 9.1e-52 207.6 203 80.8
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 2.0e-51 206.5 205 81.5
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 3.4e-51 205.7 202 80.2
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 3.4e-51 205.7 202 80.2
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 1.1e-49 200.7 205 76.1
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 2.5e-49 199.5 206 75.2
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 4.6e-48 195.3 205 72.2
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 7.9e-48 194.5 198 77.3
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 7.9e-48 194.5 204 71.1
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 1.4e-47 193.7 209 74.6
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 1.8e-47 193.4 202 77.7
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 5.1e-47 191.8 203 79.3
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 8.8e-47 191.0 207 74.9
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 8.8e-47 191.0 231 65.4
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 1.1e-46 190.7 210 67.1
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 1.5e-46 190.3 210 67.6
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 3.3e-46 189.1 207 75.4
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 7.4e-46 188.0 207 73.9
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 9.7e-46 187.6 202 74.8
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 9.7e-46 187.6 203 75.9
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 9.7e-46 187.6 204 71.6
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 2.2e-45 186.4 207 74.4
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 3.7e-45 185.7 208 69.2
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 6.3e-45 184.9 208 71.2
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 6.3e-45 184.9 206 73.3
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 6.3e-45 184.9 208 70.7
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 1.1e-44 184.1 206 75.2
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 1.8e-44 183.3 206 73.8
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 3.1e-44 182.6 206 74.3
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 5.3e-44 181.8 206 73.3
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 6.9e-44 181.4 207 74.4
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 6.9e-44 181.4 207 73.9
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 9.1e-44 181.0 204 73.5
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.5e-43 180.3 204 74.0
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 2.6e-43 179.5 204 73.0
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 3.4e-43 179.1 206 72.8
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 7.7e-43 177.9 201 71.1
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 1.7e-42 176.8 207 72.0
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 3.8e-42 175.6 205 64.4
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 3.2e-41 172.6 180 79.4
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 3.2e-41 172.6 200 70.0
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 5.5e-41 171.8 205 72.7
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 9.4e-41 171.0 205 71.7
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 1.6e-40 170.2 200 69.5
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 2.7e-40 169.5 192 73.4
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 3.6e-40 169.1 204 59.8
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 7.9e-40 167.9 213 70.4
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 1.4e-39 167.2 200 71.5
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 3.9e-39 165.6 208 70.7
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 6.7e-39 164.9 200 74.0
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 6.7e-39 164.9 187 74.3
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 1.1e-38 164.1 226 67.3
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 2.6e-38 162.9 210 62.9
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 2.6e-38 162.9 210 62.9
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 3.3e-38 162.5 207 69.6
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 3.3e-38 162.5 207 69.6
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 9.7e-38 161.0 181 76.2
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 1.3e-37 160.6 194 71.6
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 2.8e-37 159.5 206 70.4
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 2.8e-37 159.5 194 71.1
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 3.7e-37 159.1 205 69.3
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 6.3e-37 158.3 142 73.9
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 8.2e-37 157.9 205 68.8
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 8.2e-37 157.9 203 70.4
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 1.1e-36 157.5 205 68.3
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 4.1e-36 155.6 207 69.1
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 9.1e-36 154.5 199 67.8
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 2.0e-35 153.3 200 63.5
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 4.5e-35 152.1 200 62.5
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 1.0e-34 151.0 199 64.3
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 1.3e-34 150.6 206 64.6
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 3.8e-34 149.1 196 70.4
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 5.0e-34 148.7 200 64.5
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 1.5e-33 147.1 206 66.0
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 2.5e-33 146.4 199 61.3
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 2.5e-33 146.4 200 68.5
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 3.2e-33 146.0 203 68.0
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 2.1e-32 143.3 202 67.3
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 3.6e-32 142.5 200 66.0
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 6.1e-32 141.7 203 43.8
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 6.1e-32 141.7 202 66.3
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 1.0e-31 141.0 202 62.9
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 1.0e-31 141.0 203 43.3
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 2.3e-31 139.8 209 58.4
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 2.3e-31 139.8 200 53.5
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 4.0e-31 139.0 180 55.0
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 4.0e-31 139.0 202 43.1
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 4.0e-31 139.0 202 43.1
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 4.0e-31 139.0 190 66.3
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 4.0e-31 139.0 190 67.9
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 8.8e-31 137.9 190 63.7
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 2.6e-30 136.3 255 43.9
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 3.3e-30 136.0 191 44.5
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 3.3e-30 136.0 199 60.3
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 5.7e-30 135.2 200 64.0
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 1.3e-29 134.0 207 62.8
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 2.2e-29 133.3 206 64.1
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 2.8e-29 132.9 199 49.7
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 3.7e-29 132.5 205 62.0
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 4.8e-29 132.1 192 65.1
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 8.2e-29 131.3 200 49.0
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 1.8e-28 130.2 210 53.3
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 1.8e-28 130.2 198 60.1
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 1.8e-28 130.2 202 63.9
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 1.0e-26 124.4 203 63.5
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.9e-25 120.2 202 50.5
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 1.6e-24 117.1 195 61.5
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 1.4e-23 114.0 200 40.0
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 1.5e-22 110.5 148 75.0
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.7e-21 107.1 102 60.8
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 4.8e-21 105.5 212 44.3
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 4.8e-21 105.5 212 44.3
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 4.1e-20 102.4 206 45.6
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 7.0e-20 101.7 200 41.0
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 7.0e-20 101.7 200 41.0
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 4.5e-19 99.0 200 40.5
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 1.0e-18 97.8 198 55.1
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 5.0e-18 95.5 198 52.5
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 5.0e-18 95.5 198 52.5
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 5.0e-18 95.5 200 40.0
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 5.0e-18 95.5 198 52.5
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 5.0e-18 95.5 198 52.5
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 5.0e-18 95.5 89 57.3
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 1.9e-17 93.6 198 54.5
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 1.9e-17 93.6 198 54.5
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 7.2e-17 91.7 79 87.3
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 9.5e-17 91.3 159 60.4
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 4.0e-15 85.9 139 67.6
Psat6g104720 Pisum sativum HOM05D001839 ORTHO05D001867 4.0e-15 85.9 154 39.6
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 2.6e-14 83.2 150 65.3
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 3.4e-14 82.8 202 38.6
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 3.4e-14 82.8 149 66.4
Ah.14g078370 Amaranthus hybridus HOM05D005036 ORTHO05D005881 5.7e-14 82.0 79 57.0
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 8.3e-13 78.2 138 46.4
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.8e-12 77.0 141 44.0
MD04G1089000 Malus domestica HOM05D005036 ORTHO05D005881 3.1e-12 76.3 117 61.5
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 4.1e-12 75.9 101 41.6
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 2.0e-11 73.6 48 68.8
Lj3C990T8 Lonicera japonica HOM05D005036 ORTHO05D005881 2.7e-11 73.2 59 64.4
MCO14G431 Micromonas commoda HOM05D005036 ORTHO05D005881 6.1e-08 62.0 58 46.6
Cre06.g283300 Chlamydomonas reinhardtii HOM05D005036 ORTHO05D005881 4.4e-06 55.8 79 41.8
CBR_g37530 Chara braunii HOM05D002729 ORTHO05D003163 9.8e-06 54.7 61 44.3


User provided reference genes

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