Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G143500 Glycine max HOM05D005747 ORTHO05D007159 1.0e-54 216.5 107 100.0
Glyma.10G057000 Glycine max HOM05D005747 ORTHO05D007159 1.5e-53 212.6 107 97.2
arahy.Tifrunner.gnm1.ann1.548B55 Arachis hypogaea HOM05D005747 ORTHO05D007159 3.9e-46 188.0 107 86.0
arahy.Tifrunner.gnm1.ann1.GC88CS Arachis hypogaea HOM05D005747 ORTHO05D007159 5.1e-46 187.6 107 85.0
Prupe.6G232700 Prunus persica HOM05D005747 ORTHO05D007159 5.1e-46 187.6 107 84.1
arahy.Tifrunner.gnm1.ann1.47U1LD Arachis hypogaea HOM05D005747 ORTHO05D007159 8.6e-46 186.8 107 85.0
arahy.Tifrunner.gnm1.ann1.W5J3RK Arachis hypogaea HOM05D005747 ORTHO05D007159 1.5e-45 186.0 107 85.0
Haze_20552 Corylus avellana HOM05D005747 ORTHO05D007159 3.3e-45 184.9 107 84.1
Lj5g0010104 Lotus japonicus HOM05D005747 ORTHO05D007159 4.3e-45 184.5 107 86.0
Glyma.19G183500 Glycine max HOM05D005747 ORTHO05D007159 5.6e-45 184.1 107 83.2
Manes.08G009800 Manihot esculenta HOM05D005747 ORTHO05D007159 7.3e-45 183.7 107 81.3
Lalb_Chr02g0155891 Lupinus albus HOM05D005747 ORTHO05D007159 2.1e-44 182.2 107 80.4
Cfa020071 Carpinus fangiana HOM05D005747 ORTHO05D007159 3.6e-44 181.4 107 83.2
QL07p043606 Quercus lobata HOM05D005747 ORTHO05D007159 3.6e-44 181.4 106 83.0
Phvul.007G149300 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 4.7e-44 181.0 107 84.1
PGR004G0006 Punica granatum HOM05D005747 ORTHO05D007159 4.7e-44 181.0 107 82.2
Haze_20124 Corylus avellana HOM05D005747 ORTHO05D007159 8.1e-44 180.3 107 82.2
RcHm_v2.0_Chr3g0470141 Rosa chinensis HOM05D005747 ORTHO05D007159 8.1e-44 180.3 105 82.9
MD12G1113800 Malus domestica HOM05D005747 ORTHO05D007159 1.8e-43 179.1 107 81.3
Thecc.05G065200 Theobroma cacao HOM05D005747 ORTHO05D007159 2.4e-43 178.7 107 79.4
Phvul.001G178800 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 4.0e-43 177.9 107 79.4
MD04G1094200 Malus domestica HOM05D005747 ORTHO05D007159 6.8e-43 177.2 107 79.4
Psat6g073040 Pisum sativum HOM05D005747 ORTHO05D007159 6.8e-43 177.2 107 79.4
Actinidia08777 Actinidia chinensis HOM05D005747 ORTHO05D007159 8.9e-43 176.8 105 79.0
Duzib093G2107 Durio zibethinus HOM05D005747 ORTHO05D007159 1.5e-42 176.0 107 78.5
TPR.G25697 Trifolium pratense HOM05D005747 ORTHO05D007159 2.0e-42 175.6 101 83.2
VMungo1383G0680 Vigna mungo HOM05D005747 ORTHO05D007159 2.6e-42 175.3 107 80.4
Eucgr.A01688 Eucalyptus grandis HOM05D005747 ORTHO05D007159 3.4e-42 174.9 107 78.5
Actinidia28901 Actinidia chinensis HOM05D005747 ORTHO05D007159 4.4e-42 174.5 105 78.1
FAN05G2010 Fragaria x ananassa HOM05D005747 ORTHO05D007159 4.4e-42 174.5 105 80.0
TPR.G9369 Trifolium pratense HOM05D005747 ORTHO05D007159 5.8e-42 174.1 107 79.4
Potri.006G125300 Populus trichocarpa HOM05D005747 ORTHO05D007159 7.6e-42 173.7 105 78.1
vmacro07288 Vaccinium macrocarpon HOM05D005747 ORTHO05D007159 7.6e-42 173.7 105 79.0
Medtr1g063370 Medicago truncatula HOM05D005747 ORTHO05D007159 9.9e-42 173.3 107 79.4
Duzib128G1360 Durio zibethinus HOM05D005747 ORTHO05D007159 1.3e-41 172.9 107 77.6
Psat0s2933g0080 Pisum sativum HOM05D005747 ORTHO05D007159 1.7e-41 172.6 107 77.6
Ca_11494_v3 Cicer arietinum L. HOM05D005747 ORTHO05D007159 2.2e-41 172.2 107 80.4
FvH4_6g16280 Fragaria vesca HOM05D005747 ORTHO05D007159 2.2e-41 172.2 105 78.1
FAN14G5754 Fragaria x ananassa HOM05D005747 ORTHO05D007159 2.2e-41 172.2 105 78.1
Lalb_Chr20g0112621 Lupinus albus HOM05D005747 ORTHO05D007159 2.9e-41 171.8 107 77.6
Rhsim03G0092400 Rhododendron simsii HOM05D005747 ORTHO05D007159 2.9e-41 171.8 105 78.1
FAN02G1695 Fragaria x ananassa HOM05D005747 ORTHO05D007159 3.8e-41 171.4 105 78.1
CSS0033757 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 4.9e-41 171.0 105 77.1
Ciclev10013173m.g Citrus clementina HOM05D005747 ORTHO05D007159 4.9e-41 171.0 105 79.0
Migut.L01698 Erythranthe guttata HOM05D005747 ORTHO05D007159 4.9e-41 171.0 105 76.2
Gohir.D09G143100 Gossypium hirsutum HOM05D005747 ORTHO05D007159 4.9e-41 171.0 107 78.5
Gorai.006G164600 Gossypium raimondii HOM05D005747 ORTHO05D007159 4.9e-41 171.0 107 78.5
Medtr7g101880 Medicago truncatula HOM05D005747 ORTHO05D007159 4.9e-41 171.0 101 80.2
TAR369G0407 Trochodendron aralioides HOM05D005747 ORTHO05D007159 4.9e-41 171.0 105 77.1
FAN09G1333 Fragaria x ananassa HOM05D005747 ORTHO05D007159 6.4e-41 170.6 105 78.1
Atru.chr8.1820 Acer truncatum HOM05D005747 ORTHO05D007159 8.4e-41 170.2 105 79.0
THA.LOC104826911 Tarenaya hassleriana HOM05D005747 ORTHO05D007159 8.4e-41 170.2 105 76.2
TWI74G1168 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 8.4e-41 170.2 107 78.5
Gohir.A09G147500 Gossypium hirsutum HOM05D005747 ORTHO05D007159 1.1e-40 169.9 107 78.5
MSTRG.19175 Avicennia marina HOM05D005747 ORTHO05D007159 1.9e-40 169.1 104 77.9
PSO063G6473 Papaver somniferum HOM05D005747 ORTHO05D007159 1.9e-40 169.1 105 78.1
PSO339G2391 Papaver somniferum HOM05D005747 ORTHO05D007159 1.9e-40 169.1 105 78.1
Peaxi162Scf00701g00029 Petunia axillaris HOM05D005747 ORTHO05D007159 1.9e-40 169.1 105 74.3
CAN.G900.40 Capsicum annuum HOM05D005747 ORTHO05D007159 4.1e-40 167.9 105 72.4
Cc06_g04180 Coffea canephora HOM05D005747 ORTHO05D007159 4.1e-40 167.9 105 76.2
Hma1.2p1_0205F.1_g087080 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 4.1e-40 167.9 104 80.8
Thhalv10015093m.g Eutrema salsugineum HOM05D005747 ORTHO05D007159 5.4e-40 167.5 103 76.7
GSVIVG01025728001 Vitis vinifera HOM05D005747 ORTHO05D007159 5.4e-40 167.5 107 77.6
Aa31LG3G2310 Aethionema arabicum HOM05D005747 ORTHO05D007159 9.2e-40 166.8 105 74.3
CSS0022084 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 9.2e-40 166.8 105 77.1
CSS0033637 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.2e-39 166.4 105 77.1
EL10Ac1g00026 Beta vulgaris HOM05D005747 ORTHO05D007159 1.6e-39 166.0 105 78.1
CANSAT80G0760 Cannabis sativa HOM05D005747 ORTHO05D007159 1.6e-39 166.0 107 76.6
SGA_v2.0_scaffold75G24844 Striga asiatica HOM05D005747 ORTHO05D007159 2.1e-39 165.6 103 76.7
Nn7g38309 Nelumbo nucifera HOM05D005747 ORTHO05D007159 3.5e-39 164.9 107 76.6
Manes.09G066900 Manihot esculenta HOM05D005747 ORTHO05D007159 4.6e-39 164.5 107 73.8
Solyc09g008140.3 Solanum lycopersicum HOM05D005747 ORTHO05D007159 4.6e-39 164.5 105 72.4
Sopen09g002940 Solanum pennellii HOM05D005747 ORTHO05D007159 4.6e-39 164.5 105 72.4
TWI77G0618 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 4.6e-39 164.5 107 77.6
TAR633G0139 Trochodendron aralioides HOM05D005747 ORTHO05D007159 4.6e-39 164.5 105 76.2
Dinv37311 Davidia involucrata HOM05D005747 ORTHO05D007159 7.8e-39 163.7 105 79.0
MELO3C009353.2 Cucumis melo HOM05D005747 ORTHO05D007159 1.0e-38 163.3 107 74.8
CARHR210000 Cardamine hirsuta HOM05D005747 ORTHO05D007159 3.0e-38 161.8 103 74.8
CsaV3_3G035950 Cucumis sativus L. HOM05D005747 ORTHO05D007159 3.0e-38 161.8 107 72.9
C02p00970 Brassica napus HOM05D001005 ORTHO05D000836 5.1e-38 161.0 103 74.8
AL6G12680 Arabidopsis lyrata HOM05D005747 ORTHO05D007159 6.6e-38 160.6 103 73.8
ClCG10G020160 Citrullus lanatus HOM05D005747 ORTHO05D007159 6.6e-38 160.6 107 72.9
Sp6g39390 Schrenkiella parvula HOM05D005747 ORTHO05D007159 6.6e-38 160.6 103 74.8
BcaC03g13014 Brassica carinata HOM05D005747 ORTHO05D007159 1.5e-37 159.5 103 73.8
Glyma.03G182900 Glycine max HOM05D005747 ORTHO05D007159 1.5e-37 159.5 136 64.0
Aqoxy1G01163 Aquilegia oxysepala HOM05D005747 ORTHO05D007159 1.9e-37 159.1 105 70.5
Potri.016G091900 Populus trichocarpa HOM05D005747 ORTHO05D007159 1.9e-37 159.1 105 72.4
Carub.0006s0216 Capsella rubella HOM05D005747 ORTHO05D007159 2.5e-37 158.7 103 72.8
Sed0019850 Sechium edule HOM05D005747 ORTHO05D007159 3.3e-37 158.3 107 72.0
AT5G03345 Arabidopsis thaliana HOM05D005747 ORTHO05D007159 5.6e-37 157.5 103 71.8
SalBow5G0179 Salvia bowleyana HOM05D005747 ORTHO05D007159 1.2e-36 156.4 105 69.5
SalBow5G1412 Salvia bowleyana HOM05D005747 ORTHO05D007159 1.2e-36 156.4 105 69.5
Zm00001eb028740 Zea mays HOM05D005747 ORTHO05D007159 8.1e-36 153.7 105 69.5
Sc02g0001670 Simmondsia chinensis HOM05D005747 ORTHO05D007159 1.4e-35 152.9 105 69.5
Zm00001eb136890 Zea mays HOM05D005747 ORTHO05D007159 1.4e-35 152.9 104 70.2
Os12g0566400 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 5.2e-35 151.0 105 67.6
Ah.05g172440 Amaranthus hybridus HOM05D005747 ORTHO05D007159 5.8e-34 147.5 105 68.6
unitig_578.g16384 Utricularia gibba HOM05D005747 ORTHO05D007159 2.9e-33 145.2 99 67.7
HPP92_009808 Vanilla planifolia HOM05D005747 ORTHO05D007159 4.9e-33 144.4 92 77.2
Gorai.006G061900 Gossypium raimondii HOM05D005747 ORTHO05D007159 8.4e-33 143.7 109 68.8
Nitab4.5_0000578g0140 Nicotiana tabacum HOM05D005747 ORTHO05D007159 8.4e-33 143.7 105 65.7
Nitab4.5_0002632g0020 Nicotiana tabacum HOM05D005747 ORTHO05D007159 8.4e-33 143.7 105 65.7
PGSC0003DMG400003860 Solanum tuberosum HOM05D005747 ORTHO05D007159 1.4e-32 142.9 133 54.9
ECA233G4120 Erigeron canadensis HOM05D005747 ORTHO05D007159 2.7e-31 138.7 102 64.7
Lsat_1_v5_gn_6_25181 Lactuca sativa HOM05D005747 ORTHO05D007159 1.0e-30 136.7 102 64.7
CDE06G0870 Ceratophyllum demersum HOM05D005747 ORTHO05D007159 3.9e-30 134.8 94 68.1
HanXRQChr13g0401071 Helianthus annuus HOM05D005747 ORTHO05D007159 3.3e-29 131.7 105 59.0
Hma1.2p1_0205F.1_g087090 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 6.2e-28 127.5 98 69.4
Mapoly0011s0153 Marchantia polymorpha HOM05D005747 ORTHO05D007159 1.1e-27 126.7 103 59.2
HanXRQChr02g0051611 Helianthus annuus HOM05D005747 ORTHO05D007159 2.4e-27 125.6 104 58.7
Hund20347 Selenicereus undatus HOM05D005747 ORTHO05D007159 5.3e-27 124.4 77 76.6
SEGI_15519 Sequoiadendron giganteum HOM05D005747 ORTHO05D007159 5.3e-27 124.4 92 64.1
Oeu053677.1 Olea europaea HOM05D005747 ORTHO05D007159 9.0e-27 123.6 78 76.9
Lj2A1109T71 Lonicera japonica HOM05D005747 ORTHO05D007159 1.5e-26 122.9 91 65.9
SMO137G0056 Selaginella moellendorffii HOM05D005747 ORTHO05D007159 7.6e-26 120.6 100 57.0
Sabra16G0097500 Salix brachista HOM05D005747 ORTHO05D007159 6.4e-25 117.5 74 71.6
CSS0043170 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.1e-24 116.7 70 82.9
Oeu045224.1 Olea europaea HOM05D005747 ORTHO05D007159 4.2e-24 114.8 86 68.6
CSS0041044 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 9.3e-24 113.6 70 81.4
DCAR_020822 Daucus carota HOM05D005747 ORTHO05D007159 1.2e-23 113.2 76 72.4
AagrBONN_evm.TU.Sc2ySwM_362.1648 Anthoceros agrestis HOM05D005747 ORTHO05D007159 2.1e-23 112.5 90 57.8
Pp3c6_8930 Physcomitrium patens HOM05D005747 ORTHO05D007159 6.0e-23 110.9 91 58.2
Pp3c5_16080 Physcomitrium patens HOM05D005747 ORTHO05D007159 7.9e-23 110.5 96 55.2
CiPaw.09G219400 Carya illinoinensis HOM05D005747 ORTHO05D007159 5.6e-21 104.4 106 57.5
Sed0003931 Sechium edule HOM05D005747 ORTHO05D007159 1.3e-20 103.2 68 69.1
AUR62023620 Chenopodium quinoa HOM05D005747 ORTHO05D007159 3.7e-20 101.7 113 54.0
AUR62004704 Chenopodium quinoa HOM05D005747 ORTHO05D007159 1.1e-19 100.1 105 54.3
ATR0104G002 Amborella trichopoda HOM05D005747 ORTHO05D007159 1.4e-19 99.8 79 62.0
Lalb_Chr02g0156001 Lupinus albus HOM05D005747 ORTHO05D007159 1.2e-15 86.7 82 59.8
Dinv35784 Davidia involucrata HOM05D005747 ORTHO05D007159 2.7e-15 85.5 50 84.0
COL.COLO4_26972 Corchorus olitorius HOM05D005747 ORTHO05D007159 5.6e-13 77.8 45 75.6
Lalb_Chr25g0289001 Lupinus albus HOM05D005747 ORTHO05D007159 3.1e-11 72.0 45 77.8
MCO03G507 Micromonas commoda HOM05D005747 ORTHO05D007159 1.2e-10 70.1 82 42.7
Os11g0568633 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 3.8e-09 65.1 42 64.3


User provided reference genes

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