Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G142300 Glycine max HOM05D006449 ORTHO05D007995 2.2e-66 255.4 120 100.0
Glyma.10G055200 Glycine max HOM05D006449 ORTHO05D007995 1.8e-63 245.7 120 93.3
Phvul.007G219000 Phaseolus vulgaris HOM05D006449 ORTHO05D007995 9.6e-62 240.0 120 90.8
VMungo0720G3134 Vigna mungo HOM05D006449 ORTHO05D007995 9.6e-62 240.0 120 91.7
Lj5g0001377 Lotus japonicus HOM05D006449 ORTHO05D007995 1.1e-60 236.5 120 91.7
CSS0028691 Camellia sinensis var. sinensis HOM05D006449 ORTHO05D007995 2.0e-59 232.3 120 86.7
Nn2g13802 Nelumbo nucifera HOM05D006449 ORTHO05D007995 1.7e-58 229.2 120 87.5
Nn6g35286 Nelumbo nucifera HOM05D006449 ORTHO05D007995 4.9e-58 227.6 120 86.7
AUR62042508 Chenopodium quinoa HOM05D006449 ORTHO05D007995 3.2e-57 224.9 120 85.8
CiPaw.10G129500 Carya illinoinensis HOM05D006449 ORTHO05D007995 9.3e-57 223.4 118 83.9
CsaV3_6G039970 Cucumis sativus L. HOM05D006449 ORTHO05D007995 9.3e-57 223.4 120 84.2
AUR62040339 Chenopodium quinoa HOM05D006449 ORTHO05D007995 1.6e-56 222.6 120 85.0
Actinidia08770 Actinidia chinensis HOM05D006449 ORTHO05D007995 3.5e-56 221.5 120 82.5
Hma1.2p1_0205F.1_g086990 Hydrangea macrophylla HOM05D006449 ORTHO05D007995 6.0e-56 220.7 120 85.8
Manes.09G065800 Manihot esculenta HOM05D006449 ORTHO05D007995 7.9e-56 220.3 120 83.3
PGR004G0793 Punica granatum HOM05D006449 ORTHO05D007995 1.8e-55 219.2 120 84.2
Ca_11505_v3 Cicer arietinum L. HOM05D006449 ORTHO05D007995 3.9e-55 218.0 120 83.3
Medtr1g063190 Medicago truncatula HOM05D006449 ORTHO05D007995 6.7e-55 217.2 120 81.7
Nitab4.5_0003861g0010 Nicotiana tabacum HOM05D006449 ORTHO05D007995 2.5e-54 215.3 119 81.5
EL10Ac7g16636 Beta vulgaris HOM05D006449 ORTHO05D007995 3.3e-54 214.9 120 81.7
ClCG04G009390 Citrullus lanatus HOM05D006449 ORTHO05D007995 3.3e-54 214.9 120 81.7
CAN.G900.29 Capsicum annuum HOM05D006449 ORTHO05D007995 7.4e-54 213.8 119 79.8
Nitab4.5_0000814g0040 Nicotiana tabacum HOM05D006449 ORTHO05D007995 7.4e-54 213.8 119 79.8
Psat6g074040 Pisum sativum HOM05D006449 ORTHO05D007995 7.4e-54 213.8 120 80.0
Duzib093G0849 Durio zibethinus HOM05D006449 ORTHO05D007995 9.7e-54 213.4 120 81.7
HanXRQChr15g0491571 Helianthus annuus HOM05D006449 ORTHO05D007995 9.7e-54 213.4 120 81.7
Sed0015731 Sechium edule HOM05D006449 ORTHO05D007995 9.7e-54 213.4 120 80.0
Thecc.05G067500 Theobroma cacao HOM05D006449 ORTHO05D007995 9.7e-54 213.4 120 81.7
PGSC0003DMG400003863 Solanum tuberosum HOM05D006449 ORTHO05D007995 1.3e-53 213.0 119 80.7
Gorai.002G246900 Gossypium raimondii HOM05D006449 ORTHO05D007995 1.6e-53 212.6 120 81.7
DCAR_015000 Daucus carota HOM05D006449 ORTHO05D007995 2.2e-53 212.2 121 82.6
TWI77G0881 Tripterygium wilfordii HOM05D006449 ORTHO05D007995 2.2e-53 212.2 118 82.2
MSTRG.5764 Avicennia marina HOM05D006449 ORTHO05D007995 2.8e-53 211.8 120 80.8
Solyc09g008230.3 Solanum lycopersicum HOM05D006449 ORTHO05D007995 2.8e-53 211.8 119 79.8
Sopen09g003050 Solanum pennellii HOM05D006449 ORTHO05D007995 2.8e-53 211.8 119 79.8
TWI74G0214 Tripterygium wilfordii HOM05D006449 ORTHO05D007995 4.8e-53 211.1 118 81.4
Gohir.A01G213500 Gossypium hirsutum HOM05D006449 ORTHO05D007995 6.3e-53 210.7 120 80.8
Aqoxy1G01150 Aquilegia oxysepala HOM05D006449 ORTHO05D007995 8.2e-53 210.3 120 81.7
Peaxi162Scf00311g00119 Petunia axillaris HOM05D006449 ORTHO05D007995 1.1e-52 209.9 119 79.0
Potri.016G093500 Populus trichocarpa HOM05D006449 ORTHO05D007995 1.1e-52 209.9 123 83.7
TPR.G11267 Trifolium pratense HOM05D006449 ORTHO05D007995 1.8e-52 209.1 120 78.3
Oeu041490.2 Olea europaea HOM05D006449 ORTHO05D007995 3.1e-52 208.4 127 77.2
Gohir.D01G202200 Gossypium hirsutum HOM05D006449 ORTHO05D007995 4.1e-52 208.0 120 80.8
GSVIVG01033644001 Vitis vinifera HOM05D006449 ORTHO05D007995 9.0e-52 206.8 121 81.0
Sabra16G0098600 Salix brachista HOM05D006449 ORTHO05D007995 1.5e-51 206.1 123 80.5
CSS0018897 Camellia sinensis var. sinensis HOM05D006449 ORTHO05D007995 2.0e-51 205.7 132 73.5
Hund26578 Selenicereus undatus HOM05D006449 ORTHO05D007995 2.6e-51 205.3 120 78.3
CDE09G0874 Ceratophyllum demersum HOM05D006449 ORTHO05D007995 3.4e-51 204.9 120 79.2
Atru.chr8.1798 Acer truncatum HOM05D006449 ORTHO05D007995 1.3e-50 203.0 118 77.1
Hund20380 Selenicereus undatus HOM05D006449 ORTHO05D007995 1.7e-50 202.6 120 77.5
FAN05G0981 Fragaria x ananassa HOM05D006449 ORTHO05D007995 2.2e-50 202.2 122 77.9
FAN14G2797 Fragaria x ananassa HOM05D006449 ORTHO05D007995 2.2e-50 202.2 122 77.9
FAN14G3008 Fragaria x ananassa HOM05D006449 ORTHO05D007995 2.2e-50 202.2 122 77.9
THA.LOC104823475 Tarenaya hassleriana HOM05D006449 ORTHO05D007995 2.2e-50 202.2 118 79.7
Peaxi162Scf00638g00414 Petunia axillaris HOM05D006449 ORTHO05D007995 2.9e-50 201.8 119 79.0
ECA248G0052 Erigeron canadensis HOM05D006449 ORTHO05D007995 5.0e-50 201.1 120 79.2
Thhalv10017435m.g Eutrema salsugineum HOM05D006449 ORTHO05D007995 6.5e-50 200.7 115 78.3
FvH4_6g16440 Fragaria vesca HOM05D006449 ORTHO05D007995 8.5e-50 200.3 121 76.9
unitig_749.g14285 Utricularia gibba HOM05D006449 ORTHO05D007995 8.5e-50 200.3 119 79.0
AT2G36930 Arabidopsis thaliana HOM05D006449 ORTHO05D007995 1.1e-49 199.9 116 77.6
BcaB01g03807 Brassica carinata HOM05D006449 ORTHO05D007995 1.1e-49 199.9 116 77.6
FAN02G2429 Fragaria x ananassa HOM05D006449 ORTHO05D007995 1.1e-49 199.9 122 77.0
BcaB02g09320 Brassica carinata HOM05D006449 ORTHO05D007995 2.5e-49 198.7 116 76.7
BcaC02g11815 Brassica carinata HOM05D006449 ORTHO05D007995 2.5e-49 198.7 116 76.7
SEGI_04945 Sequoiadendron giganteum HOM05D006449 ORTHO05D007995 2.5e-49 198.7 116 77.6
A05p08950 Brassica napus HOM05D006449 ORTHO05D007995 3.2e-49 198.4 116 76.7
C04p11060 Brassica napus HOM05D006449 ORTHO05D007995 3.2e-49 198.4 116 76.7
BolC4t22754H Brassica oleracea HOM05D006449 ORTHO05D007995 3.2e-49 198.4 116 76.7
BraA05t19857Z Brassica rapa HOM05D006449 ORTHO05D007995 3.2e-49 198.4 116 76.7
RcHm_v2.0_Chr3g0470301 Rosa chinensis HOM05D006449 ORTHO05D007995 3.2e-49 198.4 122 77.0
CARHR131400 Cardamine hirsuta HOM05D006449 ORTHO05D007995 4.2e-49 198.0 118 74.6
AL4G33170 Arabidopsis lyrata HOM05D006449 ORTHO05D007995 5.5e-49 197.6 116 75.9
A03p20330 Brassica napus HOM05D006449 ORTHO05D007995 1.2e-48 196.4 116 75.9
BraA03t11279Z Brassica rapa HOM05D006449 ORTHO05D007995 1.2e-48 196.4 116 75.9
Sp4g19220 Schrenkiella parvula HOM05D006449 ORTHO05D007995 1.6e-48 196.1 116 75.9
BcaC01g05620 Brassica carinata HOM05D006449 ORTHO05D007995 2.1e-48 195.7 116 75.9
C03p23890 Brassica napus HOM05D006449 ORTHO05D007995 2.1e-48 195.7 116 75.9
BolC3t14781H Brassica oleracea HOM05D006449 ORTHO05D007995 2.1e-48 195.7 116 75.9
Carub.0004s1878 Capsella rubella HOM05D006449 ORTHO05D007995 7.9e-48 193.7 116 75.9
Lsat_1_v5_gn_1_52340 Lactuca sativa HOM05D006449 ORTHO05D007995 5.1e-47 191.0 120 75.0
Os08g0564500 Oryza sativa ssp. japonica HOM05D006449 ORTHO05D007995 7.4e-46 187.2 125 71.2
Zm00001eb038700 Zea mays HOM05D006449 ORTHO05D007995 1.4e-44 183.0 125 69.6
Cfa017617 Carpinus fangiana HOM05D006449 ORTHO05D007995 2.4e-44 182.2 130 70.0
QL07p043219 Quercus lobata HOM05D006449 ORTHO05D007995 7.7e-43 177.2 88 88.6
Lalb_Chr02g0155801 Lupinus albus HOM05D006449 ORTHO05D007995 6.5e-42 174.1 89 88.8
Aa31LG5G22150 Aethionema arabicum HOM05D006449 ORTHO05D007995 1.4e-41 172.9 118 70.3
Mapoly0185s0018 Marchantia polymorpha HOM05D006449 ORTHO05D007995 1.4e-41 172.9 115 68.7
Rhsim03G0091200 Rhododendron simsii HOM05D006449 ORTHO05D007995 2.5e-41 172.2 91 84.6
HanXRQChr01g0027751 Helianthus annuus HOM05D006449 ORTHO05D007995 3.2e-41 171.8 91 83.5
arahy.Tifrunner.gnm1.ann1.9GBJ25 Arachis hypogaea HOM05D006449 ORTHO05D007995 6.1e-40 167.5 86 90.7
arahy.Tifrunner.gnm1.ann1.D9FX9P Arachis hypogaea HOM05D006449 ORTHO05D007995 6.1e-40 167.5 86 90.7
Sabra06G0098200 Salix brachista HOM05D006449 ORTHO05D007995 6.1e-40 167.5 92 83.7
Pp3c13_22060 Physcomitrium patens HOM05D006449 ORTHO05D007995 1.8e-39 166.0 115 64.3
SGA_v2.0_scaffold75G24848 Striga asiatica HOM05D006449 ORTHO05D007995 8.8e-39 163.7 91 81.3
ATR0219G007 Amborella trichopoda HOM05D006449 ORTHO05D007995 1.1e-38 163.3 89 79.8
SGA_v2.0_scaffold40G15520 Striga asiatica HOM05D006449 ORTHO05D007995 2.6e-38 162.2 91 81.3
MELO3C024474.2 Cucumis melo HOM05D006449 ORTHO05D007995 3.3e-38 161.8 89 80.9
COL.COLO4_26955 Corchorus olitorius HOM05D006449 ORTHO05D007995 9.7e-38 160.2 101 72.3
PSO063G3287 Papaver somniferum HOM05D006449 ORTHO05D007995 3.7e-37 158.3 115 66.1
PSO339G4301 Papaver somniferum HOM05D006449 ORTHO05D007995 3.7e-37 158.3 115 66.1
CANSAT80G0535 Cannabis sativa HOM05D006449 ORTHO05D007995 1.4e-36 156.4 89 80.9
Sc20g0005520 Simmondsia chinensis HOM05D006449 ORTHO05D007995 4.1e-36 154.8 86 80.2
MD12G1112600 Malus domestica HOM05D006449 ORTHO05D007995 1.2e-35 153.3 89 77.5
Nitab4.5_0029554g0010 Nicotiana tabacum HOM05D006449 ORTHO05D007995 1.5e-35 152.9 91 73.6
vmacro07293 Vaccinium macrocarpon HOM05D006449 ORTHO05D007995 2.6e-35 152.1 98 74.5
Cc06_g04250 Coffea canephora HOM05D006449 ORTHO05D007995 3.5e-35 151.8 76 89.5
Haze_20546 Corylus avellana HOM05D006449 ORTHO05D007995 3.5e-35 151.8 100 73.0
MD00G1155400 Malus domestica HOM05D006449 ORTHO05D007995 7.7e-35 150.6 89 76.4
Migut.J00654 Erythranthe guttata HOM05D006449 ORTHO05D007995 1.3e-34 149.8 86 77.9
Potri.006G124100 Populus trichocarpa HOM05D006449 ORTHO05D007995 3.8e-34 148.3 74 90.5
Ciclev10013228m.g Citrus clementina HOM05D006449 ORTHO05D007995 7.2e-33 144.1 84 77.4
Oeu005023.1 Olea europaea HOM05D006449 ORTHO05D007995 2.7e-32 142.1 101 67.3
HPP92_025806 Vanilla planifolia HOM05D006449 ORTHO05D007995 3.6e-32 141.7 91 70.3
Manes.08G011000 Manihot esculenta HOM05D006449 ORTHO05D007995 1.7e-29 132.9 97 67.0
SMO144G0185 Selaginella moellendorffii HOM05D006449 ORTHO05D007995 2.6e-27 125.6 89 62.9
Prupe.7G129700 Prunus persica HOM05D006449 ORTHO05D007995 8.0e-24 114.0 65 76.9
TAR633G1413 Trochodendron aralioides HOM05D002509 ORTHO05D002758 9.7e-22 107.1 54 88.9
Lj3A986G82 Lonicera japonica HOM05D006449 ORTHO05D007995 1.0e-18 97.1 120 49.2
PRCOL_00003735 Prasinoderma coloniale HOM05D006449 ORTHO05D007995 6.1e-16 87.8 110 41.8
CBR_g8310 Chara braunii HOM05D006449 ORTHO05D007995 1.4e-15 86.7 115 42.6
MCO09G543 Micromonas commoda HOM05D006449 ORTHO05D007995 5.2e-15 84.7 146 35.6
Cre17.g734628 Chlamydomonas reinhardtii HOM05D006449 ORTHO05D007995 3.4e-14 82.0 117 37.6
MSTRG.19181 Avicennia marina HOM05D006449 ORTHO05D007995 2.9e-10 68.9 33 90.9
HanXRQChr16g0526221 Helianthus annuus HOM05D006449 ORTHO05D007995 8.6e-10 67.4 30 93.3
Thhalv10009663m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 1.0e-07 60.5 31 83.9
unitig_75.g29315 Utricularia gibba HOM05D006449 ORTHO05D007995 7.5e-06 54.3 25 92.0


User provided reference genes

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