Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G140300 Glycine max HOM05D006467 ORTHO05D008012 1.5e-81 306.2 160 100.0
Glyma.10G053300 Glycine max HOM05D006467 ORTHO05D008012 3.1e-55 218.8 129 89.1
VMungo0720G0455 Vigna mungo HOM05D006467 ORTHO05D008012 1.2e-54 216.9 134 82.8
Phvul.007G220100 Phaseolus vulgaris HOM05D006467 ORTHO05D008012 2.7e-51 205.7 134 79.9
Lj5g0010745 Lotus japonicus HOM05D006467 ORTHO05D008012 8.6e-50 200.7 129 76.7
TPR.G21203 Trifolium pratense HOM05D006467 ORTHO05D008012 6.8e-47 191.0 129 72.9
Ca_11474_v3 Cicer arietinum L. HOM05D006467 ORTHO05D008012 9.9e-46 187.2 129 72.9
Medtr1g064490 Medicago truncatula HOM05D006467 ORTHO05D008012 8.4e-45 184.1 125 72.8
Lalb_Chr21g0314871 Lupinus albus HOM05D006467 ORTHO05D008012 6.2e-40 167.9 125 66.4
arahy.Tifrunner.gnm1.ann1.HNS49Q Arachis hypogaea HOM05D006467 ORTHO05D008012 5.3e-39 164.9 125 67.2
arahy.Tifrunner.gnm1.ann1.RH0WXQ Arachis hypogaea HOM05D006467 ORTHO05D008012 5.3e-39 164.9 125 67.2
arahy.Tifrunner.gnm1.ann1.VPUZ6C Arachis hypogaea HOM05D006467 ORTHO05D008012 5.3e-39 164.9 125 67.2
Thecc.05G060700 Theobroma cacao HOM05D006467 ORTHO05D008012 3.9e-34 148.7 128 57.8
Gohir.A04G074100 Gossypium hirsutum HOM05D006467 ORTHO05D008012 8.7e-34 147.5 126 59.5
Cfa017565 Carpinus fangiana HOM05D006467 ORTHO05D008012 1.1e-33 147.1 128 58.6
Gohir.D09G145300 Gossypium hirsutum HOM05D006467 ORTHO05D008012 4.3e-33 145.2 122 58.2
Dinv35529 Davidia involucrata HOM05D006467 ORTHO05D008012 9.6e-33 144.1 122 60.7
Oeu059967.1 Olea europaea HOM05D006467 ORTHO05D008012 1.3e-32 143.7 130 59.2
GSVIVG01025685001 Vitis vinifera HOM05D006467 ORTHO05D008012 1.3e-32 143.7 112 64.3
Actinidia19675 Actinidia chinensis HOM05D006467 ORTHO05D008012 2.8e-32 142.5 123 59.3
Potri.016G090000 Populus trichocarpa HOM05D006467 ORTHO05D008012 2.8e-32 142.5 129 59.7
Dinv35757 Davidia involucrata HOM05D006467 ORTHO05D008012 3.6e-32 142.1 123 61.0
RcHm_v2.0_Chr3g0469601 Rosa chinensis HOM05D006467 ORTHO05D008012 4.8e-32 141.7 128 53.1
Duzib128G1557 Durio zibethinus HOM05D006467 ORTHO05D008012 8.1e-32 141.0 129 55.0
Hma1.2p1_0614F.1_g189470 Hydrangea macrophylla HOM05D006467 ORTHO05D008012 1.1e-31 140.6 124 57.3
CSS0042234 Camellia sinensis var. sinensis HOM05D006467 ORTHO05D008012 3.1e-31 139.0 124 55.6
Gorai.009G417600 Gossypium raimondii HOM05D006467 ORTHO05D008012 3.1e-31 139.0 138 53.6
Migut.J00532 Erythranthe guttata HOM05D006467 ORTHO05D008012 4.0e-31 138.7 135 55.6
Lj2A112T40 Lonicera japonica HOM05D006467 ORTHO05D008012 4.0e-31 138.7 120 61.7
Nn2g13105 Nelumbo nucifera HOM05D006467 ORTHO05D008012 6.9e-31 137.9 134 53.7
MD04G1097300 Malus domestica HOM05D006467 ORTHO05D008012 9.0e-31 137.5 127 55.1
Gohir.A09G149400 Gossypium hirsutum HOM05D006467 ORTHO05D008012 1.2e-30 137.1 122 55.7
Ciclev10013106m.g Citrus clementina HOM05D006467 ORTHO05D008012 1.5e-30 136.7 125 55.2
TAR623G0732 Trochodendron aralioides HOM05D006467 ORTHO05D008012 2.0e-30 136.3 128 54.7
CANSAT80G0273 Cannabis sativa HOM05D006467 ORTHO05D008012 3.4e-30 135.6 133 53.4
MSTRG.19165 Avicennia marina HOM05D006467 ORTHO05D008012 4.5e-30 135.2 132 53.8
FAN09G2873 Fragaria x ananassa HOM05D006467 ORTHO05D008012 4.5e-30 135.2 125 52.8
Gorai.006G166500 Gossypium raimondii HOM05D006467 ORTHO05D008012 4.5e-30 135.2 137 51.8
COL.COLO4_27023 Corchorus olitorius HOM05D006467 ORTHO05D008012 9.9e-30 134.0 149 49.0
A03p20520 Brassica napus HOM05D006467 ORTHO05D008012 1.3e-29 133.7 128 55.5
BraA03t11294Z Brassica rapa HOM05D006467 ORTHO05D008012 1.3e-29 133.7 128 55.5
FAN14G3947 Fragaria x ananassa HOM05D006467 ORTHO05D008012 1.3e-29 133.7 125 52.0
Sabra16G0095600 Salix brachista HOM05D006467 ORTHO05D008012 1.3e-29 133.7 146 52.7
AL4G33560 Arabidopsis lyrata HOM05D006467 ORTHO05D008012 2.2e-29 132.9 128 55.5
Potri.006G127800 Populus trichocarpa HOM05D006467 ORTHO05D008012 2.2e-29 132.9 129 55.0
Sc02g0001830 Simmondsia chinensis HOM05D006467 ORTHO05D008012 2.2e-29 132.9 125 54.4
SGA_v2.0_scaffold40G15542 Striga asiatica HOM05D006467 ORTHO05D008012 2.2e-29 132.9 140 51.4
TAR369G0155 Trochodendron aralioides HOM05D006467 ORTHO05D008012 2.2e-29 132.9 124 55.6
QL07p044433 Quercus lobata HOM05D006467 ORTHO05D008012 2.9e-29 132.5 129 54.3
CiPaw.09G176000 Carya illinoinensis HOM05D006467 ORTHO05D008012 4.9e-29 131.7 128 52.3
FAN02G4276 Fragaria x ananassa HOM05D006467 ORTHO05D008012 4.9e-29 131.7 125 52.0
BcaC01g06644 Brassica carinata HOM05D006467 ORTHO05D008012 6.4e-29 131.3 128 53.9
Manes.08G007300 Manihot esculenta HOM05D006467 ORTHO05D008012 1.1e-28 130.6 123 56.1
Prupe.6G236600 Prunus persica HOM05D006467 ORTHO05D008012 1.1e-28 130.6 127 52.0
Carub.0004s1909 Capsella rubella HOM05D006467 ORTHO05D008012 1.4e-28 130.2 128 53.1
Atru.chr8.1867 Acer truncatum HOM05D006467 ORTHO05D008012 1.9e-28 129.8 125 54.4
C03p24120 Brassica napus HOM05D006467 ORTHO05D008012 1.9e-28 129.8 128 53.1
MD12G1118700 Malus domestica HOM05D006467 ORTHO05D008012 3.2e-28 129.0 122 53.3
AT2G37195 Arabidopsis thaliana HOM05D006467 ORTHO05D008012 4.2e-28 128.6 128 53.1
Thhalv10017389m.g Eutrema salsugineum HOM05D006467 ORTHO05D008012 5.4e-28 128.3 128 53.1
SalBow8G4982 Salvia bowleyana HOM05D006467 ORTHO05D008012 5.4e-28 128.3 132 53.8
Cpa.g.sc102.12 Carica papaya HOM05D006467 ORTHO05D008012 7.1e-28 127.9 123 51.2
vmacro20032 Vaccinium macrocarpon HOM05D006467 ORTHO05D008012 7.1e-28 127.9 162 46.9
BolC3t14804H Brassica oleracea HOM05D006467 ORTHO05D008012 9.3e-28 127.5 129 52.7
FvH4_6g15910 Fragaria vesca HOM05D006467 ORTHO05D008012 1.2e-27 127.1 132 49.2
THA.LOC104823447 Tarenaya hassleriana HOM05D006467 ORTHO05D008012 1.2e-27 127.1 129 52.7
Peaxi162Scf00123g00014 Petunia axillaris HOM05D006467 ORTHO05D008012 1.6e-27 126.7 148 50.0
Nn2g10804 Nelumbo nucifera HOM05D006467 ORTHO05D008012 2.7e-27 125.9 128 50.8
EL10Ac7g16554 Beta vulgaris HOM05D006467 ORTHO05D008012 3.5e-27 125.6 122 52.5
Nitab4.5_0000101g0130 Nicotiana tabacum HOM05D006467 ORTHO05D008012 7.9e-27 124.4 129 51.9
Sp4g19510 Schrenkiella parvula HOM05D006467 ORTHO05D008012 7.9e-27 124.4 128 50.0
Sopen09g002640 Solanum pennellii HOM05D006467 ORTHO05D008012 1.3e-26 123.6 124 53.2
TWI77G0724 Tripterygium wilfordii HOM05D006467 ORTHO05D008012 1.8e-26 123.2 126 51.6
Lsat_1_v5_gn_2_109060 Lactuca sativa HOM05D006467 ORTHO05D008012 2.3e-26 122.9 122 52.5
Ah.15g092380 Amaranthus hybridus HOM05D006467 ORTHO05D008012 3.0e-26 122.5 124 54.0
PGSC0003DMG400021546 Solanum tuberosum HOM05D006467 ORTHO05D008012 3.0e-26 122.5 124 53.2
CAN.G888.4 Capsicum annuum HOM05D006467 ORTHO05D008012 3.9e-26 122.1 124 50.8
Gohir.D04G113200 Gossypium hirsutum HOM05D006467 ORTHO05D008012 3.9e-26 122.1 103 58.3
Solyc09g007800.3 Solanum lycopersicum HOM05D006467 ORTHO05D008012 3.9e-26 122.1 124 52.4
CARHR131710 Cardamine hirsuta HOM05D006467 ORTHO05D008012 5.1e-26 121.7 128 52.3
Nitab4.5_0003923g0010 Nicotiana tabacum HOM05D006467 ORTHO05D008012 8.7e-26 120.9 129 51.9
ECA238G0062 Erigeron canadensis HOM05D006467 ORTHO05D008012 1.5e-25 120.2 123 52.0
AUR62033514 Chenopodium quinoa HOM05D006467 ORTHO05D008012 1.9e-25 119.8 125 51.2
MELO3C009340.2 Cucumis melo HOM05D006467 ORTHO05D008012 1.9e-25 119.8 129 48.1
PSO063G5019 Papaver somniferum HOM05D006467 ORTHO05D008012 1.9e-25 119.8 123 48.8
PSO339G1849 Papaver somniferum HOM05D006467 ORTHO05D008012 1.9e-25 119.8 123 48.8
PGR142G2369 Punica granatum HOM05D006467 ORTHO05D008012 1.9e-25 119.8 135 48.9
HanXRQChr07g0195271 Helianthus annuus HOM05D006467 ORTHO05D008012 2.5e-25 119.4 124 51.6
Cc06_g03930 Coffea canephora HOM05D006467 ORTHO05D008012 3.3e-25 119.0 115 52.2
CsaV3_3G035800 Cucumis sativus L. HOM05D006467 ORTHO05D008012 3.3e-25 119.0 129 48.1
Aqoxy1G01232 Aquilegia oxysepala HOM05D006467 ORTHO05D008012 5.6e-25 118.2 123 48.8
AUR62028561 Chenopodium quinoa HOM05D006467 ORTHO05D008012 1.3e-24 117.1 124 50.0
Psat6g070840 Pisum sativum HOM05D006467 ORTHO05D008012 3.7e-24 115.5 76 73.7
Aa31LG5G22520 Aethionema arabicum HOM05D006467 ORTHO05D008012 4.8e-24 115.2 128 49.2
MBI07_g19293_MAGBIO Magnolia biondii HOM05D006467 ORTHO05D008012 1.1e-23 114.0 129 47.3
ClCG10G020300 Citrullus lanatus HOM05D006467 ORTHO05D008012 2.4e-23 112.8 129 45.7
Sed0017827 Sechium edule HOM05D006467 ORTHO05D008012 5.3e-23 111.7 126 46.8
Dinv37285 Davidia involucrata HOM05D006467 ORTHO05D008012 7.6e-22 107.8 73 68.5
Sabra06G0100500 Salix brachista HOM05D006467 ORTHO05D008012 2.2e-21 106.3 168 42.3
Haze_20589 Corylus avellana HOM05D006467 ORTHO05D008012 5.5e-20 101.7 79 60.8
DCAR_009295 Daucus carota HOM05D006467 ORTHO05D008012 4.6e-19 98.6 81 55.6
Eucgr.K03249 Eucalyptus grandis HOM05D006467 ORTHO05D008012 2.3e-18 96.3 99 48.5
Hund20246 Selenicereus undatus HOM05D006467 ORTHO05D008012 9.6e-17 90.9 72 56.9
HPP92_022407 Vanilla planifolia HOM05D006467 ORTHO05D008012 2.8e-16 89.4 132 41.7
HPP92_027503 Vanilla planifolia HOM05D006467 ORTHO05D008012 6.2e-16 88.2 125 42.4
Zm00001eb191980 Zea mays HOM05D006467 ORTHO05D008012 4.0e-15 85.5 126 40.5
unitig_27.g25371 Utricularia gibba HOM05D006467 ORTHO05D008012 6.9e-15 84.7 105 41.9
Zm00001eb258270 Zea mays HOM05D006467 ORTHO05D008012 1.3e-13 80.5 122 40.2
FvH4_1g27957 Fragaria vesca HOM05D000871 ORTHO05D008012 1.7e-13 80.1 81 50.6
ATR0048G054 Amborella trichopoda HOM05D006467 ORTHO05D008012 3.2e-12 75.9 96 39.6
BcaC03g13318 Brassica carinata HOM05D006467 ORTHO05D008012 4.2e-12 75.5 98 44.9
BcaC03g13319 Brassica carinata HOM05D006467 ORTHO05D008012 4.2e-12 75.5 98 44.9
Os02g0805700 Oryza sativa ssp. japonica HOM05D006467 ORTHO05D008012 4.6e-11 72.0 118 38.1
FvH4_1g28030 Fragaria vesca HOM05D000871 ORTHO05D008012 1.0e-10 70.9 60 55.0
C07p17010 Brassica napus HOM05D006467 ORTHO05D008012 3.9e-10 68.9 92 44.6
C02p04540 Brassica napus HOM05D006467 ORTHO05D008012 6.7e-10 68.2 92 44.6
C06p12980 Brassica napus HOM05D006467 ORTHO05D008012 1.9e-09 66.6 84 46.4
BolC1t01590H Brassica oleracea HOM05D006467 ORTHO05D008012 4.3e-09 65.5 92 43.5
arahy.Tifrunner.gnm1.ann1.Q46SAL Arachis hypogaea HOM05D006467 ORTHO05D008012 1.1e-07 60.8 45 62.2
BcaC08g43911 Brassica carinata HOM05D006467 ORTHO05D008012 1.4e-07 60.5 73 45.2
arahy.Tifrunner.gnm1.ann1.LA4XPU Arachis hypogaea HOM05D006467 ORTHO05D008012 1.2e-06 57.4 33 78.8
FAN26G0965 Fragaria x ananassa HOM05D000871 ORTHO05D011596 5.9e-06 55.1 34 67.6
PSO063G7135 Papaver somniferum HOM05D000530 ORTHO05D000621 1.0e-05 54.3 34 64.7


User provided reference genes

Program Settings