Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 2.8e-123 445.3 219 100.0
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 2.7e-110 402.1 213 91.5
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 1.7e-101 372.9 217 82.9
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 4.1e-95 351.7 218 76.6
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 5.6e-92 341.3 263 65.4
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 2.4e-82 309.3 219 73.5
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 6.4e-80 301.2 227 65.6
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 8.4e-80 300.8 221 65.2
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 1.2e-78 297.0 215 66.0
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 1.6e-78 296.6 213 66.2
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 1.6e-78 296.6 222 62.2
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 2.7e-78 295.8 221 63.8
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 1.3e-77 293.5 220 65.5
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 2.3e-77 292.7 227 64.3
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 3.9e-77 292.0 245 63.7
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 1.5e-76 290.0 221 61.5
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 7.4e-76 287.7 229 63.3
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 3.6e-75 285.4 224 60.7
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 8.1e-75 284.3 218 60.1
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 2.4e-74 282.7 218 61.0
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 2.4e-74 282.7 218 61.0
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 2.6e-73 279.3 247 54.7
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 1.3e-72 276.9 188 66.5
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 2.9e-72 275.8 217 61.8
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 6.4e-72 274.6 212 64.2
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 6.4e-72 274.6 219 59.8
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 1.4e-71 273.5 219 59.8
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 9.3e-71 270.8 217 60.8
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 1.2e-70 270.4 189 65.6
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 1.6e-70 270.0 215 58.1
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 6.0e-70 268.1 190 66.8
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 1.8e-69 266.5 215 60.5
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 3.0e-69 265.8 216 60.6
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 1.1e-68 263.8 215 59.5
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 1.5e-68 263.5 221 59.7
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 2.5e-68 262.7 219 56.6
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 5.6e-68 261.5 219 58.0
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 7.4e-68 261.2 216 59.3
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 7.4e-68 261.2 219 60.3
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 1.6e-67 260.0 222 55.9
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 2.8e-67 259.2 220 58.2
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 2.8e-67 259.2 256 51.2
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 6.2e-67 258.1 215 56.7
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 1.8e-66 256.5 217 56.7
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 2.4e-66 256.1 217 56.7
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 3.1e-66 255.8 218 57.8
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 3.1e-66 255.8 214 55.6
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 3.1e-66 255.8 216 56.9
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 4.0e-66 255.4 215 55.3
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 9.0e-66 254.2 190 61.1
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 9.0e-66 254.2 214 57.9
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 9.0e-66 254.2 221 57.5
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 4.5e-65 251.9 207 58.5
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 4.5e-65 251.9 191 62.3
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 7.6e-65 251.1 212 55.7
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 7.6e-65 251.1 221 57.5
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 1.7e-64 250.0 209 56.0
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 2.2e-64 249.6 214 55.1
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 2.2e-64 249.6 217 58.1
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 2.2e-64 249.6 196 61.7
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 6.5e-64 248.1 214 56.1
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 8.4e-64 247.7 214 56.1
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 1.4e-63 246.9 218 55.0
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 3.2e-63 245.7 227 58.6
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 4.2e-63 245.4 194 60.3
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 4.2e-63 245.4 191 58.6
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 7.1e-63 244.6 215 53.5
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 2.1e-62 243.0 204 55.9
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 4.6e-62 241.9 236 53.4
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 6.0e-62 241.5 215 52.6
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 7.9e-62 241.1 223 54.3
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 1.0e-61 240.7 213 53.5
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 3.9e-61 238.8 211 52.6
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 1.1e-60 237.3 220 54.1
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.5e-60 236.9 218 53.7
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 2.5e-60 236.1 212 53.3
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 4.3e-60 235.3 217 53.9
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 1.3e-59 233.8 208 54.8
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 2.8e-59 232.6 214 53.3
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 4.8e-59 231.9 207 55.6
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 6.3e-59 231.5 209 54.5
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 8.2e-59 231.1 209 54.1
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 1.1e-58 230.7 222 52.7
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 1.4e-58 230.3 222 52.7
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 2.4e-58 229.6 204 52.9
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 3.1e-58 229.2 250 48.4
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 5.3e-58 228.4 209 53.1
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 5.3e-58 228.4 220 49.5
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 1.2e-57 227.3 223 51.6
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 1.5e-57 226.9 207 53.1
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 2.0e-57 226.5 209 53.6
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 2.6e-57 226.1 228 50.9
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 3.4e-57 225.7 215 53.0
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 5.9e-57 224.9 222 52.3
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 5.9e-57 224.9 190 59.5
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 1.0e-56 224.2 210 52.9
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 1.3e-56 223.8 209 53.6
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 1.7e-56 223.4 196 53.6
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 1.7e-56 223.4 250 47.6
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 2.9e-56 222.6 209 53.6
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 2.9e-56 222.6 178 58.4
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 2.9e-56 222.6 213 49.8
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 6.5e-56 221.5 221 49.3
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.4e-55 220.3 228 50.4
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 4.2e-55 218.8 209 53.1
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 4.2e-55 218.8 209 53.6
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 5.5e-55 218.4 219 52.1
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 9.3e-55 217.6 220 52.3
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 9.3e-55 217.6 220 52.3
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 9.3e-55 217.6 226 50.4
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 3.6e-54 215.7 220 51.8
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 4.6e-54 215.3 209 52.6
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 4.6e-54 215.3 205 52.2
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 6.1e-54 214.9 209 52.6
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 6.1e-54 214.9 229 50.2
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 1.3e-53 213.8 151 64.9
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 5.1e-53 211.8 222 48.6
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 5.1e-53 211.8 204 51.5
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 8.7e-53 211.1 223 48.9
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.5e-52 210.3 208 49.0
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 2.5e-52 209.5 203 52.2
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 5.7e-52 208.4 220 50.9
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 5.7e-52 208.4 220 49.5
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 1.6e-51 206.8 189 52.4
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 3.1e-50 202.6 228 45.6
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 7.7e-49 198.0 257 41.6
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 5.0e-48 195.3 182 52.7
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 1.1e-47 194.1 210 49.0
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 1.2e-46 190.7 210 48.1
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 2.7e-46 189.5 205 43.9
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 6.1e-46 188.3 209 47.4
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 6.1e-46 188.3 139 61.2
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 7.9e-46 188.0 218 42.7
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 1.4e-45 187.2 217 46.1
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 5.1e-45 185.3 203 45.3
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 1.5e-44 183.7 225 42.7
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 2.6e-44 183.0 216 44.9
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 7.4e-44 181.4 216 44.4
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 3.7e-43 179.1 195 46.2
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 4.8e-43 178.7 220 41.8
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 4.8e-43 178.7 184 46.2
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 8.2e-43 177.9 138 58.7
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 2.0e-41 173.3 210 46.2
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 1.0e-40 171.0 200 46.0
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 1.7e-40 170.2 217 41.9
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 1.7e-40 170.2 210 45.7
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 2.2e-40 169.9 202 46.5
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 2.9e-40 169.5 224 43.3
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 2.9e-40 169.5 224 43.3
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 3.2e-39 166.0 192 46.9
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 1.5e-36 157.1 187 43.3
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 2.0e-36 156.8 141 52.5
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.3e-35 154.1 139 51.8
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 1.4e-34 150.6 226 39.4
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 2.2e-32 143.3 164 46.3
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 2.7e-30 136.3 163 44.2
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 3.7e-27 125.9 181 38.1
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 8.2e-27 124.8 213 34.3
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 3.1e-26 122.9 212 34.9
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 1.0e-24 117.9 118 50.0
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 8.5e-24 114.8 144 39.6
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 7.2e-23 111.7 144 38.2
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 4.4e-20 102.4 106 48.1
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.1e-18 97.8 159 35.2
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 2.5e-15 86.7 65 58.5
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 6.1e-14 82.0 73 58.9
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 3.0e-13 79.7 67 56.7
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 2.0e-12 77.0 76 50.0
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 9.8e-12 74.7 64 53.1
Zm00001eb341480 Zea mays HOM05D014943 ORTHO05D019389 1.6e-09 67.4 68 45.6
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 3.5e-09 66.2 60 50.0
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 3.5e-09 66.2 68 44.1
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 1.1e-07 61.2 106 34.0
HPP92_026989 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.9e-07 60.5 56 48.2
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 1.6e-06 57.4 106 37.7


User provided reference genes

Program Settings