Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G131600 Glycine max HOM05D006895 ORTHO05D008605 1.2e-114 418.3 757 100.0
Glyma.10G043900 Glycine max HOM05D006895 ORTHO05D008605 8.7e-84 315.8 333 87.7
VMungo0720G1504 Vigna mungo HOM05D006895 ORTHO05D008605 8.7e-84 315.8 757 92.5
Phvul.007G157700 Phaseolus vulgaris HOM05D006895 ORTHO05D008605 3.2e-78 297.4 761 91.2
VMungo0720G1993 Vigna mungo HOM05D000048 ORTHO05D000207 1.1e-46 192.6 144 74.3
Lalb_Chr02g0153051 Lupinus albus HOM05D006895 ORTHO05D008605 2.5e-46 191.4 194 56.7
Lj5g0004082 Lotus japonicus HOM05D006895 ORTHO05D008605 1.1e-41 176.0 197 52.8
CANSAT80G0660 Cannabis sativa HOM05D006895 ORTHO05D008605 4.2e-38 164.1 173 56.1
MELO3C003111.2 Cucumis melo HOM05D006895 ORTHO05D008605 5.9e-32 143.7 166 50.0
Nn8g40743 Nelumbo nucifera HOM05D006895 ORTHO05D008605 2.3e-31 141.7 154 49.4
Sed0013405 Sechium edule HOM05D006895 ORTHO05D008605 2.9e-31 141.4 203 43.8
ClCG04G008380 Citrullus lanatus HOM05D006895 ORTHO05D008605 3.8e-31 141.0 191 44.0
Eucgr.K03156 Eucalyptus grandis HOM05D006895 ORTHO05D008605 6.6e-31 140.2 192 44.3
Prupe.6G250800 Prunus persica HOM05D006895 ORTHO05D008605 1.1e-30 139.4 153 47.7
MD12G1138900 Malus domestica HOM05D006895 ORTHO05D008605 1.5e-30 139.0 180 46.7
CiPaw.10G143400 Carya illinoinensis HOM05D006895 ORTHO05D008605 3.3e-30 137.9 207 43.5
Ciclev10013605m.g Citrus clementina HOM05D006895 ORTHO05D008605 3.3e-30 137.9 195 45.1
CSS0020348 Camellia sinensis var. sinensis HOM05D006895 ORTHO05D008605 5.5e-30 137.1 154 50.0
QL07p047413 Quercus lobata HOM05D006895 ORTHO05D008605 9.5e-30 136.3 190 43.7
QL05p010620 Quercus lobata HOM05D006895 ORTHO05D008605 1.2e-29 136.0 192 42.2
THA.LOC104806571 Tarenaya hassleriana HOM05D006895 ORTHO05D008605 1.2e-29 136.0 161 50.9
Cfa017422 Carpinus fangiana HOM05D006895 ORTHO05D008605 2.1e-29 135.2 209 42.6
Haze_20748 Corylus avellana HOM05D006895 ORTHO05D008605 2.8e-29 134.8 187 43.9
Duzib128G0849 Durio zibethinus HOM05D006895 ORTHO05D008605 2.8e-29 134.8 172 47.7
Medtr1g068960 Medicago truncatula HOM05D006895 ORTHO05D008605 2.8e-29 134.8 106 63.2
TPR.G30959 Trifolium pratense HOM05D006895 ORTHO05D008605 2.8e-29 134.8 107 83.2
CsaV3_4G024770 Cucumis sativus L. HOM05D006895 ORTHO05D008605 3.6e-29 134.4 166 47.0
PGR004G1128 Punica granatum HOM05D006895 ORTHO05D008605 3.6e-29 134.4 195 44.1
CSS0025676 Camellia sinensis var. sinensis HOM05D006895 ORTHO05D008605 4.7e-29 134.0 154 49.4
Gohir.D04G119700 Gossypium hirsutum HOM05D006895 ORTHO05D008605 4.7e-29 134.0 169 47.9
Gorai.012G101800 Gossypium raimondii HOM05D006895 ORTHO05D008605 4.7e-29 134.0 169 47.9
Psat6g065920 Pisum sativum HOM05D006895 ORTHO05D008605 6.1e-29 133.7 107 63.6
Ca_09611_v3 Cicer arietinum L. HOM05D006895 ORTHO05D008605 8.0e-29 133.3 108 65.7
Thecc.05G043800 Theobroma cacao HOM05D006895 ORTHO05D008605 8.0e-29 133.3 173 48.6
TAR636G1679 Trochodendron aralioides HOM05D006895 ORTHO05D008605 4.0e-28 131.0 159 45.9
Atru.BG.222.p Acer truncatum HOM05D006895 ORTHO05D008605 8.9e-28 129.8 131 51.9
Psat6g065880 Pisum sativum HOM05D006895 ORTHO05D008605 3.4e-27 127.9 200 43.0
FvH4_6g14250 Fragaria vesca HOM05D006895 ORTHO05D008605 4.4e-27 127.5 170 47.6
FAN05G0539 Fragaria x ananassa HOM05D006895 ORTHO05D008605 4.4e-27 127.5 170 47.6
FAN14G2414 Fragaria x ananassa HOM05D006895 ORTHO05D008605 4.4e-27 127.5 170 47.6
TAR633G1621 Trochodendron aralioides HOM05D006895 ORTHO05D008605 4.4e-27 127.5 184 41.8
Dinv35630 Davidia involucrata HOM05D006895 ORTHO05D008605 5.7e-27 127.1 191 41.9
Lj2C99T13 Lonicera japonica HOM05D006895 ORTHO05D008605 7.5e-27 126.7 192 42.2
TWI77G0080 Tripterygium wilfordii HOM05D006895 ORTHO05D008605 9.8e-27 126.3 172 45.3
Rhsim04G0155200 Rhododendron simsii HOM05D006895 ORTHO05D008605 1.7e-26 125.6 203 40.4
FAN09G2819 Fragaria x ananassa HOM05D006895 ORTHO05D008605 2.8e-26 124.8 170 47.1
Manes.08G078400 Manihot esculenta HOM05D006895 ORTHO05D008605 4.9e-26 124.0 178 40.4
CDE04G3188 Ceratophyllum demersum HOM05D006895 ORTHO05D008605 6.3e-26 123.6 164 41.5
Cc06_g02910 Coffea canephora HOM05D006895 ORTHO05D008605 1.8e-25 122.1 184 42.9
Nitab4.5_0003267g0080 Nicotiana tabacum HOM05D006895 ORTHO05D008605 3.2e-25 121.3 155 43.9
Migut.J00352 Erythranthe guttata HOM05D006895 ORTHO05D008605 9.2e-25 119.8 155 43.9
AT3G53700 Arabidopsis thaliana HOM05D006895 ORTHO05D008605 1.2e-24 119.4 196 44.4
SalBow3G1315 Salvia bowleyana HOM05D006895 ORTHO05D008605 1.2e-24 119.4 197 40.6
Nitab4.5_0002077g0070 Nicotiana tabacum HOM05D006895 ORTHO05D008605 2.0e-24 118.6 187 40.1
EL10Ac8g18760 Beta vulgaris HOM05D006895 ORTHO05D008605 2.7e-24 118.2 204 39.7
SGA_v2.0_scaffold126G33815 Striga asiatica HOM05D006895 ORTHO05D008605 5.9e-24 117.1 157 43.9
BraA04t16297Z Brassica rapa HOM05D006895 ORTHO05D008605 1.0e-23 116.3 194 43.3
RcHm_v2.0_Chr3g0467211 Rosa chinensis HOM05D006895 ORTHO05D008605 1.0e-23 116.3 105 55.2
A04p05930 Brassica napus HOM05D006895 ORTHO05D008605 1.3e-23 115.9 192 43.8
BolC4t25457H Brassica oleracea HOM05D006895 ORTHO05D008605 1.7e-23 115.5 105 51.4
Ah.09g224140 Amaranthus hybridus HOM05D006895 ORTHO05D008605 2.3e-23 115.2 192 39.6
Carub.0005s2028 Capsella rubella HOM05D006895 ORTHO05D008605 2.3e-23 115.2 193 46.1
Thhalv10010142m.g Eutrema salsugineum HOM05D006895 ORTHO05D008605 2.3e-23 115.2 191 42.9
MBI14_g24311_MAGBIO Magnolia biondii HOM05D006895 ORTHO05D008605 2.3e-23 115.2 154 44.2
Atru.chr8.1949 Acer truncatum HOM05D006895 ORTHO05D008605 2.9e-23 114.8 105 52.4
Oeu049215.1 Olea europaea HOM05D006895 ORTHO05D008605 2.9e-23 114.8 168 43.5
BcaB02g08515 Brassica carinata HOM05D006895 ORTHO05D008605 3.9e-23 114.4 105 50.5
MSTRG.5682 Avicennia marina HOM05D006895 ORTHO05D008605 5.0e-23 114.0 183 41.0
DCAR_009247 Daucus carota HOM05D006895 ORTHO05D008605 6.6e-23 113.6 188 39.9
Sopen09g005190 Solanum pennellii HOM05D006895 ORTHO05D008605 6.6e-23 113.6 175 41.1
CARHR163610 Cardamine hirsuta HOM05D006895 ORTHO05D008605 8.6e-23 113.2 194 42.8
Gohir.A04G081000 Gossypium hirsutum HOM05D006895 ORTHO05D008605 1.1e-22 112.8 105 75.2
PGSC0003DMG400008927 Solanum tuberosum HOM05D006895 ORTHO05D008605 1.1e-22 112.8 167 41.9
PSO339G3203 Papaver somniferum HOM05D006895 ORTHO05D008605 1.5e-22 112.5 178 37.6
AL5G34670 Arabidopsis lyrata HOM05D006895 ORTHO05D008605 1.9e-22 112.1 195 43.6
Solyc09g010450.1 Solanum lycopersicum HOM05D006895 ORTHO05D008605 1.9e-22 112.1 167 41.3
Aa31LG10G9340 Aethionema arabicum HOM05D006895 ORTHO05D008605 2.5e-22 111.7 105 59.0
Potri.004G013300 Populus trichocarpa HOM05D006895 ORTHO05D008605 2.5e-22 111.7 105 54.3
Sp5g08680 Schrenkiella parvula HOM05D006895 ORTHO05D008605 5.6e-22 110.5 190 43.7
Rhsim04G0155500 Rhododendron simsii HOM05D006895 ORTHO05D008605 9.5e-22 109.8 166 40.4
Cpa.g.sc312.1 Carica papaya HOM05D006895 ORTHO05D008605 1.2e-21 109.4 105 73.3
CAN.G97.15 Capsicum annuum HOM05D006895 ORTHO05D008605 1.6e-21 109.0 200 38.5
Aqoxy3G03023 Aquilegia oxysepala HOM05D006895 ORTHO05D008605 2.8e-21 108.2 189 38.1
SGA_v2.0_scaffold126G33817 Striga asiatica HOM05D006895 ORTHO05D008605 2.8e-21 108.2 157 41.4
Actinidia13132 Actinidia chinensis HOM05D006895 ORTHO05D008605 3.6e-21 107.8 105 49.5
BcaC02g09140 Brassica carinata HOM05D006895 ORTHO05D008605 4.7e-21 107.5 159 44.0
C04p38850 Brassica napus HOM05D006895 ORTHO05D008605 4.7e-21 107.5 159 44.0
PSO648G0005 Papaver somniferum HOM05D006895 ORTHO05D008605 4.7e-21 107.5 154 39.6
Actinidia05301 Actinidia chinensis HOM05D006895 ORTHO05D008605 6.1e-21 107.1 105 60.0
Rhsim04G0155400 Rhododendron simsii HOM05D006895 ORTHO05D008605 1.0e-20 106.3 199 38.2
Rhsim04G0155800 Rhododendron simsii HOM05D006895 ORTHO05D008605 1.4e-20 105.9 188 36.2
AUR62020014 Chenopodium quinoa HOM05D006895 ORTHO05D008605 4.0e-20 104.4 105 47.6
HanXRQChr11g0349291 Helianthus annuus HOM05D006895 ORTHO05D008605 8.9e-20 103.2 152 40.1
Lsat_1_v5_gn_1_55640 Lactuca sativa HOM05D006895 ORTHO05D008605 8.9e-20 103.2 138 39.9
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 1.5e-19 102.4 92 58.7
vmacro08665 Vaccinium macrocarpon HOM05D006895 ORTHO05D008605 3.4e-19 101.3 151 39.1
Rhsim04G0155700 Rhododendron simsii HOM05D006895 ORTHO05D008605 9.8e-19 99.8 198 36.9
Sc01g0004190 Simmondsia chinensis HOM05D006895 ORTHO05D008605 1.7e-18 99.0 190 36.3
ECA248G3443 Erigeron canadensis HOM05D006895 ORTHO05D008605 3.7e-18 97.8 138 39.1
HanXRQChr01g0026741 Helianthus annuus HOM05D006895 ORTHO05D008605 8.3e-18 96.7 138 36.2
MD04G1122700 Malus domestica HOM05D006895 ORTHO05D008605 1.6e-16 92.4 112 45.5
Migut.O00943 Erythranthe guttata HOM05D006895 ORTHO05D008605 2.3e-15 88.6 95 45.3
ATR0559G329 Amborella trichopoda HOM05D006895 ORTHO05D008605 7.3e-14 83.6 150 36.7
Nn3g21911 Nelumbo nucifera HOM05D006895 ORTHO05D008605 9.5e-14 83.2 127 39.4
Zm00001eb043060 Zea mays HOM05D006895 ORTHO05D008605 1.2e-13 82.8 97 42.3
Sabra04G0006200 Salix brachista HOM05D006895 ORTHO05D008605 1.4e-12 79.3 119 40.3
SEGI_37919 Sequoiadendron giganteum HOM05D006895 ORTHO05D008605 4.0e-12 77.8 164 32.3
Os03g0597200 Oryza sativa ssp. japonica HOM05D006895 ORTHO05D008605 6.8e-12 77.0 97 41.2
SEGI_32765 Sequoiadendron giganteum HOM05D002737 ORTHO05D009499 6.8e-12 77.0 138 32.6
GSVIVG01025524001 Vitis vinifera HOM05D006895 ORTHO05D008605 2.9e-10 71.6 56 60.7
Rhsim04G0155600 Rhododendron simsii HOM05D006895 ORTHO05D008605 4.9e-10 70.9 100 38.0
SalBow5G3690 Salvia bowleyana HOM05D007172 ORTHO05D009267 4.9e-10 70.9 135 33.3
ATR0929G004 Amborella trichopoda HOM05D002986 ORTHO05D003966 1.1e-09 69.7 135 27.4
HanXRQChr10g0287011 Helianthus annuus HOM05D007172 ORTHO05D009267 2.1e-08 65.5 122 32.8
Manes.08G087900 Manihot esculenta HOM05D007172 ORTHO05D009267 2.1e-08 65.5 133 31.6
FAN02G2761 Fragaria x ananassa HOM05D007172 ORTHO05D009267 3.5e-08 64.7 133 30.1
FAN09G1061 Fragaria x ananassa HOM05D007172 ORTHO05D009267 3.5e-08 64.7 133 30.1
Lj2C80T7 Lonicera japonica HOM05D007172 ORTHO05D009267 6.0e-08 63.9 127 30.7
Sabra16G0107800 Salix brachista HOM05D007172 ORTHO05D009267 6.0e-08 63.9 133 33.8
FvH4_6g11981 Fragaria vesca HOM05D007172 ORTHO05D009267 1.0e-07 63.2 133 29.3
FAN14G1264 Fragaria x ananassa HOM05D007172 ORTHO05D009267 1.0e-07 63.2 133 29.3
MSTRG.5594 Avicennia marina HOM05D007172 ORTHO05D009267 1.3e-07 62.8 138 30.4
Gohir.D01G215100 Gossypium hirsutum HOM05D007172 ORTHO05D009267 1.3e-07 62.8 126 30.2
Potri.016G111600 Populus trichocarpa HOM05D007172 ORTHO05D009267 1.3e-07 62.8 133 33.1
CSS0033736 Camellia sinensis var. sinensis HOM05D007172 ORTHO05D009267 1.7e-07 62.4 132 30.3
CSS0036168 Camellia sinensis var. sinensis HOM05D007172 ORTHO05D009267 1.7e-07 62.4 132 30.3
FAN14G1160 Fragaria x ananassa HOM05D007172 ORTHO05D009267 1.7e-07 62.4 133 28.6
SEGI_16355 Sequoiadendron giganteum HOM05D004271 ORTHO05D006011 1.7e-07 62.4 136 27.2
Dinv14529 Davidia involucrata HOM05D007172 ORTHO05D009267 2.3e-07 62.0 127 30.7
Dinv35510 Davidia involucrata HOM05D007172 ORTHO05D009267 2.3e-07 62.0 127 30.7
Gohir.A01G225400 Gossypium hirsutum HOM05D007172 ORTHO05D009267 2.3e-07 62.0 126 30.2
Gorai.002G261200 Gossypium raimondii HOM05D007172 ORTHO05D009267 2.3e-07 62.0 126 30.2
Solyc09g014210.3 Solanum lycopersicum HOM05D007172 ORTHO05D009267 2.3e-07 62.0 132 30.3
Ah.09g234090 Amaranthus hybridus HOM05D002737 ORTHO05D009499 3.9e-07 61.2 134 31.3
PGR042G3094 Punica granatum HOM05D007660 ORTHO05D009442 5.1e-07 60.8 136 28.7
Sopen09g007080 Solanum pennellii HOM05D007172 ORTHO05D009267 5.1e-07 60.8 132 30.3
PGSC0003DMG400020346 Solanum tuberosum HOM05D007172 ORTHO05D009267 5.1e-07 60.8 132 30.3
COL.COLO4_14594 Corchorus olitorius HOM05D007172 ORTHO05D009267 6.6e-07 60.5 132 28.0
Nn2g11372 Nelumbo nucifera HOM05D007172 ORTHO05D009267 8.6e-07 60.1 124 29.8
Haze_15702 Corylus avellana HOM05D002986 ORTHO05D003966 1.1e-06 59.7 136 29.4
CANSAT35G0540 Cannabis sativa HOM05D007172 ORTHO05D009267 1.5e-06 59.3 139 28.8
HPP92_009571 Vanilla planifolia HOM05D002737 ORTHO05D009499 1.5e-06 59.3 121 33.1
AUR62025815 Chenopodium quinoa HOM05D007172 ORTHO05D009267 1.9e-06 58.9 136 27.2
Aqoxy1G00702 Aquilegia oxysepala HOM05D007172 ORTHO05D009267 2.5e-06 58.5 134 30.6
Lsat_1_v5_gn_9_36040 Lactuca sativa HOM05D007172 ORTHO05D009267 2.5e-06 58.5 128 29.7
ATR0605G069 Amborella trichopoda HOM05D000424 ORTHO05D000355 3.3e-06 58.2 128 32.0
CiPaw.09G206300 Carya illinoinensis HOM05D007172 ORTHO05D009267 3.3e-06 58.2 132 28.0
AUR62042945 Chenopodium quinoa HOM05D007172 ORTHO05D009267 4.3e-06 57.8 136 27.9
PGR004G2241 Punica granatum HOM05D007172 ORTHO05D009267 4.3e-06 57.8 139 31.7
RcHm_v2.0_Chr3g0463821 Rosa chinensis HOM05D007172 ORTHO05D009267 4.3e-06 57.8 126 27.8
Thecc.05G021800 Theobroma cacao HOM05D007172 ORTHO05D009267 4.3e-06 57.8 132 27.3
Cfa003765 Carpinus fangiana HOM05D002986 ORTHO05D003966 5.6e-06 57.4 136 27.9
MBI04_g11919_MAGBIO Magnolia biondii HOM05D002986 ORTHO05D003966 9.5e-06 56.6 156 26.3


User provided reference genes

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