Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 0.0e+00 1101.7 548 100.0
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 9.7e-311 1069.3 535 99.3
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 2.6e-303 1044.6 535 97.0
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 3.5e-292 1007.7 548 91.4
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 2.8e-281 971.5 549 87.6
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 4.7e-281 970.7 539 90.9
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 4.9e-278 960.7 550 87.1
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 4.9e-278 960.7 550 87.3
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 9.5e-274 946.4 550 85.8
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 9.9e-271 936.4 549 85.1
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 1.6e-268 929.1 551 84.8
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 3.4e-263 911.4 551 83.5
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 6.4e-262 907.1 550 82.9
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 5.4e-261 904.0 551 82.6
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 9.2e-261 903.3 513 88.5
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 1.5e-258 896.0 550 82.2
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 9.6e-258 893.3 546 82.8
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 7.6e-255 883.6 549 79.4
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 6.4e-254 880.6 536 81.0
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 7.1e-253 877.1 552 81.2
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 4.8e-249 864.4 547 79.3
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.8e-248 862.4 577 76.9
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 9.0e-248 860.1 551 79.1
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 1.2e-247 859.8 514 82.3
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 4.5e-247 857.8 547 78.4
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 5.8e-247 857.4 542 80.1
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 4.9e-246 854.4 552 78.1
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 2.7e-244 848.6 556 77.3
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 1.0e-243 846.7 513 81.7
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 2.3e-243 845.5 547 79.7
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 2.3e-243 845.5 546 78.6
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 1.1e-242 843.2 556 77.2
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 1.1e-242 843.2 549 77.4
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 7.4e-242 840.5 549 78.3
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 1.6e-241 839.3 556 76.8
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 6.2e-241 837.4 546 77.8
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 2.4e-240 835.5 550 77.3
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 3.1e-240 835.1 511 80.4
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 4.0e-240 834.7 511 80.2
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 4.0e-240 834.7 562 75.4
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 5.3e-240 834.3 511 80.4
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 6.9e-240 833.9 562 75.3
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 3.4e-239 831.6 511 80.0
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 4.5e-239 831.2 511 80.0
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 1.3e-238 829.7 546 77.5
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 6.4e-238 827.4 516 79.5
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 2.5e-237 825.5 543 77.3
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 7.9e-236 820.5 556 74.8
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 1.8e-235 819.3 489 81.6
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 3.0e-235 818.5 538 76.2
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 3.9e-235 818.1 549 75.6
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 1.5e-234 816.2 561 73.4
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 2.5e-234 815.5 546 76.0
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 2.5e-234 815.5 546 76.0
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 5.7e-234 814.3 555 75.9
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 9.6e-234 813.5 550 76.0
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 9.6e-234 813.5 536 75.7
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 1.3e-233 813.1 551 76.0
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 1.3e-233 813.1 550 76.0
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 1.4e-232 809.7 516 77.7
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 4.0e-232 808.1 524 76.5
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 4.0e-232 808.1 547 74.4
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 5.3e-232 807.7 553 75.2
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 3.4e-231 805.1 489 79.8
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 1.7e-230 802.7 535 75.3
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 1.7e-230 802.7 556 74.5
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 6.5e-230 800.8 546 74.5
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 3.2e-229 798.5 516 76.9
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 7.9e-228 793.9 559 70.3
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 6.7e-227 790.8 506 76.9
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 8.7e-227 790.4 531 74.8
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 4.3e-226 788.1 530 73.6
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 5.7e-226 787.7 564 73.2
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 8.2e-225 783.9 545 71.9
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 3.4e-223 778.5 552 70.5
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 3.4e-223 778.5 549 71.9
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 3.2e-221 771.9 549 71.8
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 5.5e-221 771.2 524 73.1
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 5.5e-221 771.2 531 72.5
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 7.2e-221 770.8 544 73.0
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 1.6e-220 769.6 541 72.6
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 2.1e-220 769.2 513 75.8
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 2.7e-220 768.8 523 72.7
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 3.9e-219 765.0 548 71.5
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 3.9e-219 765.0 513 75.6
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 6.7e-219 764.2 524 72.7
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 3.7e-217 758.4 535 72.5
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 4.8e-217 758.1 518 73.6
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 1.8e-216 756.1 536 72.4
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 3.1e-216 755.4 544 71.5
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 3.1e-216 755.4 469 77.4
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 1.5e-215 753.1 546 70.5
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 5.9e-215 751.1 516 75.2
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 5.9e-215 751.1 544 70.8
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 2.2e-214 749.2 530 71.5
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 8.5e-214 747.3 543 70.2
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 8.5e-214 747.3 543 69.8
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 1.1e-213 746.9 546 70.1
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 7.2e-213 744.2 543 69.8
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 1.6e-212 743.0 548 67.3
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 1.6e-212 743.0 523 70.9
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 3.6e-212 741.9 529 69.8
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 6.1e-212 741.1 543 69.4
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 2.3e-211 739.2 551 68.1
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 8.8e-211 737.3 634 61.7
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 1.1e-210 736.9 509 75.0
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 1.5e-210 736.5 548 67.0
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 4.8e-209 731.5 549 70.3
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 5.3e-208 728.0 524 69.5
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 9.1e-208 727.2 489 72.8
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 2.6e-207 725.7 544 69.1
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 3.5e-207 725.3 463 75.8
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 2.9e-206 722.2 539 67.7
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 8.5e-206 720.7 543 68.0
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 6.3e-201 704.5 543 68.1
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 2.1e-196 689.5 404 81.9
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.4e-195 686.8 550 67.5
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 1.2e-194 683.7 545 67.9
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 1.8e-192 676.4 506 68.6
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 5.9e-191 671.4 537 64.4
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 3.8e-190 668.7 554 65.3
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 6.3e-185 651.4 402 77.1
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 1.0e-182 644.0 552 60.5
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 1.4e-179 633.6 556 61.0
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 3.9e-174 615.5 429 76.5
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 8.6e-174 614.4 487 63.9
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 2.9e-169 599.4 530 59.4
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 5.4e-168 595.1 354 84.2
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 2.2e-161 573.2 503 60.2
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 5.1e-158 562.0 428 68.0
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 2.1e-156 556.6 552 55.8
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 2.3e-155 553.1 539 55.3
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 3.2e-152 542.7 466 60.9
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 2.1e-148 530.0 375 74.1
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 2.2e-137 493.4 560 49.3
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 8.4e-137 491.5 376 67.6
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 3.5e-135 486.1 583 47.0
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 3.2e-128 463.0 545 48.3
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 7.9e-127 458.4 389 65.0
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 1.4e-102 377.9 306 57.2
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 3.0e-102 376.7 504 44.0
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 1.5e-101 374.4 626 38.5
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 1.2e-87 328.2 321 58.6
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 5.7e-69 266.2 165 81.2
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 2.5e-64 250.8 240 57.9
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 3.9e-57 226.9 460 31.7
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 1.9e-56 224.6 262 53.1
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 9.2e-51 205.7 169 63.3
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 5.0e-49 199.9 98 92.9
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 8.6e-49 199.1 422 32.9
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 4.0e-46 190.3 496 29.8
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 1.5e-45 188.3 91 95.6
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 9.8e-45 185.7 384 34.9
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 3.2e-43 180.6 111 81.1
Atru.chr12.1162 Acer truncatum HOM05D004210 ORTHO05D005017 7.8e-42 176.0 150 69.3
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 1.2e-39 168.7 411 30.4
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 1.2e-37 162.2 118 66.1
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 2.9e-36 157.5 98 78.6
Manes.13G077544 Manihot esculenta HOM05D004210 ORTHO05D005017 1.4e-35 155.2 165 63.6
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 1.3e-28 132.1 86 73.3
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 2.7e-18 97.8 163 37.4
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 5.3e-14 83.6 40 95.0
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 2.6e-13 81.3 40 90.0
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 8.4e-12 76.3 48 72.9
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 2.7e-10 71.2 37 83.8
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 6.7e-09 66.6 33 84.8
Ah.01g023330 Amaranthus hybridus HOM05D002236 ORTHO05D002341 5.6e-08 63.5 369 21.7
Medtr3g040320 Medicago truncatula HOM05D004210 ORTHO05D005017 5.6e-08 63.5 57 54.4
CARHR257330 Cardamine hirsuta HOM05D000992 ORTHO05D001928 4.8e-07 60.5 246 24.8
BcaC03g17042 Brassica carinata HOM05D000992 ORTHO05D001928 1.8e-06 58.5 242 25.2
C02p49570 Brassica napus HOM05D000992 ORTHO05D001928 1.8e-06 58.5 242 25.2
Aa31LG2G8460 Aethionema arabicum HOM05D000992 ORTHO05D001928 3.1e-06 57.8 231 24.2
GSVIVG01001162001 Vitis vinifera HOM05D002943 ORTHO05D002685 4.0e-06 57.4 74 37.8
BcaC01g03529 Brassica carinata HOM05D004210 ORTHO05D005017 6.9e-06 56.6 98 37.8
BcaC06g34176 Brassica carinata HOM05D000137 ORTHO05D001928 6.9e-06 56.6 239 24.3
A02p32000 Brassica napus HOM05D000992 ORTHO05D001928 6.9e-06 56.6 243 24.3
BraA02t08211Z Brassica rapa HOM05D000992 ORTHO05D001928 6.9e-06 56.6 243 24.3
CARHR143990 Cardamine hirsuta HOM05D000992 ORTHO05D001928 6.9e-06 56.6 247 24.7
Gohir.D01G058500 Gossypium hirsutum HOM05D002303 ORTHO05D007639 6.9e-06 56.6 319 23.2
HPP92_014544 Vanilla planifolia HOM05D002236 ORTHO05D002341 6.9e-06 56.6 359 20.9
Lsat_1_v5_gn_3_127420 Lactuca sativa HOM05D001259 ORTHO05D001103 9.0e-06 56.2 97 32.0


User provided reference genes

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