Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 2.8e-71 271.9 147 100.0
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 3.7e-71 271.6 147 99.3
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 1.1e-70 270.0 147 99.3
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 4.5e-69 264.6 147 96.6
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 1.7e-68 262.7 145 96.6
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 1.1e-64 250.0 140 95.7
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 4.3e-64 248.1 146 90.4
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 9.7e-64 246.9 146 89.7
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 8.2e-63 243.8 146 88.4
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 1.1e-62 243.4 146 88.4
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 3.1e-62 241.9 146 89.0
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 3.1e-62 241.9 146 89.0
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 2.0e-61 239.2 146 88.4
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 5.9e-61 237.7 140 90.7
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 1.0e-60 236.9 147 84.4
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 3.8e-60 235.0 142 88.7
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 3.8e-60 235.0 148 84.5
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 3.8e-60 235.0 148 84.5
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 5.0e-60 234.6 145 84.1
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 8.5e-60 233.8 142 86.6
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 1.4e-59 233.0 139 87.8
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 1.9e-59 232.6 147 83.7
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 1.9e-59 232.6 147 83.7
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 1.9e-59 232.6 147 83.7
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 2.5e-59 232.3 144 84.7
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 2.5e-59 232.3 144 85.4
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 4.2e-59 231.5 145 84.1
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 4.2e-59 231.5 145 84.1
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 7.2e-59 230.7 148 85.1
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 7.2e-59 230.7 146 83.6
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.2e-58 229.9 146 84.9
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 1.2e-58 229.9 140 85.7
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 1.6e-58 229.6 147 83.7
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 1.6e-58 229.6 149 83.9
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 2.1e-58 229.2 146 84.2
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 2.7e-58 228.8 147 83.0
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 4.6e-58 228.0 139 85.6
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 4.6e-58 228.0 145 82.8
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 4.6e-58 228.0 142 85.2
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 4.6e-58 228.0 141 85.1
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 6.1e-58 227.6 139 86.3
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 6.1e-58 227.6 147 80.3
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 6.1e-58 227.6 144 83.3
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 7.9e-58 227.3 148 80.4
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 7.9e-58 227.3 144 84.7
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 7.9e-58 227.3 139 84.9
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 7.9e-58 227.3 140 85.0
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 7.9e-58 227.3 140 85.0
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 1.0e-57 226.9 139 86.3
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 1.4e-57 226.5 139 87.1
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 1.4e-57 226.5 140 86.4
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 1.8e-57 226.1 147 83.7
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 2.3e-57 225.7 139 85.6
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 2.3e-57 225.7 139 84.9
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 2.3e-57 225.7 148 81.1
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 3.0e-57 225.3 141 85.1
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 3.0e-57 225.3 140 84.3
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 3.9e-57 224.9 145 84.1
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 3.9e-57 224.9 140 83.6
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 3.9e-57 224.9 144 82.6
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 8.8e-57 223.8 144 84.0
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 1.9e-56 222.6 146 83.6
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 1.9e-56 222.6 141 83.7
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 2.5e-56 222.2 140 83.6
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 2.5e-56 222.2 140 82.1
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 4.3e-56 221.5 143 79.7
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 4.3e-56 221.5 140 83.6
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 4.3e-56 221.5 140 83.6
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 4.3e-56 221.5 140 82.9
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 5.7e-56 221.1 139 81.3
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 5.7e-56 221.1 139 84.9
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 5.7e-56 221.1 144 81.2
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 7.4e-56 220.7 139 84.9
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 7.4e-56 220.7 136 83.8
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 9.7e-56 220.3 139 82.7
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 1.3e-55 219.9 139 84.9
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 1.3e-55 219.9 134 84.3
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.3e-55 219.9 140 81.4
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 2.2e-55 219.2 140 82.1
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 2.2e-55 219.2 140 82.1
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 2.2e-55 219.2 140 82.1
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 3.7e-55 218.4 139 82.7
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 3.7e-55 218.4 148 78.4
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 6.3e-55 217.6 139 81.3
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 6.3e-55 217.6 139 81.3
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 8.2e-55 217.2 137 83.9
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 8.2e-55 217.2 141 80.9
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 1.1e-54 216.9 143 81.1
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 5.3e-54 214.5 137 83.2
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 9.1e-54 213.8 139 79.9
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 9.1e-54 213.8 139 79.9
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 9.1e-54 213.8 143 79.0
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 2.0e-53 212.6 137 78.1
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 2.6e-53 212.2 135 81.5
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 3.4e-53 211.8 141 78.7
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 4.5e-53 211.5 141 78.7
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 3.8e-52 208.4 136 79.4
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 5.0e-52 208.0 143 77.6
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.9e-51 206.1 144 77.1
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 5.5e-51 204.5 144 76.4
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 7.2e-51 204.1 137 77.4
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 9.4e-51 203.8 135 77.8
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 9.4e-51 203.8 135 77.8
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 4.7e-50 201.4 140 76.4
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 6.1e-50 201.1 125 87.2
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 5.1e-49 198.0 149 73.8
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 1.1e-48 196.8 142 76.1
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 2.6e-48 195.7 135 74.8
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 4.4e-48 194.9 142 73.9
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 1.7e-47 193.0 140 72.1
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 2.8e-47 192.2 140 72.1
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 6.3e-47 191.0 145 67.6
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 6.3e-47 191.0 139 74.1
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 6.3e-47 191.0 139 74.1
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 6.3e-47 191.0 139 74.1
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 8.2e-47 190.7 140 71.4
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 1.1e-46 190.3 142 73.2
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 1.4e-46 189.9 143 72.7
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 3.1e-46 188.7 136 72.8
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 3.1e-46 188.7 139 71.9
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 4.1e-46 188.3 142 72.5
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 5.3e-46 188.0 138 69.6
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 5.3e-46 188.0 134 73.9
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 1.3e-44 183.3 142 72.5
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 1.7e-44 183.0 142 72.5
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 8.5e-44 180.6 147 70.7
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 8.5e-44 180.6 147 70.7
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 4.2e-43 178.3 116 78.4
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 5.5e-43 177.9 118 81.4
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 1.0e-41 173.7 135 68.1
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 3.0e-41 172.2 147 61.9
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 5.2e-41 171.4 142 63.4
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 1.5e-40 169.9 142 66.9
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 1.1e-38 163.7 144 63.2
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 4.2e-35 151.8 142 57.0
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 4.2e-35 151.8 132 63.6
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 6.7e-33 144.4 130 62.3
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 1.3e-31 140.2 130 56.2
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 1.5e-27 126.7 140 54.3
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 2.6e-24 115.9 109 61.5
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 2.8e-23 112.5 104 62.5
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 4.8e-23 111.7 80 76.2
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 5.0e-20 101.7 131 42.7
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 4.2e-19 98.6 138 39.9
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 4.1e-14 82.0 87 50.6
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 7.0e-14 81.3 49 79.6


User provided reference genes

Program Settings