Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G116200 Glycine max HOM05D005581 ORTHO05D006792 1.8e-116 422.5 203 100.0
VMungo1215G0614 Vigna mungo HOM05D005581 ORTHO05D006792 9.1e-97 357.1 197 83.8
TPR.G39154 Trifolium pratense HOM05D005581 ORTHO05D006792 9.5e-94 347.1 204 80.4
Phvul.003G125600 Phaseolus vulgaris HOM05D005581 ORTHO05D006792 1.2e-93 346.7 192 83.3
Medtr7g030020 Medicago truncatula HOM05D005581 ORTHO05D006792 2.9e-90 335.5 198 78.8
Medtr7g038730 Medicago truncatula HOM05D005581 ORTHO05D006792 2.9e-90 335.5 198 78.8
Psat3g165640 Pisum sativum HOM05D005581 ORTHO05D006792 4.6e-88 328.2 194 77.8
Lalb_Chr05g0228941 Lupinus albus HOM05D005581 ORTHO05D006792 3.3e-86 322.0 189 80.4
Ca_19611_v3 Cicer arietinum L. HOM05D005581 ORTHO05D006792 4.0e-84 315.1 192 79.2
arahy.Tifrunner.gnm1.ann1.2M0NJC Arachis hypogaea HOM05D005581 ORTHO05D006792 3.4e-83 312.0 189 77.2
arahy.Tifrunner.gnm1.ann1.E9CGF1 Arachis hypogaea HOM05D005581 ORTHO05D006792 1.7e-82 309.7 189 76.7
Lj2g0014392 Lotus japonicus HOM05D005581 ORTHO05D006792 2.9e-82 308.9 190 77.4
Lj2g0006948 Lotus japonicus HOM05D005581 ORTHO05D006792 4.9e-82 308.1 176 80.7
GSVIVG01032543001 Vitis vinifera HOM05D005581 ORTHO05D006792 4.9e-82 308.1 198 72.7
Cfa007475 Carpinus fangiana HOM05D005581 ORTHO05D006792 4.1e-81 305.1 198 70.7
Ciclev10012718m.g Citrus clementina HOM05D005581 ORTHO05D006792 5.4e-81 304.7 201 71.1
Eucgr.J02171 Eucalyptus grandis HOM05D005581 ORTHO05D006792 7.0e-81 304.3 184 74.5
TAR629G0716 Trochodendron aralioides HOM05D005581 ORTHO05D006792 9.2e-81 303.9 185 74.6
Potri.001G470300 Populus trichocarpa HOM05D005581 ORTHO05D006792 8.6e-79 297.4 196 71.4
Prupe.3G278300 Prunus persica HOM05D005581 ORTHO05D006792 1.1e-78 297.0 197 70.6
QL02p078462 Quercus lobata HOM05D005581 ORTHO05D006792 1.1e-78 297.0 191 72.8
CiPaw.04G022300 Carya illinoinensis HOM05D005581 ORTHO05D006792 3.3e-78 295.4 197 69.0
arahy.Tifrunner.gnm1.ann1.B679M5 Arachis hypogaea HOM05D005581 ORTHO05D006792 4.3e-78 295.0 171 79.5
Dinv33676 Davidia involucrata HOM05D005581 ORTHO05D006792 7.3e-78 294.3 200 66.5
Actinidia36059 Actinidia chinensis HOM05D005581 ORTHO05D006792 9.5e-78 293.9 182 74.2
CSS0034562 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 1.2e-77 293.5 176 76.7
CSS0041908 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 1.2e-77 293.5 176 76.7
arahy.Tifrunner.gnm1.ann1.UYM2HQ Arachis hypogaea HOM05D005581 ORTHO05D006792 1.6e-77 293.1 171 78.9
Nn3g17019 Nelumbo nucifera HOM05D005581 ORTHO05D006792 2.1e-77 292.7 177 75.7
Ciclev10016724m.g Citrus clementina HOM05D005581 ORTHO05D006792 8.1e-77 290.8 194 69.6
Manes.15G178800 Manihot esculenta HOM05D005581 ORTHO05D006792 8.1e-77 290.8 191 71.2
PGR083G1021 Punica granatum HOM05D005581 ORTHO05D006792 1.8e-76 289.7 189 70.9
Hund12510 Selenicereus undatus HOM05D005581 ORTHO05D006792 1.8e-76 289.7 194 71.1
Sabra16G0319200 Salix brachista HOM05D005581 ORTHO05D006792 2.3e-76 289.3 190 72.1
Hma1.2p1_1975F.1_g309690 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 4.0e-76 288.5 192 68.8
Actinidia06044 Actinidia chinensis HOM05D005581 ORTHO05D006792 6.8e-76 287.7 186 70.4
Lalb_Chr21g0319231 Lupinus albus HOM05D005581 ORTHO05D006792 2.0e-75 286.2 194 70.6
RhsimUnG0168100 Rhododendron simsii HOM05D005581 ORTHO05D006792 2.6e-75 285.8 192 68.8
Thecc.04G002800 Theobroma cacao HOM05D005581 ORTHO05D006792 2.6e-75 285.8 198 67.7
MBI15_g35865_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 5.8e-75 284.6 196 69.4
RcHm_v2.0_Chr2g0170291 Rosa chinensis HOM05D005581 ORTHO05D006792 5.8e-75 284.6 196 67.3
TWI12G0742 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 5.8e-75 284.6 185 73.0
Cpa.g.sc14.80 Carica papaya HOM05D005581 ORTHO05D006792 1.3e-74 283.5 198 67.7
Duzib147G0516 Durio zibethinus HOM05D005581 ORTHO05D006792 1.3e-74 283.5 198 68.2
PSO591G0467 Papaver somniferum HOM05D005581 ORTHO05D006792 2.2e-74 282.7 191 68.1
Sc06g0002610 Simmondsia chinensis HOM05D005581 ORTHO05D006792 2.2e-74 282.7 187 70.1
PSO832G0275 Papaver somniferum HOM05D005581 ORTHO05D006792 2.9e-74 282.3 172 71.5
Oeu062376.1 Olea europaea HOM05D005581 ORTHO05D006792 1.1e-73 280.4 175 76.0
PSO063G2781 Papaver somniferum HOM05D005581 ORTHO05D006792 1.9e-73 279.6 178 68.5
MSTRG.23979 Avicennia marina HOM05D005581 ORTHO05D006792 3.2e-73 278.9 191 68.1
COL.COLO4_06153 Corchorus olitorius HOM05D000793 ORTHO05D000783 4.1e-73 278.5 193 66.8
Duzib187G0556 Durio zibethinus HOM05D005581 ORTHO05D006792 4.1e-73 278.5 178 71.3
MELO3C033644.2 Cucumis melo HOM05D005581 ORTHO05D006792 1.6e-72 276.6 180 69.4
Hma1.2p1_0375F.1_g139010 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 1.6e-72 276.6 185 67.6
MD17G1040700 Malus domestica HOM05D005581 ORTHO05D006792 2.1e-72 276.2 176 72.2
Sed0016453 Sechium edule HOM05D005581 ORTHO05D006792 3.5e-72 275.4 177 70.1
FAN05G2284 Fragaria x ananassa HOM05D005581 ORTHO05D006792 4.6e-72 275.0 178 70.8
DCAR_003657 Daucus carota HOM05D005581 ORTHO05D006792 6.0e-72 274.6 196 64.8
Sopen02g032000 Solanum pennellii HOM05D005581 ORTHO05D006792 7.8e-72 274.2 197 63.5
Peaxi162Scf00129g00828 Petunia axillaris HOM05D000793 ORTHO05D000783 1.0e-71 273.9 192 65.1
CsaV3_5G037490 Cucumis sativus L. HOM05D005581 ORTHO05D006792 1.3e-71 273.5 180 68.3
ATR0624G029 Amborella trichopoda HOM05D005581 ORTHO05D006792 2.3e-71 272.7 175 71.4
CDE06G0044 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 2.3e-71 272.7 194 62.9
Nitab4.5_0007185g0080 Nicotiana tabacum HOM05D005581 ORTHO05D006792 2.3e-71 272.7 172 69.8
SHI25585 Sapria himalayana HOM05D005581 ORTHO05D006792 2.3e-71 272.7 194 65.5
Solyc02g087250.4 Solanum lycopersicum HOM05D000793 ORTHO05D000783 2.3e-71 272.7 195 64.1
FvH4_6g50030 Fragaria vesca HOM05D005581 ORTHO05D006792 3.9e-71 271.9 190 66.8
FAN09G0871 Fragaria x ananassa HOM05D005581 ORTHO05D006792 3.9e-71 271.9 190 66.8
FAN14G0942 Fragaria x ananassa HOM05D005581 ORTHO05D006792 3.9e-71 271.9 190 66.8
Atru.BG.224.p Acer truncatum HOM05D005581 ORTHO05D006792 5.1e-71 271.6 165 74.5
Nitab4.5_0004905g0030 Nicotiana tabacum HOM05D000793 ORTHO05D006792 5.1e-71 271.6 196 64.3
Gohir.A05G361700 Gossypium hirsutum HOM05D005581 ORTHO05D006792 6.6e-71 271.2 178 68.5
Aqoxy3G03110 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 3.3e-70 268.9 185 64.3
PGSC0003DMG400001392 Solanum tuberosum HOM05D005581 ORTHO05D006792 3.3e-70 268.9 192 63.5
Oeu031508.1 Olea europaea HOM05D005581 ORTHO05D006792 4.3e-70 268.5 189 66.1
EL10Ac7g18001 Beta vulgaris HOM05D005581 ORTHO05D006792 5.6e-70 268.1 214 62.6
CAN.G206.63 Capsicum annuum HOM05D005581 ORTHO05D006792 9.5e-70 267.3 198 62.6
Lsat_1_v5_gn_0_16520 Lactuca sativa HOM05D005581 ORTHO05D006792 9.5e-70 267.3 203 61.6
DCAR_011192 Daucus carota HOM05D005581 ORTHO05D006792 1.2e-69 266.9 211 63.5
Migut.H00163 Erythranthe guttata HOM05D005581 ORTHO05D006792 1.2e-69 266.9 179 68.2
Os06g0238300 Oryza sativa ssp. japonica HOM05D005581 ORTHO05D006792 1.6e-69 266.5 170 68.8
Carub.0003s2629 Capsella rubella HOM05D005581 ORTHO05D006792 2.1e-69 266.2 175 69.7
ECA240G2828 Erigeron canadensis HOM05D005581 ORTHO05D006792 2.8e-69 265.8 185 65.9
PSO832G2358 Papaver somniferum HOM05D005581 ORTHO05D006792 2.8e-69 265.8 189 62.4
Zm00001eb279970 Zea mays HOM05D005581 ORTHO05D006792 2.8e-69 265.8 185 64.9
AUR62022121 Chenopodium quinoa HOM05D005581 ORTHO05D006792 3.6e-69 265.4 195 64.6
SGA_v2.0_scaffold135G34832 Striga asiatica HOM05D005581 ORTHO05D006792 6.2e-69 264.6 180 68.3
Gohir.D07G224600 Gossypium hirsutum HOM05D005581 ORTHO05D006792 8.1e-69 264.2 191 63.9
Gorai.001G259000 Gossypium raimondii HOM05D005581 ORTHO05D006792 8.1e-69 264.2 194 62.9
HPP92_026859 Vanilla planifolia HOM05D005581 ORTHO05D006792 1.1e-68 263.8 185 64.9
Gohir.A07G217500 Gossypium hirsutum HOM05D005581 ORTHO05D006792 2.3e-68 262.7 191 63.4
Gorai.012G059200 Gossypium raimondii HOM05D005581 ORTHO05D006792 2.3e-68 262.7 186 65.1
Gohir.D04G052800 Gossypium hirsutum HOM05D005581 ORTHO05D006792 8.9e-68 260.8 190 63.2
CARHR102620 Cardamine hirsuta HOM05D005581 ORTHO05D006792 1.5e-67 260.0 190 64.2
Aqoxy3G03108 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 2.6e-67 259.2 168 69.0
AL3G42310 Arabidopsis lyrata HOM05D005581 ORTHO05D006792 2.6e-67 259.2 180 67.2
SalBow1G8695 Salvia bowleyana HOM05D005581 ORTHO05D006792 2.6e-67 259.2 180 66.7
AUR62001208 Chenopodium quinoa HOM05D005581 ORTHO05D006792 5.8e-67 258.1 190 64.2
AT2G04690 Arabidopsis thaliana HOM05D005581 ORTHO05D006792 2.2e-66 256.1 178 68.0
ClCG00G001710 Citrullus lanatus HOM05D005581 ORTHO05D006792 4.9e-66 255.0 193 62.7
ClCG09G018630 Citrullus lanatus HOM05D005581 ORTHO05D006792 4.9e-66 255.0 193 62.7
Thhalv10027934m.g Eutrema salsugineum HOM05D005581 ORTHO05D006792 6.4e-66 254.6 189 64.0
Sp7g01930 Schrenkiella parvula HOM05D005581 ORTHO05D006792 1.6e-64 250.0 180 65.6
TWI12G0286 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 2.7e-64 249.2 175 68.6
EL10Ac7g18000 Beta vulgaris HOM05D005581 ORTHO05D006792 3.5e-64 248.8 184 64.7
Hund20033 Selenicereus undatus HOM05D005581 ORTHO05D006792 1.0e-63 247.3 174 66.7
SEGI_16176 Sequoiadendron giganteum HOM05D005581 ORTHO05D006792 1.7e-63 246.5 187 60.4
C04p46650 Brassica napus HOM05D005581 ORTHO05D006792 1.1e-62 243.8 178 65.2
BolC4t26253H Brassica oleracea HOM05D005581 ORTHO05D006792 1.1e-62 243.8 178 65.2
Lj7A408G12 Lonicera japonica HOM05D005581 ORTHO05D006792 1.9e-62 243.0 146 72.6
BraA04t16955Z Brassica rapa HOM05D005581 ORTHO05D006792 3.3e-62 242.3 178 65.2
vmacro05787 Vaccinium macrocarpon HOM05D005581 ORTHO05D006792 3.3e-62 242.3 153 73.2
A04p12950 Brassica napus HOM05D005581 ORTHO05D006792 5.6e-62 241.5 178 65.2
BcaB06g27424 Brassica carinata HOM05D005581 ORTHO05D006792 1.2e-61 240.4 194 59.8
Psat3g011960 Pisum sativum HOM05D005581 ORTHO05D006792 2.4e-60 236.1 149 77.2
THA.LOC104823921 Tarenaya hassleriana HOM05D005581 ORTHO05D006792 8.9e-60 234.2 189 59.3
MD09G1040100 Malus domestica HOM05D005581 ORTHO05D006792 2.6e-59 232.6 288 45.5
Atru.chr8.2410 Acer truncatum HOM05D005581 ORTHO05D006792 3.0e-55 219.2 129 72.1
SMO356G0730 Selaginella moellendorffii HOM05D005581 ORTHO05D006792 2.0e-51 206.5 165 58.8
Aa31LG9G1540 Aethionema arabicum HOM05D005581 ORTHO05D006792 3.4e-51 205.7 147 69.4
AagrBONN_evm.TU.Sc2ySwM_368.1768 Anthoceros agrestis HOM05D005581 ORTHO05D006792 4.2e-49 198.7 166 56.6
Mapoly0035s0056 Marchantia polymorpha HOM05D005581 ORTHO05D006792 2.7e-48 196.1 164 51.8
Cc07_g02660 Coffea canephora HOM05D005581 ORTHO05D006792 2.3e-47 193.0 149 60.4
Haze_14640 Corylus avellana HOM05D005581 ORTHO05D006792 8.1e-45 184.5 124 68.5
Pp3c1_40840 Physcomitrium patens HOM05D005581 ORTHO05D006792 1.9e-41 173.3 165 49.1
Glyma.17G043600 Glycine max HOM05D005581 ORTHO05D006792 4.3e-38 162.2 79 93.7
CBR_g36833 Chara braunii HOM05D005581 ORTHO05D006792 3.1e-36 156.0 193 43.5
MSTRG.21916 Avicennia marina HOM05D005581 ORTHO05D006792 1.2e-35 154.1 168 50.6
Migut.N00270 Erythranthe guttata HOM05D005581 ORTHO05D006792 1.2e-35 154.1 171 48.0
Migut.H00166 Erythranthe guttata HOM05D005581 ORTHO05D006792 1.4e-33 147.1 159 48.4
Migut.H00162 Erythranthe guttata HOM05D005581 ORTHO05D006792 2.1e-32 143.3 154 46.1
PRCOL_00005184 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 1.8e-31 140.2 169 40.2
Cre10.g440700 Chlamydomonas reinhardtii HOM05D005581 ORTHO05D006792 3.8e-26 122.5 205 31.7
SalBow3G2496 Salvia bowleyana HOM05D005581 ORTHO05D006792 3.8e-26 122.5 166 41.0
HPP92_018422 Vanilla planifolia HOM05D005581 ORTHO05D006792 1.4e-20 104.0 61 68.9
HanXRQChr17g0548091 Helianthus annuus HOM05D005581 ORTHO05D006792 5.7e-14 82.0 65 56.9
PRCOL_00002387 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 2.8e-13 79.7 167 30.5
arahy.Tifrunner.gnm1.ann1.C3UJQ4 Arachis hypogaea HOM05D005581 ORTHO05D006792 8.2e-13 78.2 71 56.3
CDE06G0755 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 9.1e-12 74.7 56 60.7
MBI15_g46244_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 4.5e-11 72.4 173 32.4


User provided reference genes

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