Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G114300 Glycine max HOM05D005951 ORTHO05D007025 6.2e-126 454.1 230 100.0
Glyma.17G045500 Glycine max HOM05D005951 ORTHO05D007025 7.1e-122 440.7 230 96.1
VMungo1215G3086 Vigna mungo HOM05D005951 ORTHO05D007025 9.3e-122 440.3 230 95.7
Phvul.003G127300 Phaseolus vulgaris HOM05D005951 ORTHO05D007025 2.3e-120 435.6 230 95.7
Lj4g0000458 Lotus japonicus HOM05D005951 ORTHO05D007025 3.4e-116 421.8 230 90.4
Medtr4g124640 Medicago truncatula HOM05D005951 ORTHO05D007025 9.3e-114 413.7 227 91.2
Ca_21339_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002721 1.6e-113 412.9 236 89.4
arahy.Tifrunner.gnm1.ann1.JRQ3DB Arachis hypogaea HOM05D005951 ORTHO05D007025 2.7e-113 412.1 233 88.8
arahy.Tifrunner.gnm1.ann1.7AU96Q Arachis hypogaea HOM05D005951 ORTHO05D007025 3.5e-113 411.8 234 88.5
Lalb_Chr07g0181411 Lupinus albus HOM05D005951 ORTHO05D007025 7.4e-111 404.1 231 88.7
TPR.G12577 Trifolium pratense HOM05D005951 ORTHO05D007025 7.4e-111 404.1 232 89.2
Duzib168G0975 Durio zibethinus HOM05D005951 ORTHO05D007025 1.3e-110 403.3 234 87.2
Gorai.009G038100 Gossypium raimondii HOM05D005951 ORTHO05D007025 2.8e-110 402.1 234 87.2
Lalb_Chr13g0299191 Lupinus albus HOM05D005951 ORTHO05D007025 2.8e-110 402.1 237 87.3
Cpa.g.sc82.63 Carica papaya HOM05D005951 ORTHO05D007025 8.2e-110 400.6 238 84.9
Potri.006G136500 Populus trichocarpa HOM05D005951 ORTHO05D007025 4.1e-109 398.3 236 84.3
Thecc.09G070300 Theobroma cacao HOM05D005951 ORTHO05D007025 4.1e-109 398.3 222 89.2
Atru.chr7.1767 Acer truncatum HOM05D005951 ORTHO05D007025 5.3e-109 397.9 233 84.5
Gohir.D05G037600 Gossypium hirsutum HOM05D005951 ORTHO05D007025 6.9e-109 397.5 234 86.8
GSVIVG01015014001 Vitis vinifera HOM05D005951 ORTHO05D007025 9.0e-109 397.1 230 86.1
CSS0032580 Camellia sinensis var. sinensis HOM05D005951 ORTHO05D007025 2.0e-108 396.0 236 83.1
Dinv25506 Davidia involucrata HOM05D005951 ORTHO05D007025 2.0e-108 396.0 238 84.0
TAR383G1060 Trochodendron aralioides HOM05D005951 ORTHO05D007025 2.0e-108 396.0 232 85.3
CiPaw.03G200400 Carya illinoinensis HOM05D005951 ORTHO05D007025 2.6e-108 395.6 230 85.2
CiPaw.04G140200 Carya illinoinensis HOM05D005951 ORTHO05D007025 2.6e-108 395.6 230 85.7
Aqoxy7G04154 Aquilegia oxysepala HOM05D005951 ORTHO05D007025 7.7e-108 394.0 232 84.1
Gohir.A05G036100 Gossypium hirsutum HOM05D005951 ORTHO05D007025 1.3e-107 393.3 242 83.9
Duzib150G0422 Durio zibethinus HOM05D005951 ORTHO05D007025 1.7e-107 392.9 235 85.1
Manes.16G090500 Manihot esculenta HOM05D005951 ORTHO05D007025 1.7e-107 392.9 240 83.3
Cfa002937 Carpinus fangiana HOM05D005951 ORTHO05D007025 3.8e-107 391.7 230 85.7
Eucgr.C03197 Eucalyptus grandis HOM05D005951 ORTHO05D007025 5.0e-107 391.3 230 83.9
Eucgr.L02230 Eucalyptus grandis HOM05D005951 ORTHO05D007025 5.0e-107 391.3 230 83.9
Nitab4.5_0000170g0090 Nicotiana tabacum HOM05D005951 ORTHO05D007025 5.0e-107 391.3 232 83.2
Sabra06G0106700 Salix brachista HOM05D005951 ORTHO05D007025 6.5e-107 391.0 236 82.6
QL11p002956 Quercus lobata HOM05D005951 ORTHO05D007025 8.5e-107 390.6 233 84.1
MD02G1102200 Malus domestica HOM05D005951 ORTHO05D007025 3.2e-106 388.7 234 82.1
Peaxi162Scf00474g00521 Petunia axillaris HOM05D005951 ORTHO05D007025 5.5e-106 387.9 230 82.2
Potri.018G063600 Populus trichocarpa HOM05D005951 ORTHO05D007025 7.2e-106 387.5 239 80.8
Actinidia39617 Actinidia chinensis HOM05D005951 ORTHO05D007025 1.2e-105 386.7 234 82.9
COL.COLO4_21208 Corchorus olitorius HOM05D005951 ORTHO05D007025 2.1e-105 386.0 234 85.0
Nn6g35632 Nelumbo nucifera HOM05D005951 ORTHO05D007025 2.1e-105 386.0 233 83.7
Sed0006808 Sechium edule HOM05D005951 ORTHO05D007025 2.7e-105 385.6 233 81.1
ClCG03G014750 Citrullus lanatus HOM05D005951 ORTHO05D007025 4.6e-105 384.8 233 81.1
Sed0027227 Sechium edule HOM05D005951 ORTHO05D007025 6.1e-105 384.4 233 81.1
Haze_26069 Corylus avellana HOM05D005951 ORTHO05D007025 1.4e-104 383.3 245 81.2
ATR0317G112 Amborella trichopoda HOM05D005951 ORTHO05D007025 1.8e-104 382.9 232 82.3
Manes.03G044600 Manihot esculenta HOM05D005951 ORTHO05D007025 1.8e-104 382.9 235 81.3
CANSAT56G0193 Cannabis sativa HOM05D005951 ORTHO05D007025 3.0e-104 382.1 239 79.5
TWI34G0930 Tripterygium wilfordii HOM05D005951 ORTHO05D007025 3.9e-104 381.7 236 81.8
CANSAT56G0116 Cannabis sativa HOM05D005951 ORTHO05D007025 6.7e-104 380.9 239 79.5
CsaV3_1G041410 Cucumis sativus L. HOM05D005951 ORTHO05D007025 8.8e-104 380.6 233 81.1
Prupe.7G192100 Prunus persica HOM05D005951 ORTHO05D007025 1.9e-103 379.4 233 80.3
Ciclev10009369m.g Citrus clementina HOM05D005951 ORTHO05D007025 2.5e-103 379.0 233 81.5
CAN.G54.13 Capsicum annuum HOM05D005951 ORTHO05D007025 3.3e-103 378.6 232 80.6
RcHm_v2.0_Chr2g0095941 Rosa chinensis HOM05D005951 ORTHO05D007025 3.3e-103 378.6 228 79.4
MD15G1223700 Malus domestica HOM05D005951 ORTHO05D007025 4.3e-103 378.3 234 80.3
FvH4_1g09390 Fragaria vesca HOM05D005951 ORTHO05D007025 7.4e-103 377.5 222 82.0
FAN19G2090 Fragaria x ananassa HOM05D005951 ORTHO05D007025 7.4e-103 377.5 222 82.0
FAN26G0600 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.3e-102 376.7 222 82.0
FAN26G2189 Fragaria x ananassa HOM05D005951 ORTHO05D007025 2.2e-102 375.9 222 81.1
MBI13_g01673_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 2.8e-102 375.6 229 81.7
FAN28G0037 Fragaria x ananassa HOM05D005951 ORTHO05D007025 3.7e-102 375.2 222 81.1
FAN28G0822 Fragaria x ananassa HOM05D005951 ORTHO05D007025 3.7e-102 375.2 222 81.1
Lsat_1_v5_gn_5_138841 Lactuca sativa HOM05D005951 ORTHO05D007025 3.7e-102 375.2 233 77.7
PGSC0003DMG400013572 Solanum tuberosum HOM05D005951 ORTHO05D007025 3.7e-102 375.2 225 81.3
Solyc07g042570.3 Solanum lycopersicum HOM05D005951 ORTHO05D007025 8.2e-102 374.0 225 80.9
Cc06_g12700 Coffea canephora HOM05D005951 ORTHO05D007025 4.1e-101 371.7 221 81.9
Sopen07g022260 Solanum pennellii HOM05D005951 ORTHO05D007025 4.1e-101 371.7 225 80.0
PSO724G0923 Papaver somniferum HOM05D005951 ORTHO05D007025 1.5e-100 369.8 231 79.7
MSTRG.26500 Avicennia marina HOM05D005951 ORTHO05D007025 2.6e-100 369.0 229 77.7
PSO135G0575 Papaver somniferum HOM05D005951 ORTHO05D007025 3.4e-100 368.6 231 79.2
PGR044G1586 Punica granatum HOM05D005951 ORTHO05D007025 5.9e-100 367.9 230 80.0
DCAR_028530 Daucus carota HOM05D005951 ORTHO05D007025 1.3e-99 366.7 233 79.0
FAN23G1113 Fragaria x ananassa HOM05D005951 ORTHO05D007025 2.2e-99 365.9 226 78.8
EL10Ac8g18966 Beta vulgaris HOM05D005951 ORTHO05D007025 2.9e-99 365.5 220 80.5
Oeu041808.1 Olea europaea HOM05D005951 ORTHO05D007025 5.0e-99 364.8 228 76.8
AUR62028321 Chenopodium quinoa HOM05D005951 ORTHO05D007025 8.5e-99 364.0 220 80.0
THA.LOC104803783 Tarenaya hassleriana HOM05D005951 ORTHO05D007025 1.2e-97 360.1 232 75.4
BraA01t00476Z Brassica rapa HOM05D000526 ORTHO05D007025 6.1e-97 357.8 232 75.9
ECA234G1587 Erigeron canadensis HOM05D005951 ORTHO05D007025 7.9e-97 357.5 231 75.3
HPP92_004361 Vanilla planifolia HOM05D005951 ORTHO05D007025 7.9e-97 357.5 222 77.5
BcaB03g12809 Brassica carinata HOM05D005951 ORTHO05D007025 1.0e-96 357.1 232 74.1
Migut.J00881 Erythranthe guttata HOM05D005951 ORTHO05D007025 1.8e-96 356.3 227 76.2
Os03g0182700 Oryza sativa ssp. japonica HOM05D005951 ORTHO05D007025 2.3e-96 355.9 225 77.8
CDE07G2051 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 3.0e-96 355.5 234 75.6
Sp7g31000 Schrenkiella parvula HOM05D005951 ORTHO05D007025 3.0e-96 355.5 232 74.6
BcaC09g52137 Brassica carinata HOM05D005951 ORTHO05D007025 3.9e-96 355.1 232 75.4
SGA_v2.0_scaffold55G19875 Striga asiatica HOM05D005951 ORTHO05D007025 3.9e-96 355.1 227 78.9
BcaC01g01000 Brassica carinata HOM05D005951 ORTHO05D007025 5.1e-96 354.8 232 73.7
BolC3t20971H Brassica oleracea HOM05D005951 ORTHO05D007025 5.1e-96 354.8 232 73.7
BraA08t33722Z Brassica rapa HOM05D005951 ORTHO05D007025 6.7e-96 354.4 233 74.2
Thhalv10026154m.g Eutrema salsugineum HOM05D005951 ORTHO05D007025 1.5e-95 353.2 232 74.1
C01p05390 Brassica napus HOM05D000526 ORTHO05D000956 2.0e-95 352.8 230 76.1
C03p86770 Brassica napus HOM05D005951 ORTHO05D007025 2.0e-95 352.8 233 74.2
BolC1t00519H Brassica oleracea HOM05D000526 ORTHO05D007025 7.4e-95 350.9 227 75.3
Aa31LG5G9380 Aethionema arabicum HOM05D005951 ORTHO05D007025 1.3e-94 350.1 232 75.0
Zm00001eb401690 Zea mays HOM05D005951 ORTHO05D007025 1.3e-94 350.1 219 79.5
AL7G18300 Arabidopsis lyrata HOM05D005951 ORTHO05D007025 2.2e-94 349.4 220 76.4
A08p17720 Brassica napus HOM05D005951 ORTHO05D007025 2.8e-94 349.0 228 73.7
HanXRQChr10g0319821 Helianthus annuus HOM05D005951 ORTHO05D007025 1.8e-93 346.3 231 74.9
vmacro17078 Vaccinium macrocarpon HOM05D005951 ORTHO05D007025 1.8e-93 346.3 321 60.1
Carub.0007s0721 Capsella rubella HOM05D005951 ORTHO05D007025 2.4e-93 345.9 233 73.0
AT4G33250 Arabidopsis thaliana HOM05D005951 ORTHO05D007025 1.2e-92 343.6 220 76.4
MBI19_g36230_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 3.5e-92 342.0 232 77.2
SEGI_21232 Sequoiadendron giganteum HOM05D005951 ORTHO05D007025 1.0e-91 340.5 235 71.5
MELO3C015553.2 Cucumis melo HOM05D005951 ORTHO05D007025 1.7e-91 339.7 233 74.7
Oeu000276.3 Olea europaea HOM05D005951 ORTHO05D007025 5.0e-91 338.2 304 59.9
A03p61920 Brassica napus HOM05D000526 ORTHO05D007025 1.9e-90 336.3 253 66.4
unitig_899.g15181 Utricularia gibba HOM05D005951 ORTHO05D007025 2.5e-90 335.9 230 70.0
Nitab4.5_0003139g0080 Nicotiana tabacum HOM05D005951 ORTHO05D007025 1.6e-89 333.2 232 73.3
Lj7C692T6 Lonicera japonica HOM05D005951 ORTHO05D007025 2.7e-89 332.4 229 73.4
Actinidia30258 Actinidia chinensis HOM05D005951 ORTHO05D007025 1.1e-87 327.0 187 85.0
Mapoly0073s0056 Marchantia polymorpha HOM05D005951 ORTHO05D007025 4.4e-87 325.1 222 68.9
Hund26110 Selenicereus undatus HOM05D005951 ORTHO05D007025 7.4e-87 324.3 230 70.4
Pp3c18_14720 Physcomitrium patens HOM05D005951 ORTHO05D007025 2.0e-84 316.2 217 68.2
BcaNung02163 Brassica carinata HOM05D005951 ORTHO05D007025 3.5e-84 315.5 232 68.5
AUR62025338 Chenopodium quinoa HOM05D005951 ORTHO05D007025 3.5e-84 315.5 192 79.2
C07p59570 Brassica napus HOM05D005951 ORTHO05D007025 1.0e-83 313.9 232 68.5
Pp3c21_14860 Physcomitrium patens HOM05D005951 ORTHO05D007025 1.3e-83 313.5 217 66.8
Zm00001eb401710 Zea mays HOM05D005951 ORTHO05D007025 7.2e-82 307.8 198 77.3
BraA03t15230Z Brassica rapa HOM05D005951 ORTHO05D007025 6.1e-81 304.7 188 76.6
Rhsim05G0002100 Rhododendron simsii HOM05D005951 ORTHO05D007025 1.8e-80 303.1 232 67.7
SMO239G0051 Selaginella moellendorffii HOM05D005951 ORTHO05D007025 2.3e-80 302.8 227 61.2
CDE06G1359 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 3.3e-79 298.9 198 75.8
Zm00001eb006150 Zea mays HOM05D005951 ORTHO05D007025 2.0e-71 273.1 168 80.4
BolC7t46402H Brassica oleracea HOM05D005951 ORTHO05D007025 1.7e-70 270.0 197 68.5
Sc08g0009170 Simmondsia chinensis HOM05D005951 ORTHO05D007025 7.2e-66 254.6 153 81.7
Migut.L01596 Erythranthe guttata HOM05D005951 ORTHO05D007025 1.7e-62 243.4 228 57.5
CBR_g16046 Chara braunii HOM05D005951 ORTHO05D007025 3.1e-56 222.6 217 52.5
AagrBONN_evm.TU.Sc2ySwM_117.912 Anthoceros agrestis HOM05D005951 ORTHO05D007025 4.4e-55 218.8 149 68.5
CARHR241300 Cardamine hirsuta HOM05D005951 ORTHO05D007025 8.6e-43 177.9 118 68.6
Cre12.g515650 Chlamydomonas reinhardtii HOM05D005951 ORTHO05D007025 4.1e-37 159.1 191 38.7
SalBow6G6500 Salvia bowleyana HOM05D005951 ORTHO05D007025 3.5e-36 156.0 97 77.3
MD02G1101200 Malus domestica HOM05D005951 ORTHO05D007025 1.1e-32 144.4 105 73.3
PRCOL_00003879 Prasinoderma coloniale HOM05D005951 ORTHO05D007025 6.9e-24 115.2 205 33.7
ATR0705G105 Amborella trichopoda HOM05D005951 ORTHO05D007025 2.8e-09 66.6 72 47.2


User provided reference genes

Program Settings