Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G113900 Glycine max HOM05D005122 ORTHO05D006057 0.0e+00 2618.6 1382 100.0
Glyma.17G045900 Glycine max HOM05D005122 ORTHO05D006057 0.0e+00 2375.1 1392 90.9
VMungo1215G1386 Vigna mungo HOM05D005122 ORTHO05D006057 0.0e+00 1989.5 1413 78.2
Phvul.003G127600 Phaseolus vulgaris HOM05D005122 ORTHO05D006057 0.0e+00 1986.1 1410 77.8
Lj4g0009327 Lotus japonicus HOM05D005122 ORTHO05D006057 0.0e+00 1765.0 1388 70.3
TPR.G12583 Trifolium pratense HOM05D005122 ORTHO05D006057 0.0e+00 1665.2 1449 65.1
Ca_30968_v3 Cicer arietinum L. HOM05D005122 ORTHO05D006057 0.0e+00 1662.9 1393 66.8
arahy.Tifrunner.gnm1.ann1.C788P2 Arachis hypogaea HOM05D005122 ORTHO05D006057 0.0e+00 1639.8 1404 65.6
Medtr4g124670 Medicago truncatula HOM05D005122 ORTHO05D006057 0.0e+00 1639.4 1474 63.4
Lalb_Chr13g0299211 Lupinus albus HOM05D005122 ORTHO05D006057 0.0e+00 1637.1 1498 63.4
arahy.Tifrunner.gnm1.ann1.EYQ1XG Arachis hypogaea HOM05D005122 ORTHO05D006057 0.0e+00 1622.8 1405 65.6
Ca_21337_v3 Cicer arietinum L. HOM05D005122 ORTHO05D006057 0.0e+00 1496.9 1293 65.6
Psat4g019280 Pisum sativum HOM05D005122 ORTHO05D006057 0.0e+00 1484.5 1276 66.5
Haze_26065 Corylus avellana HOM05D005122 ORTHO05D006057 0.0e+00 1226.1 1403 52.8
QL11p002844 Quercus lobata HOM05D005122 ORTHO05D006057 0.0e+00 1172.9 1487 47.9
CiPaw.03G200700 Carya illinoinensis HOM05D005122 ORTHO05D006057 0.0e+00 1166.4 1395 51.1
Cfa002940 Carpinus fangiana HOM05D005122 ORTHO05D006057 0.0e+00 1157.9 1401 50.7
GSVIVG01015020001 Vitis vinifera HOM05D005122 ORTHO05D006057 0.0e+00 1115.9 1382 49.6
Thecc.09G070600 Theobroma cacao HOM05D005122 ORTHO05D006057 0.0e+00 1109.7 1411 48.8
Ciclev10007237m.g Citrus clementina HOM05D005122 ORTHO05D006057 0.0e+00 1105.9 1380 50.0
Potri.006G136900 Populus trichocarpa HOM05D005122 ORTHO05D006057 0.0e+00 1088.6 1438 48.3
Prupe.7G192500 Prunus persica HOM05D005122 ORTHO05D006057 0.0e+00 1082.0 1396 49.2
Duzib168G0854 Durio zibethinus HOM05D005122 ORTHO05D006057 9.7e-307 1057.4 1419 47.7
Manes.16G092800 Manihot esculenta HOM05D005122 ORTHO05D006057 7.9e-301 1037.7 1402 47.0
TWI34G1091 Tripterygium wilfordii HOM05D005122 ORTHO05D006057 2.0e-299 1033.1 1409 47.4
CSS0025527 Camellia sinensis var. sinensis HOM05D005122 ORTHO05D006057 4.3e-299 1031.9 1415 46.9
RcHm_v2.0_Chr2g0095891 Rosa chinensis HOM05D005122 ORTHO05D006057 1.4e-297 1026.9 1408 46.3
CANSAT56G0085 Cannabis sativa HOM05D005122 ORTHO05D006057 5.9e-296 1021.5 1411 45.8
Gohir.A05G035900 Gossypium hirsutum HOM05D005122 ORTHO05D006057 8.5e-295 1017.7 1413 46.6
Gorai.009G037900 Gossypium raimondii HOM05D005122 ORTHO05D006057 1.0e-292 1010.7 1418 47.0
COL.COLO4_21211 Corchorus olitorius HOM05D005122 ORTHO05D006057 3.0e-292 1009.2 1345 48.0
Gohir.D05G037400 Gossypium hirsutum HOM05D005122 ORTHO05D006057 3.0e-292 1009.2 1420 46.8
FvH4_1g09310 Fragaria vesca HOM05D005122 ORTHO05D006057 2.0e-291 1006.5 1458 43.8
FAN28G0954 Fragaria x ananassa HOM05D005122 ORTHO05D006057 2.6e-291 1006.1 1418 45.1
FAN19G2002 Fragaria x ananassa HOM05D005122 ORTHO05D006057 3.3e-291 1005.7 1396 45.2
Sabra06G0107000 Salix brachista HOM05D005122 ORTHO05D006057 1.4e-289 1000.3 1573 43.9
CANSAT56G2058 Cannabis sativa HOM05D005122 ORTHO05D006057 1.5e-286 990.3 1395 45.7
Rhsim03G0225900 Rhododendron simsii HOM05D005122 ORTHO05D006057 1.6e-285 986.9 1385 45.1
Nn8g38537 Nelumbo nucifera HOM05D005122 ORTHO05D006057 3.6e-285 985.7 1420 46.5
MD02G1100300 Malus domestica HOM05D005122 ORTHO05D006057 8.0e-285 984.6 1425 45.1
Nitab4.5_0000170g0030 Nicotiana tabacum HOM05D005122 ORTHO05D006057 8.8e-284 981.1 1403 45.7
Nitab4.5_0007169g0020 Nicotiana tabacum HOM05D005122 ORTHO05D006057 1.6e-277 960.3 1407 44.7
PGR142G3115 Punica granatum HOM05D005122 ORTHO05D006057 1.6e-277 960.3 1399 45.6
CAN.G210.4 Capsicum annuum HOM05D005122 ORTHO05D006057 1.3e-271 940.6 1442 44.8
Cc06_g12660 Coffea canephora HOM05D005122 ORTHO05D006057 1.5e-267 927.2 1424 43.6
Rhsim05G0002500 Rhododendron simsii HOM05D005122 ORTHO05D006057 1.7e-266 923.7 1456 42.7
Lj4A920G55 Lonicera japonica HOM05D005122 ORTHO05D006057 7.0e-265 918.3 1570 41.3
PGSC0003DMG400013574 Solanum tuberosum HOM05D005122 ORTHO05D006057 1.2e-264 917.5 1402 44.2
vmacro06355 Vaccinium macrocarpon HOM05D005122 ORTHO05D006057 1.6e-264 917.1 1385 42.9
ClCG11G000010 Citrullus lanatus HOM05D005122 ORTHO05D006057 3.5e-264 916.0 1397 44.1
Solyc07g042500.4 Solanum lycopersicum HOM05D005122 ORTHO05D006057 2.8e-261 906.4 1412 44.0
Peaxi162Scf00191g00046 Petunia axillaris HOM05D005122 ORTHO05D006057 1.0e-260 904.4 1398 44.0
Sopen07g022170 Solanum pennellii HOM05D005122 ORTHO05D006057 1.7e-258 897.1 1402 43.6
MBI19_g37996_MAGBIO Magnolia biondii HOM05D005122 ORTHO05D006057 9.2e-257 891.3 1445 42.6
MELO3C022901.2 Cucumis melo HOM05D005122 ORTHO05D006057 8.6e-255 884.8 1412 42.8
DCAR_028528 Daucus carota HOM05D005122 ORTHO05D006057 3.3e-254 882.9 1400 42.2
Dinv42429 Davidia involucrata HOM05D005122 ORTHO05D006057 2.6e-251 873.2 1359 43.9
MD15G1223300 Malus domestica HOM05D005122 ORTHO05D006057 9.8e-251 871.3 1308 44.9
Migut.J00884 Erythranthe guttata HOM05D005122 ORTHO05D006057 4.1e-249 865.9 1387 42.6
MSTRG.19429 Avicennia marina HOM05D005122 ORTHO05D006057 9.2e-249 864.8 1384 41.5
EL10Ac8g18978 Beta vulgaris HOM05D005122 ORTHO05D006057 4.6e-248 862.4 1412 42.0
Cpa.g.sc82.66 Carica papaya HOM05D005122 ORTHO05D006057 3.4e-243 846.3 1351 41.8
Aqoxy7G00978 Aquilegia oxysepala HOM05D005122 ORTHO05D006057 2.2e-242 843.6 1410 41.0
BcaC04g18854 Brassica carinata HOM05D005122 ORTHO05D006057 6.6e-239 832.0 1428 39.7
Thhalv10012418m.g Eutrema salsugineum HOM05D005122 ORTHO05D006057 3.1e-236 823.2 1451 40.2
AUR62028313 Chenopodium quinoa HOM05D005122 ORTHO05D006057 5.2e-236 822.4 1399 42.3
BolC9t58866H Brassica oleracea HOM05D005122 ORTHO05D006057 2.2e-234 817.0 1437 39.0
BraA10t44307Z Brassica rapa HOM05D005122 ORTHO05D006057 3.7e-234 816.2 1474 38.9
SalBow6G0425 Salvia bowleyana HOM05D005122 ORTHO05D006057 8.4e-234 815.1 1401 41.2
Hund26106 Selenicereus undatus HOM05D005122 ORTHO05D006057 2.7e-232 810.1 1401 41.5
Aa31LG4G13020 Aethionema arabicum HOM05D005122 ORTHO05D006057 4.6e-232 809.3 1473 39.5
Sp6g27400 Schrenkiella parvula HOM05D005122 ORTHO05D006057 3.9e-231 806.2 1459 38.9
PSO104G0049 Papaver somniferum HOM05D005122 ORTHO05D006057 8.6e-231 805.1 1443 40.4
AT2G03140 Arabidopsis thaliana HOM05D005122 ORTHO05D006057 2.5e-230 803.5 1449 39.2
AUR62025308 Chenopodium quinoa HOM05D005122 ORTHO05D006057 1.6e-229 800.8 1398 41.5
PSO421G0465 Papaver somniferum HOM05D005122 ORTHO05D006057 4.0e-228 796.2 1457 40.5
AL5G12790 Arabidopsis lyrata HOM05D005122 ORTHO05D006057 1.3e-226 791.2 1450 38.4
Carub.0005s0197 Capsella rubella HOM05D005122 ORTHO05D006057 6.4e-226 788.9 1445 39.4
C09p60330 Brassica napus HOM05D005122 ORTHO05D006057 2.1e-224 783.9 1375 39.9
A10p22480 Brassica napus HOM05D005122 ORTHO05D006057 3.5e-224 783.1 1382 39.0
Ah.14g084680 Amaranthus hybridus HOM05D005122 ORTHO05D006057 1.5e-222 777.7 1370 39.9
Sc08g0009130 Simmondsia chinensis HOM05D005122 ORTHO05D006057 6.4e-218 762.3 1399 39.3
ATR0681G090 Amborella trichopoda HOM05D005122 ORTHO05D006057 1.5e-214 751.1 1475 38.4
Sed0023749 Sechium edule HOM05D005122 ORTHO05D006057 2.0e-211 740.7 1386 38.5
ECA234G0156 Erigeron canadensis HOM05D005122 ORTHO05D006057 1.7e-210 737.6 1390 39.4
SGA_v2.0_scaffold31G12693 Striga asiatica HOM05D005122 ORTHO05D006057 5.5e-209 732.6 1325 41.0
CsaV3_5G027680 Cucumis sativus L. HOM05D005122 ORTHO05D006057 9.6e-198 695.3 1188 42.3
HanXRQChr10g0319771 Helianthus annuus HOM05D005122 ORTHO05D006057 5.9e-195 686.0 1384 38.8
Zm00001eb313890 Zea mays HOM05D005122 ORTHO05D006057 3.2e-193 680.2 1392 37.1
CDE04G2636 Ceratophyllum demersum HOM05D005122 ORTHO05D006057 1.8e-188 664.5 1425 35.9
Atru.chr7.1763 Acer truncatum HOM05D005122 ORTHO05D006057 3.0e-175 620.5 617 55.1
THA.LOC104811288 Tarenaya hassleriana HOM05D005122 ORTHO05D006057 4.0e-167 593.6 1110 39.9
Eucgr.C00770 Eucalyptus grandis HOM05D005122 ORTHO05D006057 1.2e-150 538.9 1075 38.9
unitig_27.g24782 Utricularia gibba HOM05D005122 ORTHO05D006057 8.3e-149 532.7 1313 33.1
Actinidia39620 Actinidia chinensis HOM05D005122 ORTHO05D006057 1.1e-140 505.8 408 64.7
Lsat_1_v5_gn_5_139061 Lactuca sativa HOM05D005122 ORTHO05D006057 2.3e-138 498.0 1415 32.4
HPP92_016226 Vanilla planifolia HOM05D005122 ORTHO05D006057 8.6e-138 496.1 728 42.7
TAR624G1119 Trochodendron aralioides HOM05D005122 ORTHO05D006057 8.3e-133 479.6 439 61.0
SEGI_27630 Sequoiadendron giganteum HOM05D005122 ORTHO05D006057 3.5e-131 474.2 1254 32.9
Mapoly0027s0173 Marchantia polymorpha HOM05D005122 ORTHO05D006057 4.7e-112 410.6 1549 28.8
Pp3c18_16020 Physcomitrium patens HOM05D005122 ORTHO05D006057 7.1e-108 396.7 1564 27.2
Atru.chr7.1762 Acer truncatum HOM05D005122 ORTHO05D006057 4.6e-107 394.0 715 42.5
Oeu028111.1 Olea europaea HOM05D005122 ORTHO05D006057 1.3e-101 375.9 419 50.6
AagrBONN_evm.TU.Sc2ySwM_362.1932 Anthoceros agrestis HOM05D005122 ORTHO05D006057 2.1e-99 368.6 1253 28.8
SMO228G0085 Selaginella moellendorffii HOM05D005122 ORTHO05D006057 1.3e-88 332.8 1336 27.8
Os09g0436800 Oryza sativa ssp. japonica HOM05D005122 ORTHO05D006057 1.1e-84 319.7 310 52.9
TAR624G0588 Trochodendron aralioides HOM05D005122 ORTHO05D006057 2.7e-83 315.1 635 38.6
FAN23G0697 Fragaria x ananassa HOM05D005122 ORTHO05D006057 1.6e-67 262.7 434 40.8
arahy.Tifrunner.gnm1.ann1.T9PSLR Arachis hypogaea HOM05D005122 ORTHO05D006057 6.5e-61 240.7 203 65.0
QL10p017739 Quercus lobata HOM05D005122 ORTHO05D006057 6.7e-58 230.7 274 49.3
CBR_g48436 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-56 225.7 950 25.2
arahy.Tifrunner.gnm1.ann1.UG5RRW Arachis hypogaea HOM05D005122 ORTHO05D006057 2.0e-54 219.2 230 53.0
HPP92_016239 Vanilla planifolia HOM05D005122 ORTHO05D006057 1.6e-38 166.4 194 43.8
HPP92_016227 Vanilla planifolia HOM05D005122 ORTHO05D006057 5.9e-38 164.5 472 30.5
TAR624G1201 Trochodendron aralioides HOM05D005122 ORTHO05D006057 9.5e-36 157.1 122 63.1
CARHR152570 Cardamine hirsuta HOM05D005122 ORTHO05D006057 6.1e-35 154.5 205 46.8
QL10p017873 Quercus lobata HOM05D005122 ORTHO05D006057 1.0e-34 153.7 163 50.9
Eucgr.I00075 Eucalyptus grandis HOM05D005122 ORTHO05D006057 2.6e-33 149.1 139 54.7
Oeu045002.1 Olea europaea HOM05D005122 ORTHO05D006057 8.3e-32 144.1 351 35.3
CARHR289930 Cardamine hirsuta HOM05D005122 ORTHO05D006057 1.4e-23 116.7 106 51.9
QL10p017877 Quercus lobata HOM05D005122 ORTHO05D006057 4.1e-23 115.2 250 35.2
MD15G1223200 Malus domestica HOM05D005122 ORTHO05D006057 1.7e-21 109.8 79 67.1
Medtr8g078690 Medicago truncatula HOM05D005122 ORTHO05D000920 3.0e-21 109.0 78 66.7
Actinidia30254 Actinidia chinensis HOM05D005122 ORTHO05D006057 8.0e-19 100.9 140 42.9
Pp3c22_7040 Physcomitrium patens HOM05D005122 ORTHO05D006057 2.4e-15 89.4 595 23.4
PRCOL_00005095 Prasinoderma coloniale HOM05D005122 ORTHO05D006057 2.5e-12 79.3 202 31.2
Oeu037751.1 Olea europaea HOM05D006164 ORTHO05D001269 2.8e-11 75.9 53 69.8
Cpa.g.sc577.1 Carica papaya HOM05D005122 ORTHO05D006057 4.7e-11 75.1 51 68.6
Nn6g32039 Nelumbo nucifera HOM05D005122 ORTHO05D006057 6.2e-11 74.7 44 84.1
CAN.G140.31 Capsicum annuum HOM05D005122 ORTHO05D006057 2.4e-07 62.8 86 43.0
Oeu004189.1 Olea europaea HOM05D006164 ORTHO05D001269 2.1e-06 59.7 147 32.7


User provided reference genes

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