Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G113300 Glycine max HOM05D007531 ORTHO05D009484 2.7e-34 148.3 85 100.0
Phvul.004G046500 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 4.8e-23 110.9 85 67.1
Glyma.17G046400 Glycine max HOM05D007531 ORTHO05D009484 6.2e-23 110.5 85 82.4
Phvul.003G128000 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 6.2e-23 110.5 85 74.1
VMungo1215G2546 Vigna mungo HOM05D007531 ORTHO05D009484 8.2e-23 110.2 104 67.3
Lj4g0024105 Lotus japonicus HOM05D007531 ORTHO05D009484 3.5e-18 94.7 82 62.2
TPR.G12718 Trifolium pratense HOM05D007531 ORTHO05D009484 5.7e-16 87.4 81 60.5
Medtr4g124770 Medicago truncatula HOM05D007531 ORTHO05D009484 1.3e-15 86.3 81 58.0
Psat0s2373g0160 Pisum sativum HOM05D007531 ORTHO05D009484 2.6e-13 78.6 51 76.5
arahy.Tifrunner.gnm1.ann1.ETL5CI Arachis hypogaea HOM05D007531 ORTHO05D009484 5.9e-13 77.4 81 51.9
arahy.Tifrunner.gnm1.ann1.J82KAY Arachis hypogaea HOM05D007531 ORTHO05D009484 7.7e-13 77.0 81 51.9
CSS0023587 Camellia sinensis var. sinensis HOM05D007531 ORTHO05D009484 3.8e-12 74.7 74 51.4
Duzib168G1872 Durio zibethinus HOM05D007531 ORTHO05D009484 3.8e-12 74.7 48 70.8
Thecc.09G071300 Theobroma cacao HOM05D007531 ORTHO05D009484 3.8e-12 74.7 48 70.8
Gohir.D08G267900 Gossypium hirsutum HOM05D007531 ORTHO05D009484 1.1e-11 73.2 48 68.8
Gorai.004G285500 Gossypium raimondii HOM05D007531 ORTHO05D009484 1.1e-11 73.2 48 68.8
Nitab4.5_0001699g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 1.1e-11 73.2 48 72.9
Gohir.A08G246700 Gossypium hirsutum HOM05D007531 ORTHO05D009484 2.5e-11 72.0 48 68.8
Nitab4.5_0007540g0040 Nicotiana tabacum HOM05D007531 ORTHO05D009484 4.2e-11 71.2 81 46.9
Rhsim05G0002900 Rhododendron simsii HOM05D007531 ORTHO05D009484 5.5e-11 70.9 48 62.5
ClCG11G000070 Citrullus lanatus HOM05D007531 ORTHO05D009484 9.4e-11 70.1 83 45.8
CsaV3_5G027570 Cucumis sativus L. HOM05D007531 ORTHO05D009484 9.4e-11 70.1 49 67.3
COL.COLO4_21218 Corchorus olitorius HOM05D007531 ORTHO05D009484 1.6e-10 69.3 47 68.1
DCAR_010491 Daucus carota HOM05D007531 ORTHO05D009484 1.6e-10 69.3 43 65.1
Dinv42427 Davidia involucrata HOM05D007531 ORTHO05D009484 1.6e-10 69.3 47 63.8
Lalb_Chr11g0074031 Lupinus albus HOM05D007531 ORTHO05D009484 1.6e-10 69.3 49 61.2
Manes.03G043400 Manihot esculenta HOM05D007531 ORTHO05D009484 1.6e-10 69.3 48 66.7
GSVIVG01015026001 Vitis vinifera HOM05D007531 ORTHO05D009484 2.1e-10 68.9 48 68.8
Duzib150G1567 Durio zibethinus HOM05D007531 ORTHO05D009484 2.7e-10 68.6 48 64.6
Potri.006G137401 Populus trichocarpa HOM05D007531 ORTHO05D009484 3.6e-10 68.2 48 64.6
Sc14g0000480 Simmondsia chinensis HOM05D007531 ORTHO05D009484 3.6e-10 68.2 48 64.6
Nitab4.5_0001092g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 4.6e-10 67.8 47 63.8
MD15G1222700 Malus domestica HOM05D007531 ORTHO05D009484 6.1e-10 67.4 47 66.0
PGR042G0735 Punica granatum HOM05D007531 ORTHO05D009484 7.9e-10 67.0 48 64.6
Solyc07g042450.3 Solanum lycopersicum HOM05D007531 ORTHO05D009484 7.9e-10 67.0 41 73.2
Sopen07g022090 Solanum pennellii HOM05D007531 ORTHO05D009484 7.9e-10 67.0 41 73.2
PGSC0003DMG400013576 Solanum tuberosum HOM05D007531 ORTHO05D009484 7.9e-10 67.0 41 73.2
TWI63G1700 Tripterygium wilfordii HOM05D007531 ORTHO05D009484 1.0e-09 66.6 48 62.5
Atru.chr7.1757 Acer truncatum HOM05D007531 ORTHO05D009484 1.4e-09 66.2 48 66.7
CAN.G660.22 Capsicum annuum HOM05D007531 ORTHO05D009484 1.4e-09 66.2 41 70.7
SalBow6G4078 Salvia bowleyana HOM05D007531 ORTHO05D009484 1.4e-09 66.2 41 68.3
CANSAT56G3767 Cannabis sativa HOM05D007531 ORTHO05D009484 2.3e-09 65.5 41 65.9
Prupe.7G193100 Prunus persica HOM05D007531 ORTHO05D009484 3.0e-09 65.1 80 46.2
EL10Ac8g18992 Beta vulgaris HOM05D007531 ORTHO05D009484 3.9e-09 64.7 49 61.2
Carub.0001s1884 Capsella rubella HOM05D007531 ORTHO05D009484 3.9e-09 64.7 48 62.5
Cfa002948 Carpinus fangiana HOM05D007531 ORTHO05D009484 3.9e-09 64.7 48 62.5
Oeu028116.1 Olea europaea HOM05D007531 ORTHO05D009484 3.9e-09 64.7 41 63.4
SGA_v2.0_scaffold296G47570 Striga asiatica HOM05D007531 ORTHO05D009484 3.9e-09 64.7 47 63.8
Manes.16G092000 Manihot esculenta HOM05D007531 ORTHO05D009484 6.7e-09 63.9 48 64.6
AT1G19240 Arabidopsis thaliana HOM05D007531 ORTHO05D009484 8.8e-09 63.5 48 60.4
QL11p002692 Quercus lobata HOM05D007531 ORTHO05D009484 8.8e-09 63.5 48 64.6
vmacro17085 Vaccinium macrocarpon HOM05D007531 ORTHO05D009484 8.8e-09 63.5 41 61.0
Aa31LG7G3950 Aethionema arabicum HOM05D007531 ORTHO05D009484 1.1e-08 63.2 47 61.7
Cpa.g.sc82.75 Carica papaya HOM05D007531 ORTHO05D009484 1.1e-08 63.2 46 63.0
RcHm_v2.0_Chr2g0095821 Rosa chinensis HOM05D007531 ORTHO05D009484 1.1e-08 63.2 47 61.7
Ciclev10010006m.g Citrus clementina HOM05D007531 ORTHO05D009484 1.9e-08 62.4 41 65.9
Dinv25515 Davidia involucrata HOM05D007531 ORTHO05D009484 1.9e-08 62.4 48 60.4
FvH4_1g09260 Fragaria vesca HOM05D007531 ORTHO05D009484 1.9e-08 62.4 39 66.7
FAN19G1112 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.9e-08 62.4 39 66.7
FAN26G1659 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.9e-08 62.4 39 66.7
FAN26G1806 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.9e-08 62.4 39 66.7
MSTRG.19432 Avicennia marina HOM05D007531 ORTHO05D009484 2.5e-08 62.0 45 62.2
Hma1.2p1_0519F.1_g171380 Hydrangea macrophylla HOM05D007531 ORTHO05D009484 2.5e-08 62.0 47 59.6
THA.LOC104809045 Tarenaya hassleriana HOM05D007531 ORTHO05D009484 2.5e-08 62.0 48 58.3
AL1G31820 Arabidopsis lyrata HOM05D007531 ORTHO05D009484 3.3e-08 61.6 47 59.6
Thhalv10009175m.g Eutrema salsugineum HOM05D007531 ORTHO05D009484 3.3e-08 61.6 47 59.6
Actinidia39623 Actinidia chinensis HOM05D007531 ORTHO05D009484 4.3e-08 61.2 41 63.4
Migut.L01591 Erythranthe guttata HOM05D007531 ORTHO05D009484 4.3e-08 61.2 39 64.1
FAN23G0531 Fragaria x ananassa HOM05D007531 ORTHO05D009484 4.3e-08 61.2 39 64.1
Lsat_1_v5_gn_7_35440 Lactuca sativa HOM05D007531 ORTHO05D009484 5.7e-08 60.8 47 55.3
TAR626G0337 Trochodendron aralioides HOM05D007531 ORTHO05D009484 7.4e-08 60.5 47 59.6
BcaB07g31940 Brassica carinata HOM05D007531 ORTHO05D009484 9.7e-08 60.1 47 59.6
BcaC07g38992 Brassica carinata HOM05D007531 ORTHO05D009484 9.7e-08 60.1 47 59.6
Peaxi162Scf00191g01018 Petunia axillaris HOM05D007531 ORTHO05D009484 9.7e-08 60.1 41 63.4
Sabra06G0107500 Salix brachista HOM05D007531 ORTHO05D009484 9.7e-08 60.1 41 61.0
ECA246G1013 Erigeron canadensis HOM05D007531 ORTHO05D009484 1.3e-07 59.7 82 40.2
CDE06G0851 Ceratophyllum demersum HOM05D007531 ORTHO05D009484 1.7e-07 59.3 47 61.7
Sp1g17150 Schrenkiella parvula HOM05D007531 ORTHO05D009484 1.7e-07 59.3 47 57.4
C05p17640 Brassica napus HOM05D007531 ORTHO05D009484 4.8e-07 57.8 39 64.1
BolC5t30467H Brassica oleracea HOM05D007531 ORTHO05D009484 4.8e-07 57.8 39 64.1
CARHR019840 Cardamine hirsuta HOM05D007531 ORTHO05D009484 4.8e-07 57.8 39 61.5
MBI19_g38003_MAGBIO Magnolia biondii HOM05D007531 ORTHO05D009484 4.8e-07 57.8 42 54.8
Eucgr.H05011 Eucalyptus grandis HOM05D007531 ORTHO05D009484 6.3e-07 57.4 48 56.2
A06p15390 Brassica napus HOM05D007531 ORTHO05D009484 1.1e-06 56.6 39 61.5
BraA06t24652Z Brassica rapa HOM05D007531 ORTHO05D009484 1.1e-06 56.6 39 61.5
Aqoxy7G04136 Aquilegia oxysepala HOM05D007531 ORTHO05D009484 1.8e-06 55.8 39 61.5
unitig_578.g16405 Utricularia gibba HOM05D007531 ORTHO05D009484 1.8e-06 55.8 48 56.2
Sed0019513 Sechium edule HOM05D007531 ORTHO05D009484 3.1e-06 55.1 37 64.9
HPP92_021129 Vanilla planifolia HOM05D007531 ORTHO05D009484 4.1e-06 54.7 44 54.5
HPP92_021130 Vanilla planifolia HOM05D007531 ORTHO05D009484 4.1e-06 54.7 44 54.5
Cc06_g12620 Coffea canephora HOM05D007531 ORTHO05D009484 5.3e-06 54.3 41 61.0


User provided reference genes

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