Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 6.7e-83 311.2 236 100.0
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 1.1e-72 277.3 236 84.7
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 1.9e-61 240.0 209 75.6
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 7.7e-47 191.4 250 62.4
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 5.5e-45 185.3 166 62.0
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 4.0e-43 179.1 154 67.5
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 1.7e-41 173.7 104 82.7
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 1.4e-40 170.6 106 73.6
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 7.0e-40 168.3 165 60.0
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 2.0e-39 166.8 106 72.6
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 2.9e-38 162.9 106 74.5
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 3.8e-38 162.5 130 63.1
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 1.1e-37 161.0 165 60.6
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 1.1e-37 161.0 87 85.1
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.5e-37 160.6 90 78.9
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.5e-37 160.6 90 78.9
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 1.9e-37 160.2 106 68.9
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 3.3e-37 159.5 127 59.8
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 4.3e-37 159.1 81 92.6
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 5.6e-37 158.7 114 72.8
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 7.2e-37 158.3 105 69.5
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 7.2e-37 158.3 106 73.6
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 9.5e-37 157.9 130 57.7
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 1.2e-36 157.5 167 59.3
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 1.6e-36 157.1 106 70.8
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 2.1e-36 156.8 104 68.3
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 2.1e-36 156.8 114 64.0
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 2.1e-36 156.8 90 74.4
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 3.6e-36 156.0 90 77.8
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 1.8e-35 153.7 106 66.0
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.8e-35 153.7 105 70.5
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 2.3e-35 153.3 90 75.6
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 4.0e-35 152.5 102 77.5
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 6.8e-35 151.8 90 75.6
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 4.4e-34 149.1 106 70.8
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 7.5e-34 148.3 90 74.4
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 7.5e-34 148.3 105 73.3
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 9.8e-34 147.9 90 76.7
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 2.2e-33 146.7 106 65.1
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 2.2e-33 146.7 106 65.1
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 3.7e-33 146.0 109 64.2
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 4.9e-33 145.6 105 66.7
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 7.0e-32 141.7 127 57.5
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 7.0e-32 141.7 105 64.8
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 9.2e-32 141.4 164 50.0
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.2e-31 141.0 105 64.8
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 1.2e-31 141.0 90 71.1
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 3.5e-31 139.4 90 71.1
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 4.6e-31 139.0 90 71.1
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 5.9e-31 138.7 126 57.9
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 5.9e-31 138.7 105 63.8
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 7.8e-31 138.3 101 66.3
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 1.0e-30 137.9 90 65.6
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 1.7e-30 137.1 91 71.4
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.3e-30 136.7 90 68.9
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 3.0e-30 136.3 90 65.6
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 3.9e-30 136.0 91 67.0
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 5.0e-30 135.6 90 70.0
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 6.6e-30 135.2 102 59.8
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 8.6e-30 134.8 90 68.9
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 1.9e-29 133.7 79 77.2
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 2.5e-29 133.3 89 73.0
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 2.5e-29 133.3 90 66.7
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 3.3e-29 132.9 89 67.4
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 3.3e-29 132.9 106 58.5
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 3.3e-29 132.9 102 63.7
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 4.3e-29 132.5 85 71.8
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 4.3e-29 132.5 103 63.1
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 7.3e-29 131.7 90 65.6
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 7.3e-29 131.7 87 72.4
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 7.3e-29 131.7 127 51.2
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 1.2e-28 131.0 102 61.8
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 1.6e-28 130.6 89 69.7
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 2.8e-28 129.8 90 67.8
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 2.8e-28 129.8 90 64.4
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 2.8e-28 129.8 90 64.4
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 2.8e-28 129.8 90 64.4
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 2.8e-28 129.8 77 77.9
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 8.0e-28 128.3 77 79.2
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 8.0e-28 128.3 77 77.9
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 1.0e-27 127.9 92 65.2
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 1.0e-27 127.9 92 65.2
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.0e-27 127.9 78 78.2
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.4e-27 127.5 91 65.9
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 5.2e-27 125.6 150 47.3
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 6.8e-27 125.2 85 64.7
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 1.2e-26 124.4 100 57.0
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 2.6e-26 123.2 77 71.4
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 1.3e-25 120.9 85 67.1
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 2.2e-25 120.2 75 76.0
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 4.9e-25 119.0 75 74.7
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 6.4e-25 118.6 92 60.9
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 6.4e-25 118.6 92 60.9
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 6.4e-25 118.6 102 58.8
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 1.4e-24 117.5 78 67.9
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 7.0e-24 115.2 78 69.2
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 4.6e-23 112.5 82 68.3
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 6.0e-23 112.1 85 65.9
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 7.8e-23 111.7 69 72.5
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 1.7e-22 110.5 84 64.3
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 2.5e-21 106.7 90 57.8
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 3.6e-20 102.8 90 53.3
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 1.4e-19 100.9 63 76.2
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 1.8e-19 100.5 91 60.4
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 2.3e-19 100.1 63 71.4
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 8.9e-19 98.2 82 62.2
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 8.9e-19 98.2 82 62.2
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 1.5e-18 97.4 90 55.6
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 3.4e-18 96.3 65 67.7
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 9.8e-18 94.7 63 73.0
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 1.7e-17 94.0 110 47.3
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.7e-17 94.0 77 55.8
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 2.2e-17 93.6 72 65.3
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 3.7e-17 92.8 90 47.8
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 6.4e-17 92.0 63 68.3
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 1.9e-16 90.5 90 52.2
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 3.2e-16 89.7 90 46.7
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 9.2e-16 88.2 65 64.6
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.6e-15 87.4 52 84.6
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 3.5e-15 86.3 82 46.3
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 4.6e-15 85.9 75 54.7
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 4.6e-15 85.9 77 58.4
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 1.1e-13 81.3 113 42.5
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 1.1e-13 81.3 69 58.0
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.9e-13 80.5 48 85.4
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 2.5e-13 80.1 49 81.6
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 3.3e-13 79.7 87 50.6
RcHm_v2.0_Chr6g0246681 Rosa chinensis HOM05D003803 ORTHO05D004456 3.3e-13 79.7 58 67.2
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 9.5e-13 78.2 88 45.5
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 1.2e-12 77.8 81 49.4
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 1.2e-12 77.8 50 78.0
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 1.6e-12 77.4 72 55.6
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 1.6e-12 77.4 102 43.1
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 2.8e-12 76.6 75 56.0
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 8.1e-12 75.1 48 77.1
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 3.1e-11 73.2 67 50.7
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 6.8e-11 72.0 89 43.8
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 1.2e-10 71.2 55 65.5
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 2.0e-10 70.5 47 78.7
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 2.6e-10 70.1 48 72.9
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 2.6e-10 70.1 57 59.6
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 3.4e-10 69.7 51 68.6
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 7.6e-10 68.6 94 44.7
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 9.9e-10 68.2 49 61.2
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 1.3e-09 67.8 89 42.7
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 4.9e-09 65.9 89 41.6
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 1.4e-08 64.3 61 55.7
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 2.4e-08 63.5 57 52.6
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 9.2e-08 61.6 43 72.1
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 1.2e-07 61.2 72 38.9
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 2.1e-07 60.5 57 50.9
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 3.5e-07 59.7 90 36.7
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 1.3e-06 57.8 48 68.8
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 3.0e-06 56.6 29 89.7
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 3.0e-06 56.6 39 71.8
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.0e-06 56.6 29 89.7
Lsat_1_v5_gn_5_140420 Lactuca sativa HOM05D003803 ORTHO05D004456 3.9e-06 56.2 25 76.0
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 5.1e-06 55.8 29 86.2
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 5.1e-06 55.8 30 83.3
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 6.6e-06 55.5 33 78.8
Thhalv10021823m.g Eutrema salsugineum HOM05D002369 ORTHO05D002435 8.6e-06 55.1 58 51.7


User provided reference genes

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