Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G110651 Glycine max HOM05D000069 ORTHO05D213825 1.5e-26 122.1 63 100.0
Glyma.17G049000 Glycine max HOM05D000069 ORTHO05D005129 2.6e-18 94.7 64 78.1
Phvul.003G130550 Phaseolus vulgaris HOM05D000069 ORTHO05D005129 3.2e-16 87.8 61 70.5
VMungo1215G1158 Vigna mungo HOM05D000069 ORTHO05D005129 1.3e-14 82.4 61 65.6
Medtr4g125300 Medicago truncatula HOM05D000069 ORTHO05D005129 1.1e-11 72.8 62 59.7
Ca_21324_v3 Cicer arietinum L. HOM05D000069 ORTHO05D005129 2.4e-11 71.6 62 58.1
Psat4g018080 Pisum sativum HOM05D000069 ORTHO05D005129 2.4e-11 71.6 62 58.1
Lj4g0001490 Lotus japonicus HOM05D000069 ORTHO05D005129 5.3e-11 70.5 63 58.7
TPR.G12591 Trifolium pratense HOM05D000069 ORTHO05D005129 1.5e-10 68.9 62 54.8
CiPaw.03G206000 Carya illinoinensis HOM05D000069 ORTHO05D005129 1.0e-09 66.2 62 54.8
CANSAT56G4367 Cannabis sativa HOM05D000069 ORTHO05D005129 2.2e-09 65.1 63 55.6
Manes.16G095100 Manihot esculenta HOM05D000069 ORTHO05D005129 2.9e-09 64.7 70 54.3
Cpa.g.sc28.31 Carica papaya HOM05D000069 ORTHO05D005129 5.0e-09 63.9 66 54.5
Nn8g38632 Nelumbo nucifera HOM05D000069 ORTHO05D005129 5.0e-09 63.9 70 51.4
Gohir.A06G076600 Gossypium hirsutum HOM05D000069 ORTHO05D005129 1.4e-08 62.4 66 51.5
Gohir.D06G075600 Gossypium hirsutum HOM05D000069 ORTHO05D005129 1.9e-08 62.0 66 51.5
Gorai.010G088500 Gossypium raimondii HOM05D000069 ORTHO05D005129 1.9e-08 62.0 66 51.5
PGR142G4027 Punica granatum HOM05D000069 ORTHO05D005129 2.5e-08 61.6 61 55.7
TAR636G0095 Trochodendron aralioides HOM05D000069 ORTHO05D005129 3.2e-08 61.2 48 62.5
Dinv42396 Davidia involucrata HOM05D000069 ORTHO05D005129 5.5e-08 60.5 66 53.0
QL11p000791 Quercus lobata HOM05D000069 ORTHO05D005129 1.2e-07 59.3 62 50.0
Cfa002985 Carpinus fangiana HOM05D000069 ORTHO05D005129 1.6e-07 58.9 65 50.8
Dinv25557 Davidia involucrata HOM05D000069 ORTHO05D005129 1.6e-07 58.9 64 48.4
Gorai.013G224100 Gossypium raimondii HOM05D000069 ORTHO05D005129 2.7e-07 58.2 66 47.0
Potri.006G141700 Populus trichocarpa HOM05D000069 ORTHO05D005129 2.7e-07 58.2 60 51.7
Ah.09g231630 Amaranthus hybridus HOM05D000069 ORTHO05D005129 3.6e-07 57.8 63 52.4
BraA02t05735Z Brassica rapa HOM05D000069 ORTHO05D005129 3.6e-07 57.8 63 44.4
MD15G1217900 Malus domestica HOM05D000069 ORTHO05D005129 3.6e-07 57.8 69 50.7
Gohir.A13G190600 Gossypium hirsutum HOM05D000069 ORTHO05D005129 4.6e-07 57.4 66 47.0
Sp6g21960 Schrenkiella parvula HOM05D000069 ORTHO05D005129 6.1e-07 57.0 63 44.4
TAR624G1160 Trochodendron aralioides HOM05D000069 ORTHO05D005129 6.1e-07 57.0 48 58.3
Ciclev10008748m.g Citrus clementina HOM05D000069 ORTHO05D005129 7.9e-07 56.6 44 63.6
Gohir.D13G196365 Gossypium hirsutum HOM05D000069 ORTHO05D005129 7.9e-07 56.6 66 45.5
Sed0002748 Sechium edule HOM05D000069 ORTHO05D005129 7.9e-07 56.6 64 46.9
Hund08782 Selenicereus undatus HOM05D000069 ORTHO05D005129 7.9e-07 56.6 64 50.0
arahy.Tifrunner.gnm1.ann1.AJY7W8 Arachis hypogaea HOM05D000069 ORTHO05D005129 1.0e-06 56.2 47 61.7
Gohir.D05G035400 Gossypium hirsutum HOM05D000069 ORTHO05D005129 1.0e-06 56.2 63 49.2
Gorai.009G036000 Gossypium raimondii HOM05D000069 ORTHO05D005129 1.0e-06 56.2 63 49.2
EL10Ac8g19055 Beta vulgaris HOM05D000069 ORTHO05D005129 1.4e-06 55.8 65 49.2
Carub.0008s2106 Capsella rubella HOM05D000069 ORTHO05D005129 1.4e-06 55.8 63 46.0
ClCG03G015060 Citrullus lanatus HOM05D000069 ORTHO05D005129 1.4e-06 55.8 64 46.9
Haze_26016 Corylus avellana HOM05D000069 ORTHO05D005129 1.4e-06 55.8 46 58.7
Thecc.09G076500 Theobroma cacao HOM05D000069 ORTHO05D005129 1.4e-06 55.8 65 47.7
Thhalv10013934m.g Eutrema salsugineum HOM05D000069 ORTHO05D005129 1.8e-06 55.5 63 42.9
Manes.03G040700 Manihot esculenta HOM05D000069 ORTHO05D005129 1.8e-06 55.5 55 50.9
Aa31LG1G12410 Aethionema arabicum HOM05D000069 ORTHO05D005129 2.3e-06 55.1 66 47.0
AT5G60360 Arabidopsis thaliana HOM05D000069 ORTHO05D005129 2.3e-06 55.1 63 44.4
C02p11790 Brassica napus HOM05D000069 ORTHO05D005129 2.3e-06 55.1 62 43.5
Lalb_Chr13g0299441 Lupinus albus HOM05D000069 ORTHO05D005129 2.3e-06 55.1 47 57.4
Atru.chr7.1711 Acer truncatum HOM05D000069 ORTHO05D005129 3.0e-06 54.7 70 47.1
Actinidia30223 Actinidia chinensis HOM05D000069 ORTHO05D005129 3.0e-06 54.7 62 48.4
BcaB05g22636 Brassica carinata HOM05D000069 ORTHO05D005129 3.0e-06 54.7 63 42.9
Eucgr.C00803 Eucalyptus grandis HOM05D000069 ORTHO05D005129 3.0e-06 54.7 70 42.9
MD02G1091800 Malus domestica HOM05D000069 ORTHO05D005129 3.0e-06 54.7 69 46.4
BolC2t07274H Brassica oleracea HOM05D000069 ORTHO05D005129 3.9e-06 54.3 63 41.3
Sabra06G0110800 Salix brachista HOM05D000069 ORTHO05D005129 3.9e-06 54.3 68 45.6
Gohir.A05G034000 Gossypium hirsutum HOM05D000069 ORTHO05D005129 5.1e-06 53.9 63 47.6
Lj4C913T13 Lonicera japonica HOM05D000069 ORTHO05D005129 5.1e-06 53.9 63 52.4
PSO724G0413 Papaver somniferum HOM05D000069 ORTHO05D005129 5.1e-06 53.9 62 46.8
A10p17590 Brassica napus HOM05D000069 ORTHO05D005129 6.7e-06 53.5 63 41.3
VMungo1309G0480 Vigna mungo HOM05D000069 ORTHO05D005129 6.7e-06 53.5 55 52.7
BcaB08g36338 Brassica carinata HOM05D000280 ORTHO05D000632 8.8e-06 53.1 54 46.3
BcaC04g19697 Brassica carinata HOM05D000069 ORTHO05D005129 8.8e-06 53.1 59 42.4
BolC9t58172H Brassica oleracea HOM05D000069 ORTHO05D005129 8.8e-06 53.1 59 42.4
Lalb_Chr12g0200171 Lupinus albus HOM05D000069 ORTHO05D005129 8.8e-06 53.1 64 46.9
Oeu035913.1 Olea europaea HOM05D000069 ORTHO05D005129 8.8e-06 53.1 67 46.3
RcHm_v2.0_Chr2g0095151 Rosa chinensis HOM05D000069 ORTHO05D005129 8.8e-06 53.1 64 45.3


User provided reference genes

Program Settings