Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G101600 Glycine max HOM05D005890 ORTHO05D006717 2.3e-186 655.6 373 100.0
Glyma.17G058000 Glycine max HOM05D005890 ORTHO05D006717 3.0e-138 495.7 350 82.6
VMungo1215G0729 Vigna mungo HOM05D005890 ORTHO05D006717 2.1e-123 446.4 381 73.2
Phvul.003G140452 Phaseolus vulgaris HOM05D005890 ORTHO05D006717 1.7e-112 410.2 418 63.4
Lj4g0027857 Lotus japonicus HOM05D005890 ORTHO05D006717 7.8e-102 374.8 390 60.8
Medtr4g127160 Medicago truncatula HOM05D005890 ORTHO05D006717 9.2e-95 351.3 425 55.3
arahy.Tifrunner.gnm1.ann1.CB00ZF Arachis hypogaea HOM05D005890 ORTHO05D006717 2.5e-84 316.6 406 56.2
arahy.Tifrunner.gnm1.ann1.V3N0NP Arachis hypogaea HOM05D005890 ORTHO05D006717 6.2e-83 312.0 405 56.0
Lalb_Chr13g0299851 Lupinus albus HOM05D005890 ORTHO05D006717 6.9e-82 308.5 398 54.8
Ca_21262_v3 Cicer arietinum L. HOM05D005890 ORTHO05D006717 3.0e-69 266.5 376 49.2
TPR.G5393 Trifolium pratense HOM05D005890 ORTHO05D006717 8.7e-69 265.0 435 50.6
FAN17G2561 Fragaria x ananassa HOM05D005890 ORTHO05D006717 1.5e-57 227.6 393 44.0
MD16G1246300 Malus domestica HOM05D005890 ORTHO05D006717 1.3e-56 224.6 448 40.2
FAN07G1770 Fragaria x ananassa HOM05D005890 ORTHO05D006717 3.8e-56 223.0 393 43.5
FAN12G2329 Fragaria x ananassa HOM05D005890 ORTHO05D006717 7.1e-55 218.8 393 42.5
Thecc.09G191500 Theobroma cacao HOM05D005890 ORTHO05D006717 3.0e-53 213.4 473 38.1
Manes.06G017800 Manihot esculenta HOM05D005890 ORTHO05D006717 2.2e-51 207.2 460 40.2
CANSAT01G0113 Cannabis sativa HOM05D005890 ORTHO05D006717 1.4e-50 204.5 418 43.3
ClCG06G013720 Citrullus lanatus HOM05D005890 ORTHO05D006717 5.3e-50 202.6 437 37.8
PGR044G2166 Punica granatum HOM05D005890 ORTHO05D006717 1.5e-49 201.1 468 38.5
QL07p048247 Quercus lobata HOM05D005890 ORTHO05D006717 2.6e-49 200.3 481 36.0
Peaxi162Scf00046g00417 Petunia axillaris HOM05D005890 ORTHO05D006717 7.7e-49 198.7 403 42.2
Nitab4.5_0000028g0410 Nicotiana tabacum HOM05D005890 ORTHO05D006717 1.0e-48 198.4 373 42.1
CsaV3_3G012070 Cucumis sativus L. HOM05D005890 ORTHO05D006717 1.3e-48 198.0 434 37.1
GSVIVG01029286001 Vitis vinifera HOM05D005890 ORTHO05D006717 2.9e-48 196.8 456 36.6
CiPaw.07G198700 Carya illinoinensis HOM05D005890 ORTHO05D006717 3.8e-48 196.4 417 37.6
Duzib170G1164 Durio zibethinus HOM05D005890 ORTHO05D006717 5.0e-48 196.1 515 38.1
Gorai.012G008900 Gossypium raimondii HOM05D005890 ORTHO05D006717 8.5e-48 195.3 428 41.6
Potri.018G140200 Populus trichocarpa HOM05D005890 ORTHO05D006717 1.4e-47 194.5 475 38.1
Eucgr.C02214 Eucalyptus grandis HOM05D005890 ORTHO05D006717 3.2e-47 193.4 468 35.5
Prupe.1G073000 Prunus persica HOM05D005890 ORTHO05D006717 3.2e-47 193.4 446 39.9
MELO3C006422.2 Cucumis melo HOM05D005890 ORTHO05D006717 5.5e-47 192.6 436 37.6
Cfa013466 Carpinus fangiana HOM05D005890 ORTHO05D006717 7.2e-47 192.2 484 36.0
Sp6g18850 Schrenkiella parvula HOM05D005890 ORTHO05D006717 1.2e-46 191.4 387 39.3
Potri.006G073100 Populus trichocarpa HOM05D005890 ORTHO05D006717 1.6e-46 191.0 501 35.5
Atru.BG.17.p Acer truncatum HOM05D005890 ORTHO05D006717 2.7e-46 190.3 380 44.2
Thhalv10013871m.g Eutrema salsugineum HOM05D005890 ORTHO05D006717 3.6e-46 189.9 387 42.4
Gohir.A05G408300 Gossypium hirsutum HOM05D005890 ORTHO05D006717 4.6e-46 189.5 428 40.2
Sed0014693 Sechium edule HOM05D005890 ORTHO05D006717 4.6e-46 189.5 427 37.9
Hma1.2p1_0235F.1_g098760 Hydrangea macrophylla HOM05D005890 ORTHO05D006717 3.9e-45 186.4 471 34.8
BcaB05g22318 Brassica carinata HOM05D005890 ORTHO05D006717 8.8e-45 185.3 372 40.3
Dinv41195 Davidia involucrata HOM05D005890 ORTHO05D006717 1.1e-44 184.9 586 32.3
Psat4g014480 Pisum sativum HOM05D005890 ORTHO05D006717 1.9e-44 184.1 298 46.0
RcHm_v2.0_Chr4g0398981 Rosa chinensis HOM05D005890 ORTHO05D006717 4.3e-44 183.0 445 36.2
Rhsim01G0114500 Rhododendron simsii HOM05D005890 ORTHO05D006717 7.4e-44 182.2 508 33.9
Sabra06G0054500 Salix brachista HOM05D005890 ORTHO05D006717 3.7e-43 179.9 468 36.5
THA.LOC104813501 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 1.4e-42 177.9 401 40.4
Ah.14g085350 Amaranthus hybridus HOM05D005890 ORTHO05D006717 1.8e-42 177.6 393 38.4
THA.LOC104817770 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 1.8e-42 177.6 417 40.3
TWI32G1283 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 1.8e-42 177.6 490 34.9
Cc03_g15250 Coffea canephora HOM05D005890 ORTHO05D006717 3.1e-42 176.8 495 35.4
MSTRG.26556 Avicennia marina HOM05D005890 ORTHO05D006717 4.1e-42 176.4 466 35.6
DCAR_018014 Daucus carota HOM05D005890 ORTHO05D006717 4.1e-42 176.4 422 37.2
Migut.L01872 Erythranthe guttata HOM05D005890 ORTHO05D006717 9.1e-42 175.3 388 37.6
Ciclev10008727m.g Citrus clementina HOM05D005890 ORTHO05D006717 3.4e-41 173.3 263 48.3
SGA_v2.0_scaffold41G15805 Striga asiatica HOM05D005890 ORTHO05D006717 4.5e-41 172.9 474 34.2
BcaC03g14182 Brassica carinata HOM05D005890 ORTHO05D006717 7.7e-41 172.2 396 38.6
A02p08710 Brassica napus HOM05D005890 ORTHO05D006717 7.7e-41 172.2 390 41.5
C02p14590 Brassica napus HOM05D005890 ORTHO05D006717 7.7e-41 172.2 396 38.6
BolC2t07586H Brassica oleracea HOM05D005890 ORTHO05D006717 7.7e-41 172.2 396 38.6
AUR62027422 Chenopodium quinoa HOM05D005890 ORTHO05D006717 1.0e-40 171.8 417 40.5
AUR62031274 Chenopodium quinoa HOM05D005890 ORTHO05D006717 1.0e-40 171.8 386 36.5
TWI34G1560 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 3.8e-40 169.9 410 37.1
HanXRQChr03g0065401 Helianthus annuus HOM05D005890 ORTHO05D006717 5.0e-40 169.5 413 35.8
EL10Ac8g19296 Beta vulgaris HOM05D005890 ORTHO05D006717 6.5e-40 169.1 428 35.7
Nitab4.5_0004916g0020 Nicotiana tabacum HOM05D005890 ORTHO05D006717 1.1e-39 168.3 384 40.9
Dinv25461 Davidia involucrata HOM05D005890 ORTHO05D006717 1.9e-39 167.5 534 31.6
Sed0024384 Sechium edule HOM05D005890 ORTHO05D006717 1.9e-39 167.5 404 34.9
Aa31LG3G13020 Aethionema arabicum HOM05D005890 ORTHO05D006717 3.2e-39 166.8 388 40.5
Oeu063100.1 Olea europaea HOM05D005890 ORTHO05D006717 3.2e-39 166.8 157 65.0
CARHR270890 Cardamine hirsuta HOM05D005890 ORTHO05D006717 7.2e-39 165.6 376 36.7
BraA02t05941Z Brassica rapa HOM05D005890 ORTHO05D006717 9.4e-39 165.2 391 38.1
HanXRQChr10g0308981 Helianthus annuus HOM05D005890 ORTHO05D006717 9.4e-39 165.2 334 41.0
CAN.G403.1 Capsicum annuum HOM05D005890 ORTHO05D006717 1.2e-38 164.9 373 38.1
unitig_8.g3553 Utricularia gibba HOM05D005890 ORTHO05D006717 1.6e-38 164.5 398 34.4
CSS0049336 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 3.0e-37 160.2 286 42.0
PGSC0003DMG400019897 Solanum tuberosum HOM05D005890 ORTHO05D006717 3.0e-37 160.2 403 38.2
Actinidia02494 Actinidia chinensis HOM05D005890 ORTHO05D006717 1.1e-36 158.3 484 33.1
Sopen07g004220 Solanum pennellii HOM05D005890 ORTHO05D006717 3.3e-36 156.8 396 38.9
Nn8g40670 Nelumbo nucifera HOM05D005890 ORTHO05D006717 5.7e-36 156.0 591 29.8
Atru.chr7.926 Acer truncatum HOM05D005890 ORTHO05D006717 7.4e-36 155.6 190 53.7
BolC9t57729H Brassica oleracea HOM05D005890 ORTHO05D006717 1.3e-35 154.8 359 37.6
BcaC04g20011 Brassica carinata HOM05D005890 ORTHO05D006717 1.7e-35 154.5 356 37.4
C09p48820 Brassica napus HOM05D005890 ORTHO05D006717 2.8e-35 153.7 359 37.6
Solyc07g008330.3 Solanum lycopersicum HOM05D005890 ORTHO05D006717 8.2e-35 152.1 394 38.6
Aqoxy7G02888 Aquilegia oxysepala HOM05D005890 ORTHO05D006717 1.8e-34 151.0 441 34.7
Lsat_1_v5_gn_5_83860 Lactuca sativa HOM05D005890 ORTHO05D006717 1.2e-33 148.3 343 40.2
CDE02G0471 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 1.5e-33 147.9 429 32.9
BcaB08g36002 Brassica carinata HOM05D005890 ORTHO05D006717 4.5e-33 146.4 332 38.3
ECA234G0353 Erigeron canadensis HOM05D005890 ORTHO05D006717 4.5e-33 146.4 365 37.8
Cpa.g.sc115.65 Carica papaya HOM05D005890 ORTHO05D006717 1.3e-32 144.8 162 54.9
SGA_v2.0_scaffold392G50652 Striga asiatica HOM05D005890 ORTHO05D006717 1.7e-32 144.4 280 40.4
vmacro20806 Vaccinium macrocarpon HOM05D005890 ORTHO05D006717 1.7e-32 144.4 371 38.8
ECA240G0208 Erigeron canadensis HOM05D005890 ORTHO05D006717 5.0e-32 142.9 234 42.3
CDE05G3513 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 3.2e-31 140.2 422 33.9
PSO063G0609 Papaver somniferum HOM05D005890 ORTHO05D006717 3.2e-31 140.2 441 33.8
Hund24378 Selenicereus undatus HOM05D005890 ORTHO05D006717 7.2e-31 139.0 452 33.8
Lsat_1_v5_gn_7_55781 Lactuca sativa HOM05D005890 ORTHO05D006717 9.4e-31 138.7 442 31.2
Os12g0613500 Oryza sativa ssp. japonica HOM05D005890 ORTHO05D006717 9.4e-31 138.7 399 35.6
TAR637G0001 Trochodendron aralioides HOM05D005890 ORTHO05D006717 1.6e-30 137.9 80 80.0
ATR1098G092 Amborella trichopoda HOM05D005890 ORTHO05D006717 2.1e-30 137.5 176 48.9
COL.COLO4_08570 Corchorus olitorius HOM05D005890 ORTHO05D006717 2.1e-30 137.5 561 30.5
MBI14_g15782_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 2.7e-30 137.1 181 50.8
SEGI_20539 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 3.0e-29 133.7 158 51.3
Zm00001eb136110 Zea mays HOM05D005890 ORTHO05D006717 1.1e-28 131.7 191 48.2
HPP92_018699 Vanilla planifolia HOM05D005890 ORTHO05D006717 3.3e-28 130.2 193 46.1
FvH4_4g06950 Fragaria vesca HOM05D005890 ORTHO05D006717 5.3e-26 122.9 337 34.7
Pp3c3_34440 Physcomitrium patens HOM05D005890 ORTHO05D006717 5.3e-26 122.9 138 53.6
Pp3c3_34441 Physcomitrium patens HOM05D005890 ORTHO05D006717 5.3e-26 122.9 138 53.6
AT5G57120 Arabidopsis thaliana HOM05D005890 ORTHO05D006717 2.6e-25 120.6 342 37.4
AL8G33040 Arabidopsis lyrata HOM05D005890 ORTHO05D006717 5.9e-25 119.4 343 36.4
PSO170G0082 Papaver somniferum HOM05D005890 ORTHO05D006717 1.3e-24 118.2 413 32.2
MD13G1240600 Malus domestica HOM05D005890 ORTHO05D006717 2.9e-24 117.1 385 33.2
Mapoly0009s0141 Marchantia polymorpha HOM05D005890 ORTHO05D006717 1.6e-22 111.3 151 45.0
MBI18_g10586_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 5.2e-21 106.3 516 27.3
SEGI_22268 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 8.8e-21 105.5 62 79.0
CBR_g20282 Chara braunii HOM05D000019 ORTHO05D000002 2.6e-20 104.0 76 63.2
Gohir.D04G007200 Gossypium hirsutum HOM05D005890 ORTHO05D006717 3.3e-20 103.6 363 33.9
Zm00001eb172010 Zea mays HOM05D005890 ORTHO05D006717 9.7e-20 102.1 185 41.1
AagrBONN_evm.TU.Sc2ySwM_368.973 Anthoceros agrestis HOM05D005890 ORTHO05D006717 3.1e-18 97.1 240 34.2
Carub.0008s1762 Capsella rubella HOM05D005890 ORTHO05D006717 3.1e-18 97.1 333 35.4
Haze_22044 Corylus avellana HOM05D005890 ORTHO05D006717 5.3e-18 96.3 224 38.4
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 5.3e-18 96.3 131 48.9
CSS0049604 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 1.4e-13 81.6 282 30.9
Sabra18G0114500 Salix brachista HOM05D005890 ORTHO05D006717 3.4e-12 77.0 424 30.4
CiPaw.08G031700 Carya illinoinensis HOM05D005890 ORTHO05D006717 2.8e-11 73.9 116 40.5
Zm00001eb394450 Zea mays HOM05D014690 ORTHO05D006717 1.1e-10 72.0 55 63.6
Cpa.g.c33129.1 Carica papaya HOM05D005890 ORTHO05D006717 5.4e-10 69.7 99 48.5
A10p14440 Brassica napus HOM05D005890 ORTHO05D006717 1.7e-08 64.7 35 82.9
BraA10t43535Z Brassica rapa HOM05D005890 ORTHO05D006717 1.7e-08 64.7 35 82.9
Cre01.g055400 Chlamydomonas reinhardtii HOM05D005890 ORTHO05D006717 5.0e-08 63.2 99 45.5
MCO09G065 Micromonas commoda HOM05D005890 ORTHO05D006717 1.9e-07 61.2 80 48.8


User provided reference genes

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