Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G099400 Glycine max HOM05D004681 ORTHO05D005541 1.1e-173 613.2 321 100.0
Glyma.17G060700 Glycine max HOM05D004681 ORTHO05D005541 9.2e-160 567.0 322 93.5
Phvul.003G142900 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 2.1e-148 529.3 321 82.6
VMungo1215G0406 Vigna mungo HOM05D004681 ORTHO05D005541 9.9e-146 520.4 321 80.4
Lj4g0016729 Lotus japonicus HOM05D004681 ORTHO05D005541 3.9e-134 481.9 323 80.5
arahy.Tifrunner.gnm1.ann1.L4KBSE Arachis hypogaea HOM05D004681 ORTHO05D005541 5.1e-134 481.5 325 78.2
arahy.Tifrunner.gnm1.ann1.K04ERL Arachis hypogaea HOM05D004681 ORTHO05D005541 6.2e-132 474.6 325 77.8
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 8.7e-126 454.1 317 76.7
Lalb_Chr12g0199511 Lupinus albus HOM05D004681 ORTHO05D005541 3.3e-125 452.2 324 74.7
Glyma.15G164000 Glycine max HOM05D004681 ORTHO05D005541 4.5e-122 441.8 313 70.3
Medtr4g127630 Medicago truncatula HOM05D004681 ORTHO05D005541 2.2e-121 439.5 314 73.2
Lj6g0005497 Lotus japonicus HOM05D004681 ORTHO05D005541 1.4e-120 436.8 313 73.2
Phvul.009G237800 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 1.4e-120 436.8 323 74.6
TPR.G5388 Trifolium pratense HOM05D004681 ORTHO05D005541 2.5e-120 436.0 321 72.6
arahy.Tifrunner.gnm1.ann1.KM341F Arachis hypogaea HOM05D004681 ORTHO05D005541 6.0e-119 431.4 322 72.0
Glyma.09G057900 Glycine max HOM05D004681 ORTHO05D005541 6.7e-118 427.9 319 69.0
Psat0s736g0040 Pisum sativum HOM05D004681 ORTHO05D005541 6.7e-118 427.9 320 69.4
VMungo1309G2393 Vigna mungo HOM05D004681 ORTHO05D005541 1.9e-117 426.4 325 72.0
arahy.Tifrunner.gnm1.ann1.LX7F61 Arachis hypogaea HOM05D004681 ORTHO05D005541 1.6e-116 423.3 322 72.0
Lalb_Chr15g0084091 Lupinus albus HOM05D004681 ORTHO05D005541 6.2e-116 421.4 319 69.0
Medtr2g036910 Medicago truncatula HOM05D004681 ORTHO05D005541 1.6e-111 406.8 321 72.3
Ca_02042_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 6.3e-108 394.8 321 70.7
TPR.G9028 Trifolium pratense HOM05D004681 ORTHO05D005541 3.8e-105 385.6 323 70.3
QL12p032381 Quercus lobata HOM05D004681 ORTHO05D005541 7.2e-104 381.3 318 61.0
Cfa013431 Carpinus fangiana HOM05D004681 ORTHO05D005541 6.1e-103 378.3 322 61.2
CANSAT11G1051 Cannabis sativa HOM05D004681 ORTHO05D005541 3.8e-97 359.0 318 62.6
ClCG06G013520 Citrullus lanatus HOM05D004681 ORTHO05D005541 5.0e-97 358.6 319 60.2
CiPaw.07G195100 Carya illinoinensis HOM05D004681 ORTHO05D005541 1.4e-96 357.1 319 57.4
Prupe.1G079200 Prunus persica HOM05D004681 ORTHO05D005541 3.2e-96 355.9 312 57.7
Actinidia06358 Actinidia chinensis HOM05D004681 ORTHO05D005541 9.4e-96 354.4 319 58.6
Atru.chr7.819 Acer truncatum HOM05D004681 ORTHO05D005541 1.6e-95 353.6 322 57.8
Gohir.D08G028500 Gossypium hirsutum HOM05D004681 ORTHO05D005541 1.8e-94 350.1 322 56.2
Dinv25404 Davidia involucrata HOM05D004681 ORTHO05D005541 3.0e-94 349.4 325 55.1
Gohir.A08G017900 Gossypium hirsutum HOM05D004681 ORTHO05D005541 3.9e-94 349.0 322 56.2
RcHm_v2.0_Chr4g0400191 Rosa chinensis HOM05D004681 ORTHO05D005541 3.9e-94 349.0 320 59.1
Solyc07g009320.3 Solanum lycopersicum HOM05D004681 ORTHO05D005541 5.1e-94 348.6 317 57.1
Sopen07g005070 Solanum pennellii HOM05D004681 ORTHO05D005541 8.8e-94 347.8 317 57.1
GSVIVG01010902001 Vitis vinifera HOM05D004681 ORTHO05D005541 1.5e-93 347.1 318 56.3
Cpa.g.sc95.29 Carica papaya HOM05D004681 ORTHO05D005541 2.6e-93 346.3 312 57.1
TWI63G0533 Tripterygium wilfordii HOM05D004681 ORTHO05D005541 4.4e-93 345.5 315 58.7
MD13G1245600 Malus domestica HOM05D004681 ORTHO05D005541 1.7e-92 343.6 315 58.7
MELO3C017439.2 Cucumis melo HOM05D004681 ORTHO05D005541 2.8e-92 342.8 323 58.2
Gorai.004G025600 Gossypium raimondii HOM05D004681 ORTHO05D005541 6.3e-92 341.7 333 54.4
PGSC0003DMG400008514 Solanum tuberosum HOM05D004681 ORTHO05D005541 6.3e-92 341.7 317 56.5
Actinidia22469 Actinidia chinensis HOM05D004681 ORTHO05D005541 8.2e-92 341.3 314 56.1
Cc06_g22600 Coffea canephora HOM05D004681 ORTHO05D005541 8.2e-92 341.3 318 59.4
Thecc.09G181200 Theobroma cacao HOM05D004681 ORTHO05D005541 8.2e-92 341.3 322 55.6
Ciclev10008916m.g Citrus clementina HOM05D004681 ORTHO05D005541 3.1e-91 339.3 317 56.5
Duzib168G0714 Durio zibethinus HOM05D004681 ORTHO05D005541 3.1e-91 339.3 311 56.6
Duzib170G0205 Durio zibethinus HOM05D004681 ORTHO05D005541 5.3e-91 338.6 322 55.3
CiPaw.08G033800 Carya illinoinensis HOM05D004681 ORTHO05D005541 7.0e-91 338.2 311 57.6
SalBow7G3904 Salvia bowleyana HOM05D004681 ORTHO05D005541 9.1e-91 337.8 319 53.6
CAN.G1668.9 Capsicum annuum HOM05D004681 ORTHO05D005541 1.7e-89 333.6 317 55.2
Eucgr.C00132 Eucalyptus grandis HOM05D004681 ORTHO05D005541 2.2e-89 333.2 313 54.6
SGA_v2.0_scaffold41G15864 Striga asiatica HOM05D004681 ORTHO05D005541 2.2e-89 333.2 315 53.3
CsaV3_1G031790 Cucumis sativus L. HOM05D004681 ORTHO05D005541 1.1e-88 330.9 323 58.8
Potri.006G077100 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.1e-88 330.9 316 60.4
MSTRG.10452 Avicennia marina HOM05D004681 ORTHO05D005541 1.4e-88 330.5 317 52.7
Manes.04G060300 Manihot esculenta HOM05D004681 ORTHO05D005541 2.5e-88 329.7 318 56.3
Manes.14G161401 Manihot esculenta HOM05D004681 ORTHO05D005541 2.5e-88 329.7 318 56.6
Psat1g145840 Pisum sativum HOM05D004681 ORTHO05D005541 4.2e-88 328.9 205 77.1
FAN17G0253 Fragaria x ananassa HOM05D004681 ORTHO05D005541 7.2e-88 328.2 322 56.8
FAN22G1928 Fragaria x ananassa HOM05D004681 ORTHO05D005541 7.2e-88 328.2 323 54.5
FAN12G2798 Fragaria x ananassa HOM05D004681 ORTHO05D005541 1.6e-87 327.0 323 54.2
Dinv26443 Davidia involucrata HOM05D004681 ORTHO05D005541 2.1e-87 326.6 300 56.7
FvH4_4g07590 Fragaria vesca HOM05D004681 ORTHO05D005541 4.7e-87 325.5 323 54.2
BcaB03g16704 Brassica carinata HOM05D004681 ORTHO05D005541 6.1e-87 325.1 308 53.6
Nitab4.5_0010281g0010 Nicotiana tabacum HOM05D004681 ORTHO05D005541 8.0e-87 324.7 309 55.7
PGR044G2653 Punica granatum HOM05D004681 ORTHO05D005541 1.0e-86 324.3 318 54.1
Rhsim13G0200500 Rhododendron simsii HOM05D004681 ORTHO05D005541 1.0e-86 324.3 370 48.9
Aqoxy7G02735 Aquilegia oxysepala HOM05D004681 ORTHO05D005541 1.4e-86 323.9 323 52.6
Peaxi162Scf00324g00718 Petunia axillaris HOM05D004681 ORTHO05D005541 3.9e-86 322.4 317 52.1
CSS0025965 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 5.2e-86 322.0 321 58.9
RcHm_v2.0_Chr7g0191541 Rosa chinensis HOM05D004681 ORTHO05D005541 6.7e-86 321.6 318 52.8
SalBow7G0268 Salvia bowleyana HOM05D004681 ORTHO05D005541 1.1e-85 320.9 337 50.1
ECA232G3088 Erigeron canadensis HOM05D004681 ORTHO05D005541 5.7e-85 318.5 324 54.3
BcaB07g31622 Brassica carinata HOM05D004681 ORTHO05D005541 7.4e-85 318.2 308 51.9
THA.LOC104819968 Tarenaya hassleriana HOM05D004681 ORTHO05D005541 7.4e-85 318.2 309 57.9
Migut.L01897 Erythranthe guttata HOM05D004681 ORTHO05D005541 4.8e-84 315.5 316 55.1
BcaC04g22869 Brassica carinata HOM05D004681 ORTHO05D005541 1.1e-83 314.3 308 51.0
Oeu000976.1 Olea europaea HOM05D004681 ORTHO05D005541 1.1e-83 314.3 308 52.3
Thhalv10022785m.g Eutrema salsugineum HOM05D004681 ORTHO05D005541 1.8e-83 313.5 308 52.6
Sabra06G0058400 Salix brachista HOM05D004681 ORTHO05D005541 1.8e-83 313.5 340 55.0
AL3G52840 Arabidopsis lyrata HOM05D004681 ORTHO05D005541 2.4e-83 313.2 311 50.8
Sc14g0001370 Simmondsia chinensis HOM05D004681 ORTHO05D005541 5.3e-83 312.0 321 49.8
SGA_v2.0_scaffold21G09637 Striga asiatica HOM05D004681 ORTHO05D005541 7.0e-83 311.6 314 50.0
PSO079G0045 Papaver somniferum HOM05D004681 ORTHO05D005541 9.1e-83 311.2 324 52.8
BcaC06g36518 Brassica carinata HOM05D004681 ORTHO05D005541 2.0e-82 310.1 308 52.6
HanXRQChr09g0266261 Helianthus annuus HOM05D004681 ORTHO05D005541 2.6e-82 309.7 324 50.6
BolC9t54347H Brassica oleracea HOM05D004681 ORTHO05D005541 4.5e-82 308.9 309 50.8
PSO423G0181 Papaver somniferum HOM05D004681 ORTHO05D005541 4.5e-82 308.9 324 51.9
Sp3g32480 Schrenkiella parvula HOM05D004681 ORTHO05D005541 4.5e-82 308.9 308 50.0
BraA09t36865Z Brassica rapa HOM05D004681 ORTHO05D005541 5.9e-82 308.5 308 50.3
A09p12190 Brassica napus HOM05D004681 ORTHO05D005541 1.0e-81 307.8 308 50.3
MBI13_g31546_MAGBIO Magnolia biondii HOM05D004681 ORTHO05D005541 1.3e-81 307.4 327 52.3
Carub.0003s3332 Capsella rubella HOM05D004681 ORTHO05D005541 1.7e-81 307.0 311 50.5
CSS0001946 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 2.9e-81 306.2 235 63.0
Ah.09g230170 Amaranthus hybridus HOM05D004681 ORTHO05D005541 5.0e-81 305.4 322 49.4
Aa31LG8G16140 Aethionema arabicum HOM05D004681 ORTHO05D005541 1.1e-80 304.3 308 51.9
C09p14440 Brassica napus HOM05D004681 ORTHO05D005541 1.1e-80 304.3 308 49.7
Sed0004411 Sechium edule HOM05D004681 ORTHO05D005541 1.1e-80 304.3 251 59.4
AT2G19080 Arabidopsis thaliana HOM05D004681 ORTHO05D005541 1.5e-80 303.9 310 51.9
EL10Ac8g18317 Beta vulgaris HOM05D004681 ORTHO05D005541 1.5e-80 303.9 323 49.8
Nitab4.5_0000074g0040 Nicotiana tabacum HOM05D004681 ORTHO05D005541 2.5e-80 303.1 282 56.7
AUR62033246 Chenopodium quinoa HOM05D004681 ORTHO05D005541 3.2e-80 302.8 323 48.9
Hund09046 Selenicereus undatus HOM05D004681 ORTHO05D005541 1.2e-79 300.8 324 48.5
Lsat_1_v5_gn_4_183080 Lactuca sativa HOM05D004681 ORTHO05D005541 2.1e-79 300.1 316 50.3
Potri.018G145508 Populus trichocarpa HOM05D004681 ORTHO05D005541 2.3e-78 296.6 282 55.3
ATR0626G278 Amborella trichopoda HOM05D004681 ORTHO05D005541 2.0e-77 293.5 318 53.8
A07p01650 Brassica napus HOM05D004681 ORTHO05D005541 2.0e-77 293.5 308 51.3
BraA07t27967Z Brassica rapa HOM05D004681 ORTHO05D005541 2.0e-77 293.5 308 51.3
C07p03410 Brassica napus HOM05D004681 ORTHO05D005541 4.4e-77 292.4 308 51.3
BolC7t40740H Brassica oleracea HOM05D004681 ORTHO05D005541 4.4e-77 292.4 308 51.3
unitig_578.g16069 Utricularia gibba HOM05D004681 ORTHO05D005541 7.5e-77 291.6 314 48.7
COL.COLO4_29315 Corchorus olitorius HOM05D004681 ORTHO05D005541 9.7e-77 291.2 275 55.3
CARHR109600 Cardamine hirsuta HOM05D004681 ORTHO05D005541 1.7e-76 290.4 308 48.4
Lj7A127G13 Lonicera japonica HOM05D004681 ORTHO05D005541 4.8e-76 288.9 276 55.1
HanXRQChr10g0297571 Helianthus annuus HOM05D004681 ORTHO05D005541 2.9e-73 279.6 358 44.1
HPP92_004723 Vanilla planifolia HOM05D004681 ORTHO05D005541 5.0e-73 278.9 319 46.7
Os06g0168000 Oryza sativa ssp. japonica HOM05D004681 ORTHO05D005541 1.5e-69 267.3 332 50.3
Nn2g12745 Nelumbo nucifera HOM05D004681 ORTHO05D005541 2.8e-60 236.5 319 46.1
AUR62021331 Chenopodium quinoa HOM05D004681 ORTHO05D005541 3.7e-60 236.1 323 42.7
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 4.1e-59 232.6 321 42.1
HanXRQChr04g0105751 Helianthus annuus HOM05D004681 ORTHO05D005541 1.9e-56 223.8 182 57.7
Haze_21984 Corylus avellana HOM05D004681 ORTHO05D005541 3.7e-52 209.5 207 52.7
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 6.4e-52 208.8 468 32.7
Potri.018G147625 Populus trichocarpa HOM05D004681 ORTHO05D005541 8.3e-52 208.4 321 42.1
CDE06G1906 Ceratophyllum demersum HOM05D004681 ORTHO05D005541 6.0e-50 202.2 315 39.0
Ca_02046_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 1.0e-49 201.4 228 60.1
TAR636G1425 Trochodendron aralioides HOM05D004681 ORTHO05D005541 2.3e-49 200.3 226 49.1
vmacro23062 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 1.5e-48 197.6 273 44.0
Mapoly0001s0301 Marchantia polymorpha HOM05D004681 ORTHO05D005541 1.9e-48 197.2 320 37.8
Zm00001eb375500 Zea mays HOM05D004681 ORTHO05D005541 4.7e-47 192.6 183 53.0
Pp3c12_12510 Physcomitrium patens HOM05D004681 ORTHO05D005541 1.1e-43 181.4 311 34.7
RcHm_v2.0_Chr7g0191431 Rosa chinensis HOM05D004681 ORTHO05D005541 3.9e-41 172.9 295 38.6
CAN.G609.4 Capsicum annuum HOM05D004681 ORTHO05D005541 5.1e-41 172.6 135 62.2
Pp3c4_10660 Physcomitrium patens HOM05D004681 ORTHO05D005541 6.2e-39 165.6 312 31.1
SGA_v2.0_scaffold41G15854 Striga asiatica HOM05D004681 ORTHO05D005541 1.3e-36 157.9 260 41.5
SMO358G0154 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 1.7e-36 157.5 324 37.3
AagrBONN_evm.TU.Sc2ySwM_228.4196 Anthoceros agrestis HOM05D004681 ORTHO05D005541 2.2e-36 157.1 301 32.9
Potri.001G065336 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.4e-27 127.9 114 57.0
CAN.G497.61 Capsicum annuum HOM05D004681 ORTHO05D005541 4.2e-27 126.3 110 53.6
CAN.G266.1 Capsicum annuum HOM05D004681 ORTHO05D005541 9.9e-21 105.1 162 40.7
CBR_g39348 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-20 104.0 227 30.8
SMO367G0296 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 2.9e-20 103.6 234 34.2
Potri.018G145080 Populus trichocarpa HOM05D004681 ORTHO05D005541 6.4e-20 102.4 168 50.0
Potri.001G064609 Populus trichocarpa HOM05D004681 ORTHO05D005541 3.0e-17 93.6 78 55.1
Haze_21988 Corylus avellana HOM05D004681 ORTHO05D005541 1.5e-16 91.3 134 44.0
QL05p087685 Quercus lobata HOM05D004681 ORTHO05D005541 7.6e-13 79.0 208 30.8
vmacro04071 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 2.4e-11 73.9 114 50.0
Haze_21985 Corylus avellana HOM05D004681 ORTHO05D005541 7.1e-11 72.4 114 44.7
PRCOL_00000454 Prasinoderma coloniale HOM05D004681 ORTHO05D005541 7.1e-11 72.4 324 25.0
SMO367G1182 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 7.1e-11 72.4 170 30.6
Potri.001G065000 Populus trichocarpa HOM05D004681 ORTHO05D005541 9.3e-11 72.0 101 42.6
SMO230G0066 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 1.3e-09 68.2 223 29.1
HanXRQChr04g0105741 Helianthus annuus HOM05D004681 ORTHO05D005541 1.6e-07 61.2 122 36.9


User provided reference genes

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