Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G098800 Glycine max HOM05D005971 ORTHO05D007459 5.6e-87 324.3 173 100.0
Glyma.13G358366 Glycine max HOM05D005971 ORTHO05D007459 3.5e-73 278.5 152 97.4
Glyma.15G255000 Glycine max HOM05D005971 ORTHO05D007459 4.9e-59 231.5 148 84.5
Phvul.005G056400 Phaseolus vulgaris HOM05D005971 ORTHO05D007459 1.9e-58 229.6 148 82.4
VMungo1080G0173 Vigna mungo HOM05D005971 ORTHO05D007459 2.5e-58 229.2 148 81.8
Lj3g0007743 Lotus japonicus HOM05D005971 ORTHO05D007459 7.1e-50 201.1 148 75.0
Lalb_Chr25g0285011 Lupinus albus HOM05D005971 ORTHO05D007459 7.1e-50 201.1 148 72.3
arahy.Tifrunner.gnm1.ann1.MUD8D6 Arachis hypogaea HOM05D005971 ORTHO05D007459 1.0e-48 197.2 148 70.3
TPR.G9756 Trifolium pratense HOM05D005971 ORTHO05D007459 3.0e-48 195.7 148 75.0
Ca_03684_v3 Cicer arietinum L. HOM05D005971 ORTHO05D007459 5.7e-47 191.4 149 72.5
Medtr2g069560 Medicago truncatula HOM05D005971 ORTHO05D007459 5.7e-47 191.4 148 74.3
Psat1g011400 Pisum sativum HOM05D005971 ORTHO05D007459 4.8e-46 188.3 148 73.0
Glyma.13G358300 Glycine max HOM05D005971 ORTHO05D007459 6.9e-45 184.5 155 71.0
QL04p073974 Quercus lobata HOM05D005971 ORTHO05D007459 1.2e-33 147.1 148 55.4
CSS0033662 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 1.8e-32 143.3 148 51.4
CSS0049989 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 1.8e-32 143.3 148 51.4
Dinv19623 Davidia involucrata HOM05D005971 ORTHO05D007459 1.5e-31 140.2 148 52.0
Lj1C905G3 Lonicera japonica HOM05D005971 ORTHO05D007459 1.4e-29 133.7 148 46.6
Ciclev10018677m.g Citrus clementina HOM05D005971 ORTHO05D007459 1.8e-29 133.3 146 47.3
Potri.001G457550 Populus trichocarpa HOM05D005971 ORTHO05D007459 5.3e-29 131.7 148 50.7
Atru.chr12.2184 Acer truncatum HOM05D005971 ORTHO05D007459 7.0e-29 131.3 146 50.0
Prupe.4G140600 Prunus persica HOM05D005971 ORTHO05D007459 1.5e-28 130.2 148 50.7
Thecc.07G154200 Theobroma cacao HOM05D005971 ORTHO05D007459 3.5e-28 129.0 148 48.0
Cc05_g16010 Coffea canephora HOM05D005971 ORTHO05D007459 4.5e-28 128.6 148 50.0
Cpa.g.sc10.37 Carica papaya HOM05D005971 ORTHO05D007459 5.9e-28 128.3 148 49.3
CANSAT80G2256 Cannabis sativa HOM05D005971 ORTHO05D007459 1.0e-27 127.5 148 48.0
Nitab4.5_0000611g0060 Nicotiana tabacum HOM05D005971 ORTHO05D007459 1.0e-27 127.5 148 44.6
Sabra16G0310100 Salix brachista HOM05D005971 ORTHO05D007459 1.0e-27 127.5 148 48.6
MD05G1219300 Malus domestica HOM05D005971 ORTHO05D007459 1.3e-27 127.1 148 50.7
Cfa019419 Carpinus fangiana HOM05D005971 ORTHO05D007459 2.2e-27 126.3 148 48.0
GSVIVG01020430001 Vitis vinifera HOM05D005971 ORTHO05D007459 2.2e-27 126.3 148 43.9
ClCG11G016380 Citrullus lanatus HOM05D005971 ORTHO05D007459 3.8e-27 125.6 148 42.6
PGSC0003DMG401011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 3.8e-27 125.6 148 45.9
Nitab4.5_0004488g0030 Nicotiana tabacum HOM05D005971 ORTHO05D007459 6.5e-27 124.8 148 45.9
Peaxi162Scf00267g01016 Petunia axillaris HOM05D005971 ORTHO05D007459 6.5e-27 124.8 148 44.6
Solyc10g005600.4 Solanum lycopersicum HOM05D005971 ORTHO05D007459 1.5e-26 123.6 148 45.3
Actinidia35435 Actinidia chinensis HOM05D005971 ORTHO05D007459 1.9e-26 123.2 148 46.6
RcHm_v2.0_Chr5g0026671 Rosa chinensis HOM05D005971 ORTHO05D007459 4.2e-26 122.1 147 43.5
CAN.G492.69 Capsicum annuum HOM05D005971 ORTHO05D007459 5.5e-26 121.7 148 45.3
Duzib268G0338 Durio zibethinus HOM05D005971 ORTHO05D007459 5.5e-26 121.7 148 48.0
Gohir.D13G157600 Gossypium hirsutum HOM05D005971 ORTHO05D007459 5.5e-26 121.7 148 47.3
Gorai.013G178300 Gossypium raimondii HOM05D005971 ORTHO05D007459 5.5e-26 121.7 148 47.3
Peaxi162Scf00095g00013 Petunia axillaris HOM05D005971 ORTHO05D007459 5.5e-26 121.7 148 43.9
AL1G14000 Arabidopsis lyrata HOM05D005971 ORTHO05D007459 7.2e-26 121.3 148 42.6
Sopen10g001570 Solanum pennellii HOM05D005971 ORTHO05D007459 7.2e-26 121.3 148 44.6
MELO3C010564.2 Cucumis melo HOM05D005971 ORTHO05D007459 1.2e-25 120.6 148 42.6
CARHR003730 Cardamine hirsuta HOM05D005971 ORTHO05D007459 1.6e-25 120.2 149 42.3
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 1.6e-25 120.2 148 41.9
FvH4_3g15860 Fragaria vesca HOM05D005971 ORTHO05D007459 1.6e-25 120.2 148 43.9
FAN11G3334 Fragaria x ananassa HOM05D005971 ORTHO05D007459 1.6e-25 120.2 148 43.9
FAN21G1476 Fragaria x ananassa HOM05D005971 ORTHO05D007459 1.6e-25 120.2 148 43.9
FAN16G0465 Fragaria x ananassa HOM05D005971 ORTHO05D007459 2.1e-25 119.8 148 43.9
GSVIVG01020427001 Vitis vinifera HOM05D005971 ORTHO05D007459 3.6e-25 119.0 148 43.2
Rhsim04G0005800 Rhododendron simsii HOM05D005971 ORTHO05D007459 6.1e-25 118.2 148 43.9
DCAR_009638 Daucus carota HOM05D005971 ORTHO05D007459 8.0e-25 117.9 150 44.0
Atru.chr12.2180 Acer truncatum HOM05D005971 ORTHO05D007459 1.4e-24 117.1 137 49.6
Thhalv10006788m.g Eutrema salsugineum HOM05D005971 ORTHO05D007459 1.8e-24 116.7 148 41.2
Gohir.A13G153099 Gossypium hirsutum HOM05D005971 ORTHO05D007459 2.3e-24 116.3 148 45.9
AT1G04390 Arabidopsis thaliana HOM05D005971 ORTHO05D007459 3.0e-24 115.9 148 41.2
Sed0013026 Sechium edule HOM05D005971 ORTHO05D007459 4.0e-24 115.5 148 41.2
Ah.06g185720 Amaranthus hybridus HOM05D005971 ORTHO05D007459 8.8e-24 114.4 148 41.2
TAR626G0017 Trochodendron aralioides HOM05D005971 ORTHO05D007459 2.0e-23 113.2 151 43.0
THA.LOC104822751 Tarenaya hassleriana HOM05D005971 ORTHO05D007459 3.3e-23 112.5 148 43.2
TWI39G0032 Tripterygium wilfordii HOM05D005971 ORTHO05D007459 4.4e-23 112.1 147 44.9
PGR031G0315 Punica granatum HOM05D005971 ORTHO05D007459 5.7e-23 111.7 148 43.9
C05p02580 Brassica napus HOM05D005971 ORTHO05D007459 1.3e-22 110.5 148 41.2
BolC5t29039H Brassica oleracea HOM05D005971 ORTHO05D007459 3.7e-22 109.0 148 40.5
BraA10t42550Z Brassica rapa HOM05D005971 ORTHO05D007459 3.7e-22 109.0 148 40.5
Aa31LG1G20480 Aethionema arabicum HOM05D005971 ORTHO05D007459 4.8e-22 108.6 148 39.2
vmacro09786 Vaccinium macrocarpon HOM05D005971 ORTHO05D007459 4.8e-22 108.6 148 40.5
Carub.0001s0356 Capsella rubella HOM05D005971 ORTHO05D007459 1.4e-21 107.1 148 37.8
A10p02830 Brassica napus HOM05D005971 ORTHO05D007459 2.4e-21 106.3 148 39.9
SGA_v2.0_scaffold7G03577 Striga asiatica HOM05D005971 ORTHO05D007459 3.1e-21 105.9 147 41.5
ECA240G1928 Erigeron canadensis HOM05D005971 ORTHO05D007459 7.0e-21 104.8 148 40.5
Lsat_1_v5_gn_7_71401 Lactuca sativa HOM05D005971 ORTHO05D007459 1.6e-20 103.6 148 41.2
Nn7g37820 Nelumbo nucifera HOM05D005971 ORTHO05D007459 2.0e-20 103.2 151 39.1
EL10Ac2g03354 Beta vulgaris HOM05D005971 ORTHO05D007459 1.7e-19 100.1 148 38.5
SalBow8G3201 Salvia bowleyana HOM05D005971 ORTHO05D007459 1.7e-19 100.1 148 39.2
Migut.M01561 Erythranthe guttata HOM05D005971 ORTHO05D007459 2.2e-19 99.8 149 42.3
Hund12466 Selenicereus undatus HOM05D005971 ORTHO05D007459 2.2e-19 99.8 148 37.2
Aqoxy2G04113 Aquilegia oxysepala HOM05D005971 ORTHO05D007459 5.0e-19 98.6 152 40.8
AUR62038398 Chenopodium quinoa HOM05D005971 ORTHO05D007459 6.5e-19 98.2 148 35.1
Glyma.13G052600 Glycine max HOM05D005971 ORTHO05D007459 2.5e-18 96.3 51 90.2
C03p00610 Brassica napus HOM05D005971 ORTHO05D040551 1.2e-17 94.0 151 37.7
FAN25G3291 Fragaria x ananassa HOM05D005971 ORTHO05D007459 2.1e-17 93.2 148 40.5
HanXRQChr05g0160991 Helianthus annuus HOM05D005971 ORTHO05D007459 3.6e-17 92.4 148 40.5
Glyma.13G099002 Glycine max HOM05D032893 ORTHO05D007459 8.0e-17 91.3 121 55.4
unitig_26.g10082 Utricularia gibba HOM05D005971 ORTHO05D007459 1.0e-16 90.9 146 37.0
Oeu052011.1 Olea europaea HOM05D005971 ORTHO05D007459 1.8e-16 90.1 103 47.6
PSO675G3107 Papaver somniferum HOM05D005971 ORTHO05D007459 1.8e-16 90.1 151 38.4
Zm00001eb273960 Zea mays HOM05D005971 ORTHO05D007459 5.2e-16 88.6 150 33.3
PSO017G5934 Papaver somniferum HOM05D005971 ORTHO05D007459 7.5e-15 84.7 151 35.8
CDE12G0091 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 3.7e-14 82.4 152 34.9
Os06g0674800 Oryza sativa ssp. japonica HOM05D005971 ORTHO05D007459 8.3e-14 81.3 150 30.7
Hma1.2p1_0637F.1_g193590 Hydrangea macrophylla HOM05D005971 ORTHO05D007459 2.5e-10 69.7 76 50.0
Medtr2g073720 Medicago truncatula HOM05D005971 ORTHO05D007459 1.4e-08 63.9 75 53.3
HPP92_026349 Vanilla planifolia HOM05D005971 ORTHO05D007459 1.4e-08 63.9 151 29.8
Manes.14G015836 Manihot esculenta HOM05D005971 ORTHO05D007459 1.8e-08 63.5 68 44.1
GSVIVG01020426001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.2e-07 60.8 61 47.5


User provided reference genes

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