Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G097500 Glycine max HOM05D004757 ORTHO05D005743 2.8e-67 258.5 129 100.0
Glyma.17G062100 Glycine max HOM05D004757 ORTHO05D005743 1.5e-60 236.1 132 92.4
Phvul.003G144000 Phaseolus vulgaris HOM05D004757 ORTHO05D005743 4.8e-59 231.1 129 88.4
VMungo1215G0044 Vigna mungo HOM05D004757 ORTHO05D005743 3.1e-50 201.8 111 88.3
Lj4g0011233 Lotus japonicus HOM05D004757 ORTHO05D005743 5.0e-48 194.5 137 78.1
Medtr4g127810 Medicago truncatula HOM05D004757 ORTHO05D005743 4.0e-45 184.9 140 74.3
Psat4g012760 Pisum sativum HOM05D004757 ORTHO05D005743 1.5e-44 183.0 143 68.5
TPR.G5446 Trifolium pratense HOM05D004757 ORTHO05D005743 2.0e-44 182.6 141 73.0
ClCG06G013460 Citrullus lanatus HOM05D004757 ORTHO05D005743 4.5e-41 171.4 138 70.3
Lalb_Chr13g0300141 Lupinus albus HOM05D004757 ORTHO05D005743 2.9e-40 168.7 134 66.4
Ca_21237_v3 Cicer arietinum L. HOM05D004757 ORTHO05D005743 3.8e-40 168.3 115 76.5
Cfa013398 Carpinus fangiana HOM05D004757 ORTHO05D005743 8.5e-40 167.2 134 67.9
CsaV3_1G031720 Cucumis sativus L. HOM05D004757 ORTHO05D005743 1.1e-39 166.8 139 68.3
Sed0015670 Sechium edule HOM05D004757 ORTHO05D005743 1.5e-39 166.4 133 69.2
Sed0003925 Sechium edule HOM05D004757 ORTHO05D005743 3.2e-39 165.2 147 66.0
CiPaw.07G193700 Carya illinoinensis HOM05D004757 ORTHO05D005743 9.4e-39 163.7 134 68.7
Lalb_Chr12g0199461 Lupinus albus HOM05D004757 ORTHO05D005743 2.1e-38 162.5 142 64.1
Atru.chr7.878 Acer truncatum HOM05D004757 ORTHO05D005743 6.1e-38 161.0 135 67.4
Manes.06G022800 Manihot esculenta HOM05D004757 ORTHO05D005743 6.1e-38 161.0 137 69.3
Gohir.A08G083700 Gossypium hirsutum HOM05D004757 ORTHO05D005743 1.5e-36 156.4 148 62.2
Potri.006G166400 Populus trichocarpa HOM05D004757 ORTHO05D005743 2.6e-36 155.6 146 62.3
AT2G18910 Arabidopsis thaliana HOM05D004757 ORTHO05D005743 3.4e-36 155.2 136 64.0
RcHm_v2.0_Chr4g0401201 Rosa chinensis HOM05D004757 ORTHO05D005743 5.7e-36 154.5 139 62.6
Gohir.D08G093400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 9.8e-36 153.7 148 61.5
AL3G53010 Arabidopsis lyrata HOM05D004757 ORTHO05D005743 1.3e-35 153.3 136 63.2
Cpa.g.sc95.44 Carica papaya HOM05D004757 ORTHO05D005743 1.3e-35 153.3 136 65.4
FAN17G1906 Fragaria x ananassa HOM05D004757 ORTHO05D005743 1.3e-35 153.3 135 63.0
Prupe.1G082700 Prunus persica HOM05D004757 ORTHO05D005743 1.3e-35 153.3 134 66.4
BcaB07g31638 Brassica carinata HOM05D004757 ORTHO05D005743 1.7e-35 152.9 136 61.8
MD16G1255800 Malus domestica HOM05D004757 ORTHO05D005743 1.7e-35 152.9 148 60.8
FvH4_4g07900 Fragaria vesca HOM05D004757 ORTHO05D005743 2.2e-35 152.5 140 61.4
Potri.018G090900 Populus trichocarpa HOM05D004757 ORTHO05D005743 2.8e-35 152.1 144 61.1
Duzib150G0244 Durio zibethinus HOM05D004757 ORTHO05D005743 1.1e-34 150.2 141 60.3
Duzib170G0153 Durio zibethinus HOM05D004757 ORTHO05D005743 1.1e-34 150.2 149 59.1
BcaC04g22879 Brassica carinata HOM05D004757 ORTHO05D005743 1.8e-34 149.4 136 62.5
C07p03670 Brassica napus HOM05D004757 ORTHO05D005743 1.8e-34 149.4 137 62.8
BolC7t40764H Brassica oleracea HOM05D004757 ORTHO05D005743 1.8e-34 149.4 137 62.8
Manes.14G157383 Manihot esculenta HOM05D004757 ORTHO05D005743 2.4e-34 149.1 138 63.8
A07p01750 Brassica napus HOM05D004757 ORTHO05D005743 3.1e-34 148.7 137 62.0
Carub.0003s3315 Capsella rubella HOM05D004757 ORTHO05D005743 4.1e-34 148.3 136 61.0
Thecc.09G175100 Theobroma cacao HOM05D004757 ORTHO05D005743 4.1e-34 148.3 150 56.7
A09p12120 Brassica napus HOM05D004757 ORTHO05D005743 5.4e-34 147.9 137 61.3
CARHR109470 Cardamine hirsuta HOM05D004757 ORTHO05D005743 5.4e-34 147.9 136 61.0
MELO3C017451.2 Cucumis melo HOM05D004757 ORTHO05D005743 5.4e-34 147.9 128 66.4
Aa31LG8G16000 Aethionema arabicum HOM05D004757 ORTHO05D005743 9.1e-34 147.1 131 62.6
BcaB03g16684 Brassica carinata HOM05D004757 ORTHO05D005743 1.6e-33 146.4 136 61.8
BolC9t54334H Brassica oleracea HOM05D004757 ORTHO05D005743 1.6e-33 146.4 146 58.2
QL02p098330 Quercus lobata HOM05D004757 ORTHO05D005743 1.6e-33 146.4 172 52.9
C03p59380 Brassica napus HOM05D004757 ORTHO05D005743 2.7e-33 145.6 136 60.3
TWI34G1741 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 2.7e-33 145.6 130 64.6
BolC3t18202H Brassica oleracea HOM05D004757 ORTHO05D005743 4.5e-33 144.8 136 59.6
BraA09t36856Z Brassica rapa HOM05D004757 ORTHO05D005743 4.5e-33 144.8 137 61.3
Hma1.2p1_1303F.1_g274440 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 4.5e-33 144.8 159 53.5
Haze_21940 Corylus avellana HOM05D004757 ORTHO05D005743 5.9e-33 144.4 117 67.5
THA.LOC104803943 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 5.9e-33 144.4 136 58.1
Thhalv10022848m.g Eutrema salsugineum HOM05D004757 ORTHO05D005743 7.7e-33 144.1 132 60.6
Gorai.004G027500 Gossypium raimondii HOM05D004757 ORTHO05D005743 7.7e-33 144.1 141 60.3
MD13G1249500 Malus domestica HOM05D004757 ORTHO05D005743 1.3e-32 143.3 145 58.6
Sp3g32380 Schrenkiella parvula HOM05D004757 ORTHO05D005743 1.3e-32 143.3 132 59.1
Duzib168G0914 Durio zibethinus HOM05D004757 ORTHO05D005743 1.7e-32 142.9 147 56.5
TWI63G0987 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 1.7e-32 142.9 130 63.8
Peaxi162Scf01558g00012 Petunia axillaris HOM05D004757 ORTHO05D005743 2.9e-32 142.1 150 54.0
TAR626G1857 Trochodendron aralioides HOM05D004757 ORTHO05D005743 2.9e-32 142.1 137 58.4
Gohir.D08G030000 Gossypium hirsutum HOM05D004757 ORTHO05D005743 3.8e-32 141.7 141 59.6
C09p14310 Brassica napus HOM05D004757 ORTHO05D005743 8.6e-32 140.6 146 57.5
BraA06t26238Z Brassica rapa HOM05D004757 ORTHO05D005743 1.1e-31 140.2 133 58.6
FAN12G2780 Fragaria x ananassa HOM05D004757 ORTHO05D005743 1.9e-31 139.4 163 52.8
Gohir.A08G019400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 3.2e-31 138.7 139 58.3
Sc08g0005260 Simmondsia chinensis HOM05D004757 ORTHO05D005743 3.2e-31 138.7 127 58.3
Actinidia01305 Actinidia chinensis HOM05D004757 ORTHO05D005743 4.2e-31 138.3 131 56.5
Hma1.2p1_2317F.1_g319740 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 4.2e-31 138.3 133 58.6
FAN07G0988 Fragaria x ananassa HOM05D004757 ORTHO05D005743 7.2e-31 137.5 163 52.1
FAN22G2108 Fragaria x ananassa HOM05D004757 ORTHO05D005743 7.2e-31 137.5 163 52.1
Hma1.2p1_0935F.1_g238550 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 7.2e-31 137.5 134 59.0
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 9.5e-31 137.1 118 64.4
PSO063G6152 Papaver somniferum HOM05D004757 ORTHO05D005743 2.1e-30 136.0 181 49.7
A06p33080 Brassica napus HOM05D004757 ORTHO05D005743 2.8e-30 135.6 130 54.6
THA.LOC104803488 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 2.8e-30 135.6 138 56.5
EL10Ac8g18296 Beta vulgaris HOM05D004757 ORTHO05D005743 3.6e-30 135.2 131 57.3
Dinv19553 Davidia involucrata HOM05D004757 ORTHO05D005743 4.7e-30 134.8 125 60.8
PSO170G5353 Papaver somniferum HOM05D004757 ORTHO05D005743 4.7e-30 134.8 181 49.7
CANSAT11G1025 Cannabis sativa HOM05D004757 ORTHO05D005743 1.4e-29 133.3 143 55.9
Actinidia19844 Actinidia chinensis HOM05D004757 ORTHO05D005743 2.3e-29 132.5 128 58.6
Nitab4.5_0010128g0010 Nicotiana tabacum HOM05D004757 ORTHO05D005743 4.0e-29 131.7 147 51.7
unitig_21.g20652 Utricularia gibba HOM05D004757 ORTHO05D005743 4.0e-29 131.7 138 54.3
BcaC06g36489 Brassica carinata HOM05D004757 ORTHO05D005743 6.8e-29 131.0 117 64.1
Ciclev10009829m.g Citrus clementina HOM05D004757 ORTHO05D005743 6.8e-29 131.0 123 61.8
Gorai.004G099000 Gossypium raimondii HOM05D004757 ORTHO05D005743 8.8e-29 130.6 137 58.4
HanXRQChr09g0254201 Helianthus annuus HOM05D004757 ORTHO05D005743 1.2e-28 130.2 117 65.0
Solyc07g006960.3 Solanum lycopersicum HOM05D004757 ORTHO05D005743 1.2e-28 130.2 134 56.0
CDE04G2108 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 2.6e-28 129.0 130 53.1
PGR044G0017 Punica granatum HOM05D004757 ORTHO05D005743 2.6e-28 129.0 130 55.4
CiPaw.08G035200 Carya illinoinensis HOM05D004757 ORTHO05D005743 5.7e-28 127.9 145 54.5
Eucgr.C00145 Eucalyptus grandis HOM05D004757 ORTHO05D005743 5.7e-28 127.9 112 59.8
PGR142G2781 Punica granatum HOM05D004757 ORTHO05D005743 5.7e-28 127.9 153 52.9
Cc06_g12990 Coffea canephora HOM05D004757 ORTHO05D005743 9.8e-28 127.1 160 51.2
HanXRQChr09g0244371 Helianthus annuus HOM05D004757 ORTHO05D005743 1.3e-27 126.7 112 60.7
GSVIVG01035530001 Vitis vinifera HOM05D004757 ORTHO05D005743 3.7e-27 125.2 135 54.1
CDE02G3269 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 4.9e-27 124.8 136 50.7
Hund09034 Selenicereus undatus HOM05D004757 ORTHO05D005743 4.9e-27 124.8 128 54.7
Ah.14g083740 Amaranthus hybridus HOM05D004757 ORTHO05D005743 6.3e-27 124.4 131 58.8
Oeu025694.3 Olea europaea HOM05D004757 ORTHO05D005743 6.3e-27 124.4 120 59.2
Lsat_1_v5_gn_7_54961 Lactuca sativa HOM05D004757 ORTHO05D005743 1.4e-26 123.2 130 54.6
ECA234G2687 Erigeron canadensis HOM05D004757 ORTHO05D005743 3.1e-26 122.1 133 53.4
Migut.J01503 Erythranthe guttata HOM05D004757 ORTHO05D005743 4.1e-26 121.7 140 52.9
DCAR_020127 Daucus carota HOM05D004757 ORTHO05D005743 9.2e-26 120.6 132 54.5
ATR0580G064 Amborella trichopoda HOM05D004757 ORTHO05D005743 1.2e-25 120.2 126 48.4
ECA240G0762 Erigeron canadensis HOM05D004757 ORTHO05D005743 1.2e-25 120.2 121 56.2
MSTRG.19719 Avicennia marina HOM05D004757 ORTHO05D005743 1.6e-25 119.8 139 51.1
Lsat_1_v5_gn_5_85101 Lactuca sativa HOM05D004757 ORTHO05D005743 1.6e-25 119.8 132 51.5
Sopen07g003050 Solanum pennellii HOM05D004757 ORTHO05D005743 2.7e-25 119.0 128 52.3
Aqoxy7G02958 Aquilegia oxysepala HOM05D004757 ORTHO05D005743 4.5e-25 118.2 131 53.4
Migut.K00229 Erythranthe guttata HOM05D004757 ORTHO05D005743 4.5e-25 118.2 133 54.1
Rhsim01G0003200 Rhododendron simsii HOM05D004757 ORTHO05D005743 7.8e-25 117.5 132 53.8
PGSC0003DMG400018757 Solanum tuberosum HOM05D004757 ORTHO05D005743 7.8e-25 117.5 123 57.7
TAR636G1688 Trochodendron aralioides HOM05D004757 ORTHO05D005743 7.8e-25 117.5 119 54.6
ECA236G5014 Erigeron canadensis HOM05D004757 ORTHO05D005743 2.3e-24 115.9 121 53.7
SalBow6G1691 Salvia bowleyana HOM05D004757 ORTHO05D005743 2.9e-24 115.5 146 50.0
Sc14g0001290 Simmondsia chinensis HOM05D004757 ORTHO05D005743 6.6e-24 114.4 111 53.2
CSS0015413 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 2.5e-23 112.5 114 53.5
Nn2g12725 Nelumbo nucifera HOM05D004757 ORTHO05D005743 3.3e-23 112.1 143 48.3
Oeu025209.1 Olea europaea HOM05D004757 ORTHO05D005743 3.3e-23 112.1 122 53.3
Sabra06G0128000 Salix brachista HOM05D004757 ORTHO05D005743 3.3e-23 112.1 160 48.1
TAR383G0800 Trochodendron aralioides HOM05D004757 ORTHO05D005743 5.6e-23 111.3 126 52.4
Nn8g40409 Nelumbo nucifera HOM05D004757 ORTHO05D005743 9.5e-23 110.5 155 45.2
HanXRQChr10g0308501 Helianthus annuus HOM05D004757 ORTHO05D005743 6.1e-22 107.8 127 50.4
MBI16_g31788_MAGBIO Magnolia biondii HOM05D004757 ORTHO05D005743 6.1e-22 107.8 149 47.7
SGA_v2.0_scaffold66G22433 Striga asiatica HOM05D004757 ORTHO05D005743 1.4e-21 106.7 121 53.7
Sabra18G0078100 Salix brachista HOM05D004757 ORTHO05D005743 2.3e-21 105.9 160 45.6
HPP92_015369 Vanilla planifolia HOM05D004757 ORTHO05D005743 5.2e-21 104.8 145 47.6
CAN.G1464.4 Capsicum annuum HOM05D004757 ORTHO05D005743 1.2e-20 103.6 108 53.7
HanXRQChr05g0142021 Helianthus annuus HOM05D004757 ORTHO05D005743 1.2e-20 103.6 111 54.1
Eucgr.L02640 Eucalyptus grandis HOM05D004757 ORTHO05D005743 1.5e-20 103.2 119 52.1
vmacro13132 Vaccinium macrocarpon HOM05D004757 ORTHO05D005743 2.6e-20 102.4 166 42.2
MSTRG.6239 Avicennia marina HOM05D004757 ORTHO05D005743 9.8e-20 100.5 130 48.5
CSS0012735 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 1.7e-19 99.8 129 48.1
Lsat_1_v5_gn_8_68041 Lactuca sativa HOM05D004757 ORTHO05D005743 6.4e-19 97.8 110 50.0
ATR0030G045 Amborella trichopoda HOM05D004757 ORTHO05D005743 5.4e-18 94.7 130 46.9
Ah.09g229970 Amaranthus hybridus HOM05D004757 ORTHO05D005743 1.3e-16 90.1 171 41.5
Peaxi162Scf00200g00183 Petunia axillaris HOM05D004757 ORTHO05D005743 6.6e-16 87.8 93 54.8
Peaxi162Scf00200g01819 Petunia axillaris HOM05D004757 ORTHO05D005743 1.5e-15 86.7 84 57.1
Os02g0461900 Oryza sativa ssp. japonica HOM05D004757 ORTHO05D005743 4.3e-15 85.1 176 39.2
Zm00001eb180540 Zea mays HOM05D004757 ORTHO05D005743 4.3e-15 85.1 123 46.3
Zm00001eb236700 Zea mays HOM05D004757 ORTHO05D005743 1.1e-13 80.5 178 34.8
Zm00001eb420280 Zea mays HOM05D004757 ORTHO05D005743 4.4e-12 75.1 148 35.8
Zm00001eb087060 Zea mays HOM05D004757 ORTHO05D005743 7.5e-12 74.3 51 62.7
AUR62043442 Chenopodium quinoa HOM05D000216 ORTHO05D003518 2.9e-11 72.4 90 44.4
Dinv41223 Davidia involucrata HOM05D004757 ORTHO05D005743 2.9e-11 72.4 104 48.1
Peaxi162Scf00627g00011 Petunia axillaris HOM05D004757 ORTHO05D005743 6.0e-09 64.7 89 49.4
Peaxi162Scf00200g00182 Petunia axillaris HOM05D004757 ORTHO05D005743 7.8e-09 64.3 98 44.9
Nitab4.5_0000957g0030 Nicotiana tabacum HOM05D004757 ORTHO05D005743 5.6e-07 58.2 51 64.7


User provided reference genes

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