Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 0.0e+00 1605.5 803 100.0
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 0.0e+00 1507.7 804 93.8
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 0.0e+00 1279.2 805 80.7
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 0.0e+00 1243.4 803 78.7
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 0.0e+00 1192.2 806 74.9
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 0.0e+00 1156.0 808 73.8
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 0.0e+00 1146.0 805 72.5
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 0.0e+00 1135.9 806 72.5
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 0.0e+00 1135.2 806 72.3
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 0.0e+00 1111.7 805 70.7
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 0.0e+00 1102.4 809 71.1
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 0.0e+00 1085.1 805 69.3
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 3.5e-293 1011.5 815 64.3
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 5.1e-292 1007.7 815 64.2
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 5.6e-291 1004.2 813 64.2
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 4.5e-288 994.6 817 62.4
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 1.0e-284 983.4 812 62.2
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 3.9e-284 981.5 818 62.2
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 3.3e-283 978.4 819 62.0
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 1.3e-282 976.5 814 62.3
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 1.8e-281 972.6 816 61.9
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 2.6e-280 968.8 814 61.5
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 2.5e-278 962.2 824 61.4
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 4.2e-278 961.4 817 61.7
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.0e-276 956.8 810 61.5
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 3.9e-276 954.9 821 61.4
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 5.1e-276 954.5 879 57.6
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 6.7e-276 954.1 811 61.5
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 1.5e-275 953.0 825 61.2
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 2.5e-275 952.2 818 61.0
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 3.3e-275 951.8 818 60.5
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 7.4e-275 950.7 818 60.9
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.1e-273 946.8 811 61.2
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 1.4e-273 946.4 818 59.4
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 2.4e-273 945.7 817 59.4
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 6.9e-273 944.1 817 59.7
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 6.9e-273 944.1 817 58.9
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 4.5e-272 941.4 812 60.2
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 4.5e-272 941.4 818 60.4
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 3.8e-271 938.3 812 60.8
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 1.1e-270 936.8 818 59.9
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 4.2e-270 934.9 814 59.2
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 3.0e-268 928.7 820 59.3
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 3.9e-268 928.3 820 59.3
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 2.0e-267 926.0 815 59.3
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 1.4e-265 919.8 814 58.5
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 4.1e-265 918.3 874 56.6
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 2.0e-264 916.0 817 59.1
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 2.2e-263 912.5 820 58.2
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 2.7e-261 905.6 789 60.7
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 3.6e-261 905.2 813 58.2
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 4.4e-259 898.3 813 57.3
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 1.7e-258 896.3 818 57.1
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 9.1e-257 890.6 838 56.4
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 5.9e-256 887.9 814 56.3
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 7.7e-256 887.5 811 57.6
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 5.0e-255 884.8 820 56.5
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 5.0e-255 884.8 819 56.7
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 1.9e-254 882.9 809 56.5
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 5.5e-254 881.3 819 56.2
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 6.1e-253 877.9 818 56.5
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 1.4e-252 876.7 818 56.5
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 2.3e-252 875.9 818 56.4
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 4.0e-252 875.2 821 56.6
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 6.7e-252 874.4 817 56.7
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 1.1e-251 873.6 818 56.4
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 1.5e-251 873.2 820 55.9
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 2.0e-251 872.8 813 56.5
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 2.6e-251 872.5 818 56.2
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 8.2e-250 867.5 825 55.9
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 1.4e-249 866.7 816 56.1
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 1.8e-249 866.3 822 56.8
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 3.1e-249 865.5 826 55.7
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 9.1e-249 864.0 813 54.5
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 2.7e-248 862.4 816 54.9
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 1.3e-247 860.1 817 55.6
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 1.3e-247 860.1 814 55.8
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 1.9e-246 856.3 856 54.4
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 1.4e-244 850.1 825 54.5
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 9.8e-243 844.0 822 55.2
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 1.8e-241 839.7 839 55.3
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 1.3e-239 833.6 820 56.5
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 1.5e-238 830.1 817 55.8
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 2.3e-236 822.8 822 54.4
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 1.5e-230 803.5 817 53.0
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 1.8e-228 796.6 812 53.6
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 1.1e-225 787.3 812 51.0
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 1.1e-222 777.3 814 51.5
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 2.5e-222 776.2 805 52.3
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 3.4e-219 765.8 830 51.8
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 5.4e-217 758.4 814 50.5
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 2.0e-216 756.5 814 51.0
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 7.8e-216 754.6 585 65.8
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 2.8e-213 746.1 815 49.1
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 3.2e-209 732.6 816 49.3
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 2.3e-207 726.5 625 57.9
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 9.5e-206 721.1 750 52.4
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 2.1e-192 676.8 811 46.1
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 2.7e-184 649.8 886 44.5
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 3.3e-182 642.9 539 60.3
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 1.1e-174 617.8 817 44.4
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 1.0e-170 604.7 819 44.3
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 3.2e-169 599.7 822 41.8
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 4.5e-163 579.3 848 42.0
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 8.7e-159 565.1 816 42.9
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 3.4e-147 526.6 804 41.4
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 2.5e-145 520.4 848 36.9
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 1.3e-141 508.1 463 56.8
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 7.7e-139 498.8 586 48.8
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 2.4e-132 477.2 850 35.8
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 9.1e-132 475.3 830 36.7
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 2.7e-131 473.8 689 42.1
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 1.5e-129 468.0 816 39.5
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 2.4e-124 450.7 474 54.0
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 7.5e-118 429.1 839 34.4
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 2.2e-117 427.6 702 41.2
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 4.6e-107 393.3 338 60.1
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 1.7e-90 338.2 680 31.9
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 2.0e-86 324.7 380 47.6
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 5.3e-71 273.5 409 40.6
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 5.3e-63 246.9 273 50.2
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 1.2e-62 245.7 274 50.0
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 2.0e-62 245.0 745 29.1
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 1.3e-61 242.3 274 49.6
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 6.7e-50 203.4 196 57.7
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 3.3e-49 201.1 200 54.5
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 1.1e-47 196.1 839 24.4
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 4.5e-46 190.7 156 61.5
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 9.1e-39 166.4 93 91.4
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 1.2e-38 166.0 627 26.5
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 6.7e-34 150.2 150 52.7
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 1.5e-33 149.1 138 58.7
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 1.7e-29 135.6 132 54.5
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 6.5e-29 133.7 130 50.0
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 1.2e-14 86.3 109 46.8
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 3.5e-14 84.7 60 65.0
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 1.0e-13 83.2 109 45.9
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 1.3e-13 82.8 65 66.2
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 2.5e-12 78.6 52 73.1
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 3.2e-12 78.2 52 75.0
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 2.1e-11 75.5 169 27.8
arahy.Tifrunner.gnm1.ann1.F8045A Arachis hypogaea HOM05D062897 ORTHO05D023720 1.4e-10 72.8 44 77.3
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 3.4e-09 68.2 96 40.6
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 5.7e-09 67.4 70 51.4
arahy.Tifrunner.gnm1.ann1.NVD3GI Arachis hypogaea HOM05D001215 ORTHO05D001387 2.2e-08 65.5 98 38.8
CARHR240490 Cardamine hirsuta HOM05D004893 ORTHO05D006320 4.1e-07 61.2 83 39.8
BcaC09g48066 Brassica carinata HOM05D014782 ORTHO05D031875 1.2e-06 59.7 119 37.0
BcaC06g36526 Brassica carinata HOM05D004893 ORTHO05D032397 4.5e-06 57.8 97 37.1


User provided reference genes

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