Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G096300 Glycine max HOM05D006247 ORTHO05D007684 5.3e-81 304.3 154 100.0
Glyma.17G063800 Glycine max HOM05D006247 ORTHO05D007684 5.5e-70 267.7 152 90.1
Phvul.003G146300 Phaseolus vulgaris HOM05D006247 ORTHO05D007684 7.7e-64 247.3 152 83.6
VMungo1215G1070 Vigna mungo HOM05D006247 ORTHO05D007684 4.2e-62 241.5 153 83.0
Ca_21220_v3 Cicer arietinum L. HOM05D006247 ORTHO05D007684 6.8e-60 234.2 152 78.9
Lj4g0017814 Lotus japonicus HOM05D006247 ORTHO05D007684 3.4e-59 231.9 152 77.0
TPR.G5375 Trifolium pratense HOM05D006247 ORTHO05D007684 3.9e-55 218.4 152 74.3
Medtr4g128240 Medicago truncatula HOM05D006247 ORTHO05D007684 1.5e-54 216.5 152 72.4
Lalb_Chr12g0199361 Lupinus albus HOM05D006247 ORTHO05D007684 1.9e-54 216.1 151 72.8
arahy.Tifrunner.gnm1.ann1.B1Q0FL Arachis hypogaea HOM05D006247 ORTHO05D007684 1.2e-53 213.4 152 73.7
Psat4g012560 Pisum sativum HOM05D006247 ORTHO05D007684 1.0e-52 210.3 152 69.7
QL02p097643 Quercus lobata HOM05D006247 ORTHO05D007684 2.1e-45 186.0 152 58.6
GSVIVG01029207001 Vitis vinifera HOM05D006247 ORTHO05D007684 6.2e-45 184.5 152 59.9
CANSAT11G2703 Cannabis sativa HOM05D006247 ORTHO05D007684 8.9e-44 180.6 152 55.9
Dinv42726 Davidia involucrata HOM05D006247 ORTHO05D007684 5.8e-43 177.9 149 61.1
Dinv43375 Davidia involucrata HOM05D006247 ORTHO05D007684 5.8e-43 177.9 149 61.1
CSS0031352 Camellia sinensis var. sinensis HOM05D006247 ORTHO05D007684 7.1e-41 171.0 152 56.6
Actinidia04160 Actinidia chinensis HOM05D006247 ORTHO05D007684 9.2e-41 170.6 149 57.7
Thecc.09G172600 Theobroma cacao HOM05D006247 ORTHO05D007684 9.2e-41 170.6 152 55.3
CiPaw.07G192000 Carya illinoinensis HOM05D006247 ORTHO05D007684 1.2e-40 170.2 152 57.2
Potri.006G168900 Populus trichocarpa HOM05D006247 ORTHO05D007684 2.3e-39 166.0 152 57.2
COL.COLO4_07069 Corchorus olitorius HOM05D006247 ORTHO05D007684 3.0e-39 165.6 150 53.3
Manes.14G152800 Manihot esculenta HOM05D006247 ORTHO05D007684 6.6e-39 164.5 152 55.9
Cc06_g13290 Coffea canephora HOM05D006247 ORTHO05D007684 1.5e-38 163.3 148 54.1
PGR102G2305 Punica granatum HOM05D006247 ORTHO05D007684 1.5e-38 163.3 149 53.7
RcHm_v2.0_Chr4g0402581 Rosa chinensis HOM05D006247 ORTHO05D007684 2.5e-38 162.5 152 53.3
Ciclev10007836m.g Citrus clementina HOM05D006247 ORTHO05D007684 3.3e-38 162.2 154 54.5
FvH4_4g08310 Fragaria vesca HOM05D006247 ORTHO05D007684 4.3e-38 161.8 152 54.6
FAN12G4057 Fragaria x ananassa HOM05D006247 ORTHO05D007684 4.3e-38 161.8 152 54.6
Lj9A685T58 Lonicera japonica HOM05D006247 ORTHO05D007684 4.3e-38 161.8 150 56.0
Duzib168G0886 Durio zibethinus HOM05D006247 ORTHO05D007684 7.3e-38 161.0 151 55.6
TWI34G1331 Tripterygium wilfordii HOM05D006247 ORTHO05D007684 7.3e-38 161.0 149 55.0
TAR383G1025 Trochodendron aralioides HOM05D006247 ORTHO05D007684 7.3e-38 161.0 152 54.6
FAN22G0611 Fragaria x ananassa HOM05D006247 ORTHO05D007684 1.2e-37 160.2 152 54.6
Atru.chr7.645 Acer truncatum HOM05D006247 ORTHO05D007684 2.3e-36 156.0 150 52.0
Oeu025222.1 Olea europaea HOM05D006247 ORTHO05D007684 2.3e-36 156.0 148 53.4
Nn2g12713 Nelumbo nucifera HOM05D006247 ORTHO05D007684 4.0e-36 155.2 152 55.3
Rhsim01G0005000 Rhododendron simsii HOM05D006247 ORTHO05D007684 4.0e-36 155.2 149 51.7
MD16G1258400 Malus domestica HOM05D006247 ORTHO05D007684 5.2e-36 154.8 152 52.6
Prupe.1G086300 Prunus persica HOM05D006247 ORTHO05D007684 8.9e-36 154.1 152 52.6
Aqoxy7G02323 Aquilegia oxysepala HOM05D006247 ORTHO05D007684 1.2e-35 153.7 149 52.3
PSO170G0820 Papaver somniferum HOM05D006247 ORTHO05D007684 1.5e-35 153.3 149 51.7
Sabra06G0130300 Salix brachista HOM05D006247 ORTHO05D007684 2.0e-35 152.9 152 53.3
CsaV3_2G008340 Cucumis sativus L. HOM05D006247 ORTHO05D007684 4.4e-35 151.8 152 49.3
Gohir.A08G084700 Gossypium hirsutum HOM05D006247 ORTHO05D007684 4.4e-35 151.8 149 49.7
MELO3C004030.2 Cucumis melo HOM05D006247 ORTHO05D007684 5.8e-35 151.4 152 47.4
Eucgr.C02305 Eucalyptus grandis HOM05D006247 ORTHO05D007684 5.8e-35 151.4 152 52.6
Gorai.004G100200 Gossypium raimondii HOM05D006247 ORTHO05D007684 9.9e-35 150.6 149 49.7
PSO017G3786 Papaver somniferum HOM05D006247 ORTHO05D007684 1.3e-34 150.2 149 49.7
Cpa.g.sc95.55 Carica papaya HOM05D006247 ORTHO05D007684 2.9e-34 149.1 151 54.3
ClCG11G012190 Citrullus lanatus HOM05D006247 ORTHO05D007684 2.9e-34 149.1 152 48.7
Rhsim01G0005100 Rhododendron simsii HOM05D006247 ORTHO05D007684 4.9e-34 148.3 144 52.1
Solyc02g014520.4 Solanum lycopersicum HOM05D006247 ORTHO05D007684 4.9e-34 148.3 148 51.4
Sopen02g003860 Solanum pennellii HOM05D006247 ORTHO05D007684 8.4e-34 147.5 148 50.7
MSTRG.10736 Avicennia marina HOM05D006247 ORTHO05D007684 1.9e-33 146.4 148 53.4
Sed0001652 Sechium edule HOM05D006247 ORTHO05D007684 1.9e-33 146.4 152 52.0
Migut.K00244 Erythranthe guttata HOM05D006247 ORTHO05D007684 2.4e-33 146.0 148 52.7
Gohir.D08G094300 Gossypium hirsutum HOM05D006247 ORTHO05D007684 3.2e-33 145.6 149 48.3
ECA234G4502 Erigeron canadensis HOM05D006247 ORTHO05D007684 7.1e-33 144.4 148 52.0
AUR62021296 Chenopodium quinoa HOM05D006247 ORTHO05D007684 2.7e-32 142.5 152 51.3
AUR62040315 Chenopodium quinoa HOM05D006247 ORTHO05D007684 2.7e-32 142.5 152 51.3
SHI12522 Sapria himalayana HOM05D006247 ORTHO05D007684 3.5e-32 142.1 151 49.0
Hund09028 Selenicereus undatus HOM05D006247 ORTHO05D007684 7.8e-32 141.0 151 47.7
AUR62033213 Chenopodium quinoa HOM05D006247 ORTHO05D007684 1.0e-31 140.6 152 49.3
Sc18g0007480 Simmondsia chinensis HOM05D006247 ORTHO05D007684 1.0e-31 140.6 152 49.3
HanXRQChr10g0308211 Helianthus annuus HOM05D006247 ORTHO05D007684 1.7e-31 139.8 150 52.7
vmacro13121 Vaccinium macrocarpon HOM05D006247 ORTHO05D007684 1.7e-31 139.8 151 51.7
EL10Ac4g10218 Beta vulgaris HOM05D006247 ORTHO05D007684 8.6e-31 137.5 151 51.0
EL10Ac4g10223 Beta vulgaris HOM05D006247 ORTHO05D007684 8.6e-31 137.5 151 51.0
SGA_v2.0_scaffold12G06066 Striga asiatica HOM05D006247 ORTHO05D007684 8.6e-31 137.5 148 49.3
Carub.0003s3308 Capsella rubella HOM05D006247 ORTHO05D007684 7.3e-30 134.4 149 48.3
MBI14_g17363_MAGBIO Magnolia biondii HOM05D006247 ORTHO05D007684 7.3e-30 134.4 148 47.3
THA.LOC104803499 Tarenaya hassleriana HOM05D006247 ORTHO05D007684 4.7e-29 131.7 148 50.0
Lsat_1_v5_gn_5_84660 Lactuca sativa HOM05D006247 ORTHO05D007684 8.1e-29 131.0 148 48.0
FAN17G2058 Fragaria x ananassa HOM05D006247 ORTHO05D007684 2.4e-28 129.4 128 53.1
SalBow1G0102 Salvia bowleyana HOM05D006247 ORTHO05D007684 2.4e-28 129.4 149 47.7
FAN07G1589 Fragaria x ananassa HOM05D006247 ORTHO05D007684 8.9e-28 127.5 127 53.5
TAR383G0012 Trochodendron aralioides HOM05D006247 ORTHO05D007684 7.6e-27 124.4 118 55.1
AL3G53100 Arabidopsis lyrata HOM05D006247 ORTHO05D007684 1.3e-26 123.6 149 45.6
AT2G18850 Arabidopsis thaliana HOM05D006247 ORTHO05D007684 2.9e-26 122.5 149 46.3
Aa31LG8G15940 Aethionema arabicum HOM05D006247 ORTHO05D007684 6.4e-26 121.3 151 45.7
EL10Ac8g18280 Beta vulgaris HOM05D006247 ORTHO05D007684 1.9e-25 119.8 152 46.7
CDE05G3038 Ceratophyllum demersum HOM05D006247 ORTHO05D007684 5.4e-25 118.2 156 42.9
Ah.09g229830 Amaranthus hybridus HOM05D006247 ORTHO05D007684 9.3e-25 117.5 152 43.4
BcaB03g16669 Brassica carinata HOM05D006247 ORTHO05D007684 1.6e-24 116.7 149 42.3
Sp3g32310 Schrenkiella parvula HOM05D006247 ORTHO05D007684 1.6e-24 116.7 149 42.3
A07p01840 Brassica napus HOM05D006247 ORTHO05D007684 4.6e-24 115.2 152 44.1
ATR0580G346 Amborella trichopoda HOM05D006247 ORTHO05D007684 7.8e-24 114.4 151 45.0
DCAR_014704 Daucus carota HOM05D006247 ORTHO05D007684 1.0e-23 114.0 150 45.3
Thhalv10001950m.g Eutrema salsugineum HOM05D006247 ORTHO05D007684 1.3e-23 113.6 149 40.9
C07p03920 Brassica napus HOM05D006247 ORTHO05D007684 5.1e-23 111.7 152 42.8
BraA07t27984Z Brassica rapa HOM05D006247 ORTHO05D007684 5.1e-23 111.7 152 42.8
BolC7t40784H Brassica oleracea HOM05D006247 ORTHO05D007684 6.6e-23 111.3 152 42.1
Peaxi162Scf00113g01819 Petunia axillaris HOM05D006247 ORTHO05D007684 1.5e-22 110.2 123 48.0
CARHR109410 Cardamine hirsuta HOM05D006247 ORTHO05D007684 7.3e-22 107.8 149 43.6
BcaC06g36474 Brassica carinata HOM05D006247 ORTHO05D007684 9.6e-22 107.5 151 41.7
MD13G1255300 Malus domestica HOM05D006247 ORTHO05D007684 1.3e-21 107.1 123 46.3
Os08g0244400 Oryza sativa ssp. japonica HOM05D006247 ORTHO05D007684 2.8e-21 105.9 148 41.2
Zm00001eb414720 Zea mays HOM05D006247 ORTHO05D007684 2.8e-21 105.9 150 42.0
HPP92_015229 Vanilla planifolia HOM05D006247 ORTHO05D007684 1.2e-19 100.5 145 37.2
Nitab4.5_0004255g0020 Nicotiana tabacum HOM05D006247 ORTHO05D007684 1.3e-15 87.0 134 40.3
Nitab4.5_0000018g0090 Nicotiana tabacum HOM05D006247 ORTHO05D007684 2.3e-15 86.3 127 40.2
Mapoly0146s0042 Marchantia polymorpha HOM05D006247 ORTHO05D007684 1.9e-09 66.6 151 30.5
AagrBONN_evm.TU.Sc2ySwM_117.653 Anthoceros agrestis HOM05D006247 ORTHO05D007684 5.5e-09 65.1 74 40.5
Hma1.2p1_3184F.1_g333730 Hydrangea macrophylla HOM05D006247 ORTHO05D007684 3.5e-08 62.4 55 61.8


User provided reference genes

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