Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 2.7e-65 251.9 133 100.0
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 7.4e-55 217.2 135 88.1
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 6.5e-51 204.1 136 81.6
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 2.7e-49 198.7 134 83.6
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 6.7e-40 167.5 135 71.1
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 5.5e-34 147.9 123 68.3
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 9.4e-34 147.1 130 64.6
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 2.7e-33 145.6 124 68.5
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 2.8e-30 135.6 130 61.5
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 4.8e-30 134.8 127 58.3
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 4.5e-28 128.3 130 59.2
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 5.0e-27 124.8 126 62.7
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 1.5e-26 123.2 124 55.6
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.9e-26 122.9 124 56.5
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.5e-26 122.5 124 56.5
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 2.1e-25 119.4 120 57.5
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 3.6e-25 118.6 123 58.5
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 6.1e-25 117.9 131 51.9
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 1.4e-24 116.7 129 56.6
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 2.3e-24 115.9 122 58.2
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.3e-24 115.9 125 55.2
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 6.8e-24 114.4 121 55.4
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 8.8e-24 114.0 127 60.6
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.0e-23 112.8 121 55.4
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 2.0e-23 112.8 134 50.0
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 3.4e-23 112.1 121 56.2
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 3.4e-23 112.1 126 56.3
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 4.4e-23 111.7 120 58.3
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 5.7e-23 111.3 121 56.2
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 5.7e-23 111.3 117 57.3
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 7.5e-23 110.9 128 57.8
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 1.3e-22 110.2 123 59.3
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 1.3e-22 110.2 117 56.4
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 2.2e-22 109.4 125 54.4
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 6.3e-22 107.8 132 51.5
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 6.3e-22 107.8 129 58.1
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 6.3e-22 107.8 125 54.4
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 8.3e-22 107.5 118 54.2
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 8.3e-22 107.5 125 50.4
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 1.8e-21 106.3 125 52.8
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.4e-21 105.9 127 52.0
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 5.4e-21 104.8 130 50.0
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 7.0e-21 104.4 123 57.7
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 9.1e-21 104.0 130 50.0
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.6e-20 103.2 130 49.2
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.6e-20 103.2 130 49.2
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 1.6e-20 103.2 130 54.6
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 2.7e-20 102.4 128 52.3
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 7.7e-20 100.9 127 52.8
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 7.7e-20 100.9 116 50.9
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 1.0e-19 100.5 115 52.2
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.0e-19 100.5 125 50.4
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.0e-19 100.5 125 50.4
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 2.3e-19 99.4 118 46.6
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 2.9e-19 99.0 119 51.3
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 3.8e-19 98.6 119 52.1
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 3.8e-19 98.6 117 51.3
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 5.0e-19 98.2 125 50.4
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.1e-18 97.1 118 51.7
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.1e-18 97.1 100 59.0
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 1.5e-18 96.7 118 45.8
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.9e-18 96.3 119 47.1
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 2.5e-18 95.9 116 50.9
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 4.2e-18 95.1 126 50.0
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 9.5e-18 94.0 114 47.4
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 1.2e-17 93.6 127 50.4
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.8e-17 92.4 100 58.0
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 3.6e-17 92.0 135 45.2
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 6.1e-17 91.3 121 46.3
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 8.0e-17 90.9 126 47.6
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 8.0e-17 90.9 117 50.4
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.0e-16 90.5 123 47.2
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.3e-16 89.4 126 46.8
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 2.3e-16 89.4 90 58.9
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 2.3e-16 89.4 123 48.8
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 2.3e-16 89.4 117 50.4
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 4.0e-16 88.6 123 49.6
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 4.0e-16 88.6 143 43.4
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 5.2e-16 88.2 113 47.8
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 6.8e-16 87.8 116 47.4
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 8.9e-16 87.4 114 44.7
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 8.9e-16 87.4 115 46.1
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 8.9e-16 87.4 115 46.1
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.2e-15 87.0 122 45.1
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 1.2e-15 87.0 155 42.6
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 1.5e-15 86.7 120 45.8
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.5e-15 86.7 120 49.2
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 2.0e-15 86.3 121 47.1
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 2.0e-15 86.3 108 47.2
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 2.0e-15 86.3 111 46.8
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 2.0e-15 86.3 112 46.4
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 2.6e-15 85.9 112 48.2
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 2.6e-15 85.9 119 45.4
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.6e-15 85.9 119 45.4
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.6e-15 85.9 121 44.6
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 2.6e-15 85.9 124 46.8
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 3.4e-15 85.5 128 46.9
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 3.4e-15 85.5 121 43.8
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 4.4e-15 85.1 155 41.3
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 5.7e-15 84.7 125 45.6
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 5.7e-15 84.7 108 47.2
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 7.5e-15 84.3 122 47.5
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 9.8e-15 84.0 129 44.2
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 1.7e-14 83.2 126 41.3
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 1.7e-14 83.2 119 43.7
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.2e-14 82.8 123 48.0
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.2e-14 82.8 123 48.0
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 2.2e-14 82.8 128 45.3
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 2.2e-14 82.8 122 47.5
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 2.8e-14 82.4 121 43.8
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 2.8e-14 82.4 76 55.3
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 4.9e-14 81.6 108 47.2
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 6.3e-14 81.3 130 43.1
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 6.3e-14 81.3 123 44.7
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 6.3e-14 81.3 128 46.9
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 8.3e-14 80.9 121 43.8
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 1.1e-13 80.5 131 47.3
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 1.4e-13 80.1 110 44.5
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 1.8e-13 79.7 122 47.5
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 1.8e-13 79.7 122 47.5
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 1.8e-13 79.7 136 44.9
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 4.1e-13 78.6 106 45.3
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 9.2e-13 77.4 136 39.7
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 9.2e-13 77.4 122 43.4
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 1.2e-12 77.0 123 45.5
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 1.2e-12 77.0 122 47.5
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 1.2e-12 77.0 122 47.5
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.2e-12 77.0 124 41.9
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.5e-12 75.5 124 44.4
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.5e-12 75.5 124 44.4
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 5.9e-12 74.7 121 43.0
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 1.0e-11 73.9 99 48.5
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.0e-11 73.9 115 41.7
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 1.3e-11 73.6 119 48.7
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.7e-11 73.2 137 38.0
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 2.3e-11 72.8 141 36.2
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 3.9e-11 72.0 127 40.9
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 1.1e-10 70.5 83 49.4
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 1.1e-10 70.5 83 49.4
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 1.1e-10 70.5 117 44.4
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 4.3e-10 68.6 101 44.6
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 5.6e-10 68.2 128 42.2
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 7.3e-10 67.8 110 42.7
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 7.3e-10 67.8 85 48.2
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 9.5e-10 67.4 122 39.3
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 9.5e-10 67.4 118 42.4
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 1.6e-09 66.6 139 34.5
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 1.6e-09 66.6 125 40.0
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 1.4e-08 63.5 156 32.1
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 1.4e-08 63.5 131 38.2
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 3.1e-08 62.4 108 41.7
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 5.2e-08 61.6 153 34.6
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 5.2e-08 61.6 113 44.2
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 5.2e-08 61.6 55 60.0
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 6.8e-08 61.2 129 39.5
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 5.8e-07 58.2 50 62.0
Glyma.04G075600 Glycine max HOM05D021496 ORTHO05D022761 4.9e-06 55.1 108 38.9
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 8.3e-06 54.3 127 36.2


User provided reference genes

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