Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G093000 Glycine max HOM05D006491 ORTHO05D008412 2.5e-164 582.0 286 100.0
VMungo1215G2097 Vigna mungo HOM05D006491 ORTHO05D008412 1.2e-137 493.4 271 88.2
Phvul.003G149900 Phaseolus vulgaris HOM05D006491 ORTHO05D008412 2.6e-137 492.3 271 88.2
Glyma.17G067500 Glycine max HOM05D006491 ORTHO05D008412 7.5e-129 464.2 269 84.8
TPR.G5304 Trifolium pratense HOM05D006491 ORTHO05D008412 1.1e-124 450.3 275 81.5
Ca_21191_v3 Cicer arietinum L. HOM05D006491 ORTHO05D008412 1.6e-123 446.4 271 80.8
Medtr4g129150 Medicago truncatula HOM05D006491 ORTHO05D008412 4.7e-123 444.9 272 81.6
Lalb_Chr13g0300441 Lupinus albus HOM05D006491 ORTHO05D008412 6.4e-120 434.5 262 82.4
arahy.Tifrunner.gnm1.ann1.E3AGAX Arachis hypogaea HOM05D006491 ORTHO05D008412 9.2e-119 430.6 264 81.8
Lj4g0007651 Lotus japonicus HOM05D006491 ORTHO05D008412 2.7e-118 429.1 266 78.6
arahy.Tifrunner.gnm1.ann1.1P8XK5 Arachis hypogaea HOM05D006491 ORTHO05D008412 7.8e-118 427.6 264 80.7
Psat4g010880 Pisum sativum HOM05D006491 ORTHO05D008412 5.0e-117 424.9 268 75.7
Dinv41291 Davidia involucrata HOM05D006491 ORTHO05D008412 8.6e-109 397.5 264 73.1
Duzib150G0568 Durio zibethinus HOM05D006491 ORTHO05D008412 1.9e-108 396.4 258 73.6
Potri.018G096900 Populus trichocarpa HOM05D006491 ORTHO05D008412 2.5e-108 396.0 272 72.1
Gohir.D08G096700 Gossypium hirsutum HOM05D006491 ORTHO05D008412 1.1e-106 390.6 253 75.5
Gorai.004G103700 Gossypium raimondii HOM05D006491 ORTHO05D008412 1.1e-106 390.6 253 75.5
CiPaw.07G187800 Carya illinoinensis HOM05D006491 ORTHO05D008412 8.9e-106 387.5 262 72.9
Sabra18G0084000 Salix brachista HOM05D006491 ORTHO05D008412 2.0e-105 386.3 273 71.1
Prupe.1G095000 Prunus persica HOM05D006491 ORTHO05D008412 5.8e-105 384.8 268 71.3
GSVIVG01029103001 Vitis vinifera HOM05D006491 ORTHO05D008412 7.5e-105 384.4 265 69.8
Gohir.A08G070300 Gossypium hirsutum HOM05D006491 ORTHO05D008412 4.9e-104 381.7 246 76.0
TWI63G0546 Tripterygium wilfordii HOM05D006491 ORTHO05D008412 1.1e-103 380.6 263 72.2
TAR383G0527 Trochodendron aralioides HOM05D006491 ORTHO05D008412 1.1e-103 380.6 266 69.5
FAN12G3371 Fragaria x ananassa HOM05D006491 ORTHO05D008412 1.4e-103 380.2 269 69.5
FAN22G1104 Fragaria x ananassa HOM05D006491 ORTHO05D008412 1.4e-103 380.2 269 69.5
MD13G1262500 Malus domestica HOM05D006491 ORTHO05D008412 1.9e-103 379.8 265 71.3
Actinidia17333 Actinidia chinensis HOM05D006491 ORTHO05D008412 5.4e-103 378.3 278 68.7
RcHm_v2.0_Chr4g0404161 Rosa chinensis HOM05D006491 ORTHO05D008412 5.4e-103 378.3 245 75.1
Actinidia17330 Actinidia chinensis HOM05D006491 ORTHO05D008412 1.6e-102 376.7 274 69.0
Nn2g14424 Nelumbo nucifera HOM05D006491 ORTHO05D008412 1.6e-102 376.7 265 69.8
Manes.14G150100 Manihot esculenta HOM05D006491 ORTHO05D008412 2.1e-102 376.3 265 69.1
COL.COLO4_16079 Corchorus olitorius HOM05D006491 ORTHO05D008412 3.5e-102 375.6 244 74.2
QL02p096111 Quercus lobata HOM05D006491 ORTHO05D008412 1.0e-101 374.0 246 72.8
Aqoxy7G03183 Aquilegia oxysepala HOM05D006491 ORTHO05D008412 1.7e-101 373.2 271 68.6
CSS0049223 Camellia sinensis var. sinensis HOM05D006491 ORTHO05D008412 2.3e-101 372.9 266 71.1
PGR142G3664 Punica granatum HOM05D006491 ORTHO05D008412 5.1e-101 371.7 263 70.3
Atru.chr7.558 Acer truncatum HOM05D006491 ORTHO05D008412 7.3e-100 367.9 266 70.7
Ciclev10008637m.g Citrus clementina HOM05D006491 ORTHO05D008412 9.5e-100 367.5 255 72.9
Thecc.09G163600 Theobroma cacao HOM05D006491 ORTHO05D008412 2.8e-99 365.9 239 74.1
Sc14g0001140 Simmondsia chinensis HOM05D006491 ORTHO05D008412 1.8e-98 363.2 232 75.0
MSTRG.10725 Avicennia marina HOM05D006491 ORTHO05D008412 5.2e-98 361.7 272 66.2
Rhsim03G0262200 Rhododendron simsii HOM05D006491 ORTHO05D008412 8.9e-98 360.9 263 66.9
Haze_22140 Corylus avellana HOM05D006491 ORTHO05D008412 1.2e-97 360.5 252 70.6
MELO3C017512.2 Cucumis melo HOM05D006491 ORTHO05D008412 2.6e-97 359.4 264 67.0
ECA236G3989 Erigeron canadensis HOM05D006491 ORTHO05D008412 2.6e-97 359.4 269 68.0
ClCG06G012970 Citrullus lanatus HOM05D006491 ORTHO05D008412 7.6e-97 357.8 265 66.8
EL10Ac8g18256 Beta vulgaris HOM05D006491 ORTHO05D008412 1.3e-96 357.1 261 68.2
CsaV3_1G029540 Cucumis sativus L. HOM05D006491 ORTHO05D008412 1.7e-96 356.7 265 67.2
Ah.09g229650 Amaranthus hybridus HOM05D006491 ORTHO05D008412 4.9e-96 355.1 265 68.3
Lsat_1_v5_gn_8_65441 Lactuca sativa HOM05D006491 ORTHO05D008412 3.2e-95 352.4 266 65.4
Cpa.g.sc450.5 Carica papaya HOM05D006491 ORTHO05D008412 5.4e-95 351.7 302 58.3
FvH4_4g08360 Fragaria vesca HOM05D006491 ORTHO05D008412 7.1e-95 351.3 245 70.2
HanXRQChr05g0136551 Helianthus annuus HOM05D006491 ORTHO05D008412 7.1e-95 351.3 273 65.6
CANSAT11G0137 Cannabis sativa HOM05D006491 ORTHO05D008412 3.5e-94 349.0 255 66.3
THA.LOC104817809 Tarenaya hassleriana HOM05D006491 ORTHO05D008412 3.5e-94 349.0 233 71.7
Nitab4.5_0000593g0170 Nicotiana tabacum HOM05D006491 ORTHO05D008412 1.7e-93 346.7 263 66.9
Sp7g25960 Schrenkiella parvula HOM05D006491 ORTHO05D008412 5.1e-93 345.1 264 65.9
Thhalv10025588m.g Eutrema salsugineum HOM05D006491 ORTHO05D008412 6.6e-93 344.7 264 65.2
BraA08t33984Z Brassica rapa HOM05D006491 ORTHO05D008412 8.6e-93 344.4 262 66.0
Nitab4.5_0003408g0120 Nicotiana tabacum HOM05D006491 ORTHO05D008412 1.1e-92 344.0 263 66.2
Carub.0007s1278 Capsella rubella HOM05D006491 ORTHO05D008412 1.9e-92 343.2 266 63.9
A08p20250 Brassica napus HOM05D006491 ORTHO05D008412 3.3e-92 342.4 262 65.6
Oeu043515.2 Olea europaea HOM05D006491 ORTHO05D008412 3.3e-92 342.4 331 55.9
DCAR_017948 Daucus carota HOM05D006491 ORTHO05D008412 4.3e-92 342.0 239 69.5
CAN.G135.50 Capsicum annuum HOM05D006491 ORTHO05D008412 7.3e-92 341.3 264 65.2
PGSC0003DMG401027355 Solanum tuberosum HOM05D006491 ORTHO05D008412 7.3e-92 341.3 263 64.3
BcaC07g38308 Brassica carinata HOM05D006491 ORTHO05D008412 1.2e-91 340.5 245 68.6
C08p10580 Brassica napus HOM05D006491 ORTHO05D008412 1.2e-91 340.5 245 68.6
CARHR235700 Cardamine hirsuta HOM05D006491 ORTHO05D008412 2.1e-91 339.7 266 63.9
BolC8t48733H Brassica oleracea HOM05D006491 ORTHO05D008412 2.8e-91 339.3 245 68.2
Solyc11g007750.3 Solanum lycopersicum HOM05D006491 ORTHO05D008412 6.2e-91 338.2 263 63.1
AL7G24610 Arabidopsis lyrata HOM05D006491 ORTHO05D008412 8.1e-91 337.8 264 63.6
Sopen11g003610 Solanum pennellii HOM05D006491 ORTHO05D008412 1.4e-90 337.0 263 63.5
Aa31LG3G170 Aethionema arabicum HOM05D006491 ORTHO05D008412 1.8e-90 336.7 262 62.6
Migut.K00266 Erythranthe guttata HOM05D006491 ORTHO05D008412 4.0e-90 335.5 269 64.3
PSO063G6711 Papaver somniferum HOM05D006491 ORTHO05D008412 1.5e-89 333.6 241 67.2
MBI14_g24284_MAGBIO Magnolia biondii HOM05D006491 ORTHO05D008412 2.0e-89 333.2 267 62.9
PSO782G2884 Papaver somniferum HOM05D006491 ORTHO05D008412 5.8e-89 331.6 243 66.7
Hma1.2p1_0921F.1_g236670 Hydrangea macrophylla HOM05D006491 ORTHO05D008412 9.9e-89 330.9 315 55.2
BcaB03g12553 Brassica carinata HOM05D006491 ORTHO05D008412 4.9e-88 328.6 228 70.2
vmacro06036 Vaccinium macrocarpon HOM05D006491 ORTHO05D008412 4.2e-87 325.5 282 58.2
ATR0580G190 Amborella trichopoda HOM05D006491 ORTHO05D008412 9.3e-87 324.3 260 62.3
Actinidia14076 Actinidia chinensis HOM05D006491 ORTHO05D008412 3.5e-86 322.4 243 67.5
unitig_62.g23494 Utricularia gibba HOM05D006491 ORTHO05D008412 3.5e-86 322.4 239 66.1
Os09g0428900 Oryza sativa ssp. japonica HOM05D006491 ORTHO05D008412 8.7e-85 317.8 266 60.2
Zm00001eb313540 Zea mays HOM05D006491 ORTHO05D008412 8.7e-85 317.8 245 64.9
Cfa013536 Carpinus fangiana HOM05D006491 ORTHO05D008412 1.3e-83 313.9 179 80.4
Actinidia25168 Actinidia chinensis HOM05D006491 ORTHO05D008412 9.0e-82 307.8 183 77.6
Cc06_g13780 Coffea canephora HOM05D006491 ORTHO05D008412 6.4e-80 301.6 278 57.6
Eucgr.C00197 Eucalyptus grandis HOM05D006491 ORTHO05D008412 4.2e-79 298.9 182 76.4
Hund26385 Selenicereus undatus HOM05D006491 ORTHO05D008412 1.6e-78 297.0 258 60.9
FAN07G0899 Fragaria x ananassa HOM05D006491 ORTHO05D008412 4.6e-78 295.4 269 58.7
Lj9A730G48 Lonicera japonica HOM05D006491 ORTHO05D008412 2.3e-77 293.1 176 76.7
AT4G28020 Arabidopsis thaliana HOM05D006491 ORTHO05D008412 5.1e-77 292.0 179 76.0
AUR62040289 Chenopodium quinoa HOM05D006491 ORTHO05D008412 5.6e-76 288.5 232 63.4
Peaxi162Scf00113g00085 Petunia axillaris HOM05D006491 ORTHO05D008412 4.8e-75 285.4 166 78.9
AagrBONN_evm.TU.Sc2ySwM_344.1093 Anthoceros agrestis HOM05D006491 ORTHO05D008412 1.4e-74 283.9 245 58.0
AUR62039980 Chenopodium quinoa HOM05D006491 ORTHO05D008412 6.9e-74 281.6 232 62.1
Pp3c9_21480 Physcomitrium patens HOM05D006491 ORTHO05D008412 2.0e-73 280.0 272 50.7
SMO358G0273 Selaginella moellendorffii HOM05D006491 ORTHO05D008412 5.5e-71 271.9 263 53.2
Sed0015960 Sechium edule HOM05D006491 ORTHO05D008412 8.7e-69 264.6 167 73.7
Mapoly0045s0079 Marchantia polymorpha HOM05D006491 ORTHO05D008412 5.8e-65 251.9 201 57.2
arahy.Tifrunner.gnm1.ann1.6S8GSB Arachis hypogaea HOM05D006491 ORTHO05D008412 4.9e-64 248.8 205 65.9
Peaxi162Scf00532g00051 Petunia axillaris HOM05D006491 ORTHO05D008412 7.9e-62 241.5 225 56.4
CDE05G0295 Ceratophyllum demersum HOM05D006491 ORTHO05D008412 1.5e-52 210.7 180 58.3
SGA_v2.0_scaffold242G44263 Striga asiatica HOM05D006491 ORTHO05D008412 1.0e-48 198.0 179 58.1
Cre14.g613450 Chlamydomonas reinhardtii HOM05D006491 ORTHO05D008412 1.3e-48 197.6 187 51.9
SEGI_13660 Sequoiadendron giganteum HOM05D006491 ORTHO05D008412 1.3e-48 197.6 165 60.0
MELO3C026731.2 Cucumis melo HOM05D006491 ORTHO05D008412 1.4e-39 167.5 164 54.3
PRCOL_00001913 Prasinoderma coloniale HOM05D006491 ORTHO05D008412 1.9e-39 167.2 205 46.3
MCO01G751 Micromonas commoda HOM05D006491 ORTHO05D008412 3.6e-38 162.9 296 35.8
MCO14G289 Micromonas commoda HOM05D006491 ORTHO05D008412 1.5e-36 157.5 192 45.3
SGA_v2.0_scaffold242G44258 Striga asiatica HOM05D006491 ORTHO05D008412 7.7e-25 118.6 99 63.6
SEGI_21199 Sequoiadendron giganteum HOM05D006491 ORTHO05D008412 4.2e-15 86.3 65 58.5
GSVIVG01029402001 Vitis vinifera HOM05D006491 ORTHO05D008412 2.0e-12 77.4 55 65.5
Hma1.2p1_1576F.1_g291650 Hydrangea macrophylla HOM05D006491 ORTHO05D008412 2.7e-09 67.0 48 58.3
Nn2g16007 Nelumbo nucifera HOM05D006491 ORTHO05D008412 2.8e-06 57.0 62 51.6


User provided reference genes

Program Settings