Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 4.5e-219 764.2 367 100.0
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 2.0e-187 659.1 359 87.7
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 1.2e-182 643.3 359 84.4
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 6.3e-181 637.5 360 83.9
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 5.9e-179 630.9 360 82.5
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 1.0e-178 630.2 339 88.5
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 8.6e-178 627.1 361 82.3
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 5.6e-177 624.4 362 82.3
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 2.9e-173 612.1 370 80.5
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 3.5e-171 605.1 325 85.5
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 3.2e-164 582.0 352 79.3
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 1.8e-159 566.2 314 81.2
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 3.1e-159 565.5 358 74.6
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 2.6e-158 562.4 318 81.1
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 9.8e-158 560.5 350 75.4
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 2.4e-156 555.8 308 83.8
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 2.4e-156 555.8 314 81.2
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 4.1e-156 555.1 319 79.3
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 7.1e-156 554.3 350 75.1
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 6.0e-155 551.2 330 76.7
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 7.8e-155 550.8 329 77.2
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 7.8e-155 550.8 314 80.9
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 1.0e-154 550.4 323 78.9
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 3.9e-154 548.5 334 76.3
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 1.2e-152 543.5 357 72.3
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 2.1e-152 542.7 339 72.9
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 2.8e-152 542.3 335 75.2
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 6.2e-152 541.2 321 77.9
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 8.1e-152 540.8 348 73.6
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.8e-151 539.7 319 77.1
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 1.8e-151 539.7 358 72.1
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 2.3e-151 539.3 324 76.2
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 3.1e-151 538.9 357 71.1
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 4.0e-151 538.5 319 76.8
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 1.2e-150 537.0 329 76.3
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 1.2e-150 537.0 319 76.8
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 1.2e-150 537.0 313 75.7
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 2.6e-150 535.8 317 77.3
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 3.4e-150 535.4 319 76.8
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 7.6e-150 534.3 341 73.3
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 7.6e-150 534.3 319 76.8
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 9.9e-150 533.9 325 78.2
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 9.9e-150 533.9 325 78.2
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 9.9e-150 533.9 325 75.7
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.3e-149 533.5 329 75.7
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 2.2e-149 532.7 319 77.1
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 2.9e-149 532.3 319 76.8
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 2.9e-149 532.3 319 76.5
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 3.8e-149 531.9 319 75.5
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 6.4e-149 531.2 319 75.9
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 1.9e-148 529.6 314 79.0
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 2.4e-148 529.3 313 78.0
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 3.2e-148 528.9 355 70.4
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 3.2e-148 528.9 310 77.7
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 3.2e-148 528.9 316 75.6
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 4.1e-148 528.5 321 76.3
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 9.2e-148 527.3 325 75.4
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 1.2e-147 526.9 319 74.9
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 1.2e-147 526.9 319 76.2
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 1.6e-147 526.6 320 75.9
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 3.0e-146 522.3 341 71.8
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 3.0e-146 522.3 312 76.3
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 5.1e-146 521.5 312 77.2
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 6.6e-146 521.2 327 73.1
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 6.6e-146 521.2 321 74.8
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 1.1e-145 520.4 315 75.6
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 2.5e-145 519.2 315 75.9
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 3.3e-145 518.8 319 76.2
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 3.3e-145 518.8 312 76.3
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 1.6e-144 516.5 347 70.9
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 1.6e-144 516.5 315 75.6
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 2.1e-144 516.2 313 78.3
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 2.1e-144 516.2 313 76.0
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 2.1e-144 516.2 311 74.6
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 8.1e-144 514.2 323 73.1
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 1.1e-143 513.8 310 76.1
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 3.1e-143 512.3 306 77.1
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 5.2e-143 511.5 308 76.3
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 5.2e-143 511.5 310 75.8
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 1.2e-142 510.4 309 77.0
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 2.6e-142 509.2 309 76.7
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 2.6e-142 509.2 309 76.7
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 1.3e-141 506.9 309 76.1
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 1.7e-141 506.5 308 76.0
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 3.8e-141 505.4 307 76.2
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 4.9e-141 505.0 309 76.1
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 4.9e-141 505.0 309 76.1
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 6.4e-141 504.6 354 68.9
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 6.4e-141 504.6 312 74.0
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 1.4e-140 503.4 310 74.2
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 2.4e-140 502.7 309 76.1
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 4.2e-140 501.9 309 75.7
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 1.1e-137 493.8 311 72.7
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 9.6e-137 490.7 310 73.2
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 4.8e-136 488.4 343 67.6
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 1.1e-135 487.3 326 70.9
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 4.2e-132 475.3 345 67.5
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 5.4e-132 474.9 305 73.1
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 4.6e-131 471.9 302 73.2
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 7.9e-131 471.1 302 72.5
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 2.3e-130 469.5 308 69.5
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 2.9e-125 452.6 319 68.7
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 2.9e-125 452.6 320 69.1
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 9.3e-124 447.6 306 71.2
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 4.3e-121 438.7 306 66.3
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 8.2e-120 434.5 313 63.3
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 4.0e-119 432.2 340 62.4
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 5.3e-119 431.8 341 58.9
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 1.2e-118 430.6 374 59.4
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 1.2e-118 430.6 309 67.0
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 2.0e-118 429.9 344 61.9
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 7.6e-118 427.9 313 65.8
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 7.6e-118 427.9 276 70.7
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.0e-117 427.6 448 50.9
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 3.5e-115 419.1 304 63.2
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 1.9e-113 413.3 284 66.5
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 1.6e-112 410.2 309 59.9
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 4.8e-112 408.7 237 78.1
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 1.4e-108 397.1 312 60.6
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 6.9e-95 351.7 210 76.7
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 1.0e-90 337.8 199 77.4
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 8.8e-90 334.7 201 76.6
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 3.7e-88 329.3 251 63.7
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 1.1e-87 327.8 214 72.0
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 4.2e-84 315.8 176 79.5
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 5.5e-84 315.5 184 77.7
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 8.8e-82 308.1 304 50.3
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 3.3e-81 306.2 174 78.7
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 1.1e-68 264.6 312 49.4
EL10Ac7g17876 Beta vulgaris HOM05D005241 ORTHO05D005862 6.4e-48 195.7 208 46.6
MELO3C017513.2 Cucumis melo HOM05D005241 ORTHO05D005862 5.6e-44 182.6 139 64.7
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 1.1e-42 178.3 87 90.8
MBI18_g46216_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 9.2e-39 165.2 99 77.8
Hund09002 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.6e-33 147.1 96 69.8
Nn8g41235 Nelumbo nucifera HOM05D005241 ORTHO05D005862 7.8e-30 135.6 78 76.9
FAN12G2859 Fragaria x ananassa HOM05D005241 ORTHO05D005862 4.7e-27 126.3 68 82.4
Sc08g0005370 Simmondsia chinensis HOM05D005241 ORTHO05D005862 2.4e-26 124.0 79 73.4
SHI03002 Sapria himalayana HOM05D005241 ORTHO05D005862 5.2e-26 122.9 311 29.6
MBI18_g29570_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.5e-25 121.3 89 64.0
AagrBONN_evm.TU.Sc2ySwM_228.5641 Anthoceros agrestis HOM05D005241 ORTHO05D005862 4.4e-25 119.8 311 28.9
Peaxi162Scf00014g00192 Petunia axillaris HOM05D005241 ORTHO05D005862 9.6e-20 102.1 62 79.0
arahy.Tifrunner.gnm1.ann1.6LUE8P Arachis hypogaea HOM05D005241 ORTHO05D005862 6.4e-16 89.4 92 58.7
CBR_g30152 Chara braunii HOM05D010403 ORTHO05D005862 2.1e-14 84.3 161 32.3
CBR_g30241 Chara braunii HOM05D005241 ORTHO05D005862 2.8e-11 73.9 318 24.2
MBI18_g11928_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 3.1e-10 70.5 47 74.5
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 2.9e-08 63.9 41 65.9
MBI19_g36862_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 6.4e-08 62.8 50 52.0
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 2.1e-06 57.8 40 70.0


User provided reference genes

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