Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 5.8e-109 397.5 192 100.0
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 3.0e-49 199.1 194 56.2
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 1.2e-42 177.2 117 76.1
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 3.0e-33 146.0 246 41.5
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 1.6e-29 133.7 214 39.7
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 7.7e-29 131.3 159 48.4
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 2.2e-28 129.8 215 41.4
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 2.9e-28 129.4 236 37.3
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 2.9e-28 129.4 209 37.8
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 3.8e-28 129.0 192 42.7
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 5.0e-28 128.6 204 41.7
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 5.0e-28 128.6 171 45.0
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 2.5e-27 126.3 206 41.3
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 5.5e-27 125.2 184 46.2
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 7.2e-27 124.8 206 44.2
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 1.2e-26 124.0 199 40.2
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 2.1e-26 123.2 254 35.8
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 3.6e-26 122.5 204 41.2
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 1.0e-25 120.9 166 47.0
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.0e-25 120.9 178 43.3
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 1.8e-25 120.2 207 39.1
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 3.0e-25 119.4 184 41.3
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 4.0e-25 119.0 207 38.6
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 5.2e-25 118.6 176 42.0
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 6.8e-25 118.2 185 41.1
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 3.4e-24 115.9 207 37.2
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 5.7e-24 115.2 228 38.6
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.7e-23 112.5 176 40.3
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 8.3e-23 111.3 109 56.0
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 8.3e-23 111.3 109 56.0
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 8.3e-23 111.3 87 65.5
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 1.8e-22 110.2 158 43.0
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 2.4e-22 109.8 87 63.2
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 3.1e-22 109.4 108 52.8
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 3.1e-22 109.4 191 40.3
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 4.1e-22 109.0 176 39.8
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 4.1e-22 109.0 176 39.8
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 4.1e-22 109.0 176 39.8
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 5.4e-22 108.6 84 60.7
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 5.4e-22 108.6 84 60.7
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 9.1e-22 107.8 191 39.3
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 1.2e-21 107.5 109 54.1
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 1.2e-21 107.5 109 54.1
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 1.2e-21 107.5 109 54.1
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 1.6e-21 107.1 96 59.4
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 2.0e-21 106.7 84 59.5
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 2.7e-21 106.3 106 51.9
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 5.9e-21 105.1 92 59.8
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 7.7e-21 104.8 75 69.3
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 1.0e-20 104.4 84 59.5
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 1.3e-20 104.0 164 39.6
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 1.7e-20 103.6 84 58.3
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 1.7e-20 103.6 104 53.8
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 1.7e-20 103.6 104 53.8
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 1.7e-20 103.6 84 59.5
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 1.7e-20 103.6 98 56.1
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 1.7e-20 103.6 66 69.7
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 1.7e-20 103.6 97 55.7
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 1.7e-20 103.6 86 60.5
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 2.3e-20 103.2 184 39.7
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 5.0e-20 102.1 113 49.6
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 5.0e-20 102.1 113 49.6
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 8.6e-20 101.3 72 65.3
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 8.6e-20 101.3 69 68.1
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.1e-19 100.9 115 51.3
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 1.1e-19 100.9 187 35.8
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 1.5e-19 100.5 110 50.9
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 1.5e-19 100.5 75 66.7
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 1.9e-19 100.1 80 60.0
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.9e-19 100.1 134 45.5
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 3.3e-19 99.4 73 64.4
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 3.3e-19 99.4 76 64.5
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.2e-19 99.0 114 53.5
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 9.5e-19 97.8 80 60.0
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 1.6e-18 97.1 64 71.9
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 1.6e-18 97.1 91 53.8
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 2.1e-18 96.7 145 40.0
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 4.7e-18 95.5 84 56.0
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 6.1e-18 95.1 68 66.2
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 1.8e-17 93.6 200 38.0
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 2.3e-17 93.2 186 34.4
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 3.0e-17 92.8 147 40.1
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 4.0e-17 92.4 81 56.8
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 4.0e-17 92.4 81 56.8
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 5.2e-17 92.0 63 63.5
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.2e-16 90.9 78 59.0
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.2e-16 90.9 78 59.0
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.2e-16 90.9 78 59.0
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 1.2e-16 90.9 61 68.9
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.0e-16 90.1 75 57.3
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 5.7e-16 88.6 64 65.6
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 5.7e-16 88.6 79 60.8
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 7.5e-16 88.2 75 54.7
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 9.8e-16 87.8 82 47.6
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 9.8e-16 87.8 75 56.0
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 9.8e-16 87.8 81 55.6
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 2.2e-15 86.7 173 37.0
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 3.7e-15 85.9 72 55.6
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 4.9e-15 85.5 75 58.7
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 2.4e-14 83.2 76 56.6
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 4.1e-14 82.4 60 61.7
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 9.2e-14 81.3 71 56.3
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.2e-13 80.9 94 46.8
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 1.6e-13 80.5 60 65.0
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.5e-13 79.3 78 53.8
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 4.5e-13 79.0 80 53.8
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 5.9e-13 78.6 71 53.5
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 7.8e-13 78.2 78 53.8
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 7.8e-13 78.2 78 52.6
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 1.3e-12 77.4 78 52.6
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 1.7e-12 77.0 71 53.5
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 2.3e-12 76.6 74 48.6
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 3.8e-12 75.9 88 46.6
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 5.0e-12 75.5 120 38.3
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 6.6e-12 75.1 105 41.9
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 8.6e-12 74.7 94 40.4
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 1.5e-11 73.9 70 57.1
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 1.9e-11 73.6 89 42.7
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 1.9e-11 73.6 89 42.7
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 2.5e-11 73.2 53 64.2
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 4.3e-11 72.4 109 42.2
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 1.6e-10 70.5 70 47.1
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 2.8e-10 69.7 50 64.0
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 3.6e-10 69.3 90 45.6
SEGI_20648 Sequoiadendron giganteum HOM05D004520 ORTHO05D005520 3.6e-10 69.3 50 60.0
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 4.7e-10 68.9 60 53.3
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 6.1e-10 68.6 72 50.0
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 8.0e-10 68.2 60 53.3
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 8.0e-10 68.2 60 53.3
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 3.1e-09 66.2 41 70.7
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 8.9e-09 64.7 40 67.5
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 8.9e-09 64.7 77 48.1
SalBow7G1906 Salvia bowleyana HOM05D004520 ORTHO05D005520 7.5e-08 61.6 59 47.5
Sp1g19610 Schrenkiella parvula HOM05D004520 ORTHO05D005520 7.5e-08 61.6 69 44.9
TAR381G0361 Trochodendron aralioides HOM05D004520 ORTHO05D005520 7.5e-08 61.6 33 81.8
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 2.2e-07 60.1 62 48.4
Lj4P108T23 Lonicera japonica HOM05D004520 ORTHO05D005520 4.9e-07 58.9 65 49.2
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 6.4e-07 58.5 99 38.4
THA.LOC104816921 Tarenaya hassleriana HOM05D004520 ORTHO05D005520 6.4e-07 58.5 41 63.4
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 8.3e-07 58.2 73 46.6
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 1.1e-06 57.8 61 49.2
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 1.1e-06 57.8 61 49.2
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 1.4e-06 57.4 61 47.5
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 2.4e-06 56.6 97 39.2
Atru.chr3.816 Acer truncatum HOM05D004520 ORTHO05D005520 3.2e-06 56.2 89 42.7
Oeu061390.1 Olea europaea HOM05D004520 ORTHO05D005520 4.1e-06 55.8 43 58.1
Lsat_1_v5_gn_9_44740 Lactuca sativa HOM05D004520 ORTHO05D005520 7.0e-06 55.1 110 31.8


User provided reference genes

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