Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 2.9e-106 388.7 205 100.0
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 1.8e-84 316.2 190 92.6
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 1.4e-52 210.3 214 59.3
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 2.0e-51 206.5 212 59.9
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 3.8e-50 202.2 226 61.9
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 3.8e-50 202.2 211 57.8
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 5.0e-50 201.8 215 60.9
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 5.0e-50 201.8 209 56.5
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 4.6e-48 195.3 232 56.5
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 3.0e-47 192.6 213 57.7
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 9.7e-46 187.6 205 51.2
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 3.7e-45 185.7 226 58.8
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 1.4e-44 183.7 212 51.4
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 9.1e-44 181.0 212 52.8
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 3.4e-43 179.1 217 58.1
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 1.0e-42 177.6 240 52.1
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.0e-42 177.6 206 53.9
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 2.2e-42 176.4 205 46.8
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 1.1e-41 174.1 239 51.0
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 2.5e-41 172.9 197 51.3
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 4.2e-41 172.2 208 51.0
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 1.4e-39 167.2 206 50.0
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 3.0e-39 166.0 212 49.5
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 3.0e-39 166.0 208 49.0
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 2.0e-38 163.3 203 49.3
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 3.3e-38 162.5 218 45.9
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 7.4e-38 161.4 219 49.8
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 1.3e-37 160.6 203 52.2
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.7e-37 160.2 200 47.5
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 3.7e-37 159.1 203 52.2
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 4.8e-37 158.7 213 55.4
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 6.3e-37 158.3 199 51.3
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 1.1e-36 157.5 199 50.3
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 1.4e-36 157.1 212 45.3
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 1.8e-36 156.8 230 44.8
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 2.4e-36 156.4 199 50.8
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 2.4e-36 156.4 212 47.2
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 4.1e-36 155.6 206 46.6
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 9.1e-36 154.5 217 48.4
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.6e-35 153.7 206 46.1
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.6e-35 152.9 206 46.1
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 2.6e-35 152.9 197 46.7
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 3.5e-35 152.5 206 44.7
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 3.5e-35 152.5 196 46.4
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 4.5e-35 152.1 107 77.6
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.3e-34 150.6 211 46.0
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 1.7e-34 150.2 210 47.1
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 2.2e-34 149.8 201 43.8
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 2.2e-34 149.8 187 49.7
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 2.2e-34 149.8 201 47.8
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.9e-34 149.4 200 47.0
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.9e-34 149.4 200 47.0
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 5.0e-34 148.7 212 44.8
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 5.0e-34 148.7 93 93.5
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 6.5e-34 148.3 190 47.9
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 1.1e-33 147.5 231 46.8
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 1.5e-33 147.1 195 43.6
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 1.9e-33 146.7 190 47.4
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 2.5e-33 146.4 206 44.2
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 4.2e-33 145.6 195 43.1
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 5.5e-33 145.2 229 42.4
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 5.5e-33 145.2 202 46.5
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 7.2e-33 144.8 200 45.5
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 9.4e-33 144.4 226 41.6
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 1.2e-32 144.1 175 46.9
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.1e-32 143.3 204 49.0
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 2.7e-32 142.9 212 44.3
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 6.1e-32 141.7 208 45.7
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 6.1e-32 141.7 210 42.4
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.0e-31 141.0 208 43.8
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 2.3e-31 139.8 218 46.3
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 2.3e-31 139.8 218 46.3
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 4.0e-31 139.0 178 44.4
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 5.2e-31 138.7 217 42.4
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 2.0e-30 136.7 202 41.6
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 3.3e-30 136.0 204 43.6
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 7.5e-30 134.8 95 84.2
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 1.3e-29 134.0 214 42.5
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 2.2e-29 133.3 200 46.0
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.7e-29 132.5 211 42.2
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 4.8e-29 132.1 210 44.3
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 6.3e-29 131.7 210 43.8
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 8.2e-29 131.3 210 43.8
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 8.2e-29 131.3 210 43.8
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 8.2e-29 131.3 210 43.8
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 8.2e-29 131.3 205 42.0
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 1.1e-28 131.0 168 46.4
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.4e-28 130.6 209 43.1
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 2.4e-28 129.8 193 43.0
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 2.4e-28 129.8 210 43.3
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 3.1e-28 129.4 206 40.3
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 3.1e-28 129.4 203 41.4
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 3.1e-28 129.4 203 41.4
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 3.1e-28 129.4 203 41.4
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.6e-27 127.1 211 42.7
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 2.0e-27 126.7 203 40.9
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 2.0e-27 126.7 203 40.9
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 2.0e-27 126.7 188 39.9
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 2.0e-27 126.7 239 39.7
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 2.7e-27 126.3 247 44.5
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 3.5e-27 125.9 213 40.4
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 3.5e-27 125.9 204 39.7
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 5.9e-27 125.2 205 40.0
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 7.7e-27 124.8 191 39.8
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 1.3e-26 124.0 187 44.4
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.7e-26 123.6 181 45.3
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 1.7e-26 123.6 206 38.8
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 1.7e-26 123.6 206 38.8
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 1.7e-26 123.6 206 38.8
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 2.2e-26 123.2 200 43.0
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 3.8e-26 122.5 200 39.0
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.8e-26 122.5 195 42.6
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 3.8e-26 122.5 210 46.2
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 6.5e-26 121.7 198 41.4
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 8.5e-26 121.3 206 38.3
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 8.5e-26 121.3 206 38.3
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 8.5e-26 121.3 212 44.3
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 1.1e-25 120.9 226 39.8
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.1e-25 120.9 193 42.0
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 1.9e-25 120.2 210 41.4
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 5.5e-25 118.6 201 38.8
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 5.5e-25 118.6 222 41.4
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 9.4e-25 117.9 188 39.9
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 9.4e-25 117.9 189 39.7
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 4.7e-24 115.5 151 49.0
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 8.0e-24 114.8 180 42.2
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 3.0e-23 112.8 210 47.1
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 6.8e-23 111.7 193 40.4
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 6.8e-23 111.7 260 33.1
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 2.0e-22 110.2 196 40.3
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 2.0e-22 110.2 191 39.3
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 2.0e-22 110.2 252 31.7
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 1.4e-20 104.0 173 41.6
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 1.8e-20 103.6 115 51.3
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 4.1e-20 102.4 168 40.5
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 7.0e-20 101.7 207 39.1
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 9.1e-20 101.3 191 40.3
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.0e-19 100.1 166 42.2
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.5e-19 99.0 166 41.6
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 4.5e-19 99.0 176 37.5
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 1.3e-18 97.4 191 37.2
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 1.7e-18 97.1 203 36.5
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 2.9e-18 96.3 185 41.1
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 3.8e-18 95.9 212 36.8
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.8e-16 89.7 211 34.1
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 4.7e-16 89.0 146 45.2
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 6.1e-16 88.6 197 32.0
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 1.4e-15 87.4 169 33.1
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 6.8e-15 85.1 208 30.8
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 8.8e-15 84.7 134 44.8
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 8.8e-15 84.7 196 32.7
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 2.0e-14 83.6 201 31.3
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 1.3e-13 80.9 172 32.6
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 1.3e-13 80.9 172 32.6
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.7e-13 80.5 202 31.7
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 1.7e-13 80.5 169 32.5
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 1.7e-13 80.5 169 32.5
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 2.2e-13 80.1 170 32.9
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 2.2e-13 80.1 169 32.0
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.1e-12 77.8 115 46.1
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 1.8e-12 77.0 115 33.9
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 4.1e-12 75.9 166 34.3
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 9.2e-12 74.7 99 44.4
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 1.2e-11 74.3 165 37.6
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.0e-11 73.6 170 32.9
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 7.3e-09 65.1 162 30.2
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 7.3e-09 65.1 152 30.9
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 9.5e-09 64.7 236 30.9
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 6.1e-08 62.0 124 33.1
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 1.4e-07 60.8 193 27.5
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 8.9e-07 58.2 69 58.0


User provided reference genes

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