Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 1.4e-56 222.6 108 100.0
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 2.4e-51 205.3 108 91.7
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 7.1e-40 167.2 110 78.2
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 3.9e-38 161.4 107 69.2
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 8.7e-38 160.2 108 74.1
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 1.9e-37 159.1 109 71.6
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 1.9e-37 159.1 109 71.6
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 1.9e-37 159.1 108 73.1
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 1.3e-36 156.4 109 73.4
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 4.1e-35 151.4 112 69.6
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 2.6e-34 148.7 110 67.3
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 4.5e-34 147.9 109 68.8
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 5.0e-33 144.4 110 64.5
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 8.5e-33 143.7 109 65.1
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 1.9e-32 142.5 113 69.0
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 3.2e-32 141.7 96 72.9
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 4.2e-32 141.4 109 66.1
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 4.2e-32 141.4 108 58.3
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 1.0e-30 136.7 115 64.3
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 3.9e-30 134.8 108 57.4
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 6.7e-30 134.0 111 59.5
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 6.7e-30 134.0 108 65.7
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 1.5e-29 132.9 110 58.2
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 7.4e-29 130.6 112 56.2
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 1.3e-28 129.8 112 57.1
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 2.2e-28 129.0 111 59.5
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 3.7e-28 128.3 108 58.3
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 1.1e-27 126.7 108 56.5
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 1.4e-27 126.3 113 56.6
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 1.4e-27 126.3 96 60.4
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 3.1e-27 125.2 106 56.6
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 6.9e-27 124.0 111 59.5
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 6.9e-27 124.0 111 59.5
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 6.9e-27 124.0 111 59.5
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 6.9e-27 124.0 110 54.5
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 6.9e-27 124.0 109 56.9
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.5e-26 122.9 110 56.4
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 2.0e-26 122.5 108 52.8
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 2.6e-26 122.1 93 65.6
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 7.7e-26 120.6 122 51.6
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.0e-25 120.2 110 56.4
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 1.0e-25 120.2 109 55.0
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 1.0e-25 120.2 109 56.0
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.3e-25 119.8 111 58.6
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.3e-25 119.8 111 58.6
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 1.3e-25 119.8 108 54.6
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 2.2e-25 119.0 112 55.4
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 2.2e-25 119.0 112 55.4
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 2.9e-25 118.6 111 52.3
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 5.0e-25 117.9 109 53.2
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 1.4e-24 116.3 109 56.0
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 1.9e-24 115.9 109 54.1
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 4.2e-24 114.8 100 58.0
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 4.2e-24 114.8 110 54.5
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 5.5e-24 114.4 92 58.7
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 7.2e-24 114.0 91 58.2
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 9.4e-24 113.6 110 51.8
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 1.2e-23 113.2 108 51.9
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 1.2e-23 113.2 110 50.9
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 1.6e-23 112.8 111 49.5
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 2.1e-23 112.5 114 57.0
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 2.1e-23 112.5 114 57.0
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 2.1e-23 112.5 114 54.4
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 2.7e-23 112.1 108 50.9
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 4.7e-23 111.3 109 51.4
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 4.7e-23 111.3 105 53.3
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 1.0e-22 110.2 109 56.9
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 1.1e-21 106.7 108 52.8
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.5e-21 106.3 111 48.6
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 4.4e-21 104.8 106 49.1
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 5.7e-21 104.4 78 64.1
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 7.4e-21 104.0 110 51.8
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 7.4e-21 104.0 119 50.4
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 9.7e-21 103.6 110 50.9
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.7e-20 102.8 110 50.9
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 1.7e-20 102.8 114 51.8
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 2.2e-20 102.4 109 49.5
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 2.8e-20 102.1 109 51.4
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 3.7e-20 101.7 108 46.3
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 3.7e-20 101.7 110 46.4
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 4.8e-20 101.3 94 55.3
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 6.3e-20 100.9 97 56.7
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 6.3e-20 100.9 103 47.6
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 8.2e-20 100.5 114 50.9
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 3.1e-19 98.6 109 51.4
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 3.1e-19 98.6 97 50.5
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 4.1e-19 98.2 112 50.0
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.2e-18 96.7 106 46.2
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 1.2e-18 96.7 100 52.0
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 2.0e-18 95.9 123 46.3
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 2.6e-18 95.5 112 44.6
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 2.6e-18 95.5 111 49.5
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 2.2e-17 92.4 95 53.7
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 2.9e-17 92.0 98 52.0
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 1.4e-16 89.7 109 45.0
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 4.2e-16 88.2 108 42.6
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 5.5e-16 87.8 108 41.7
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 5.5e-16 87.8 116 44.8
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 7.2e-16 87.4 116 44.8
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 1.2e-15 86.7 116 44.8
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.2e-15 86.7 108 40.7
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 2.1e-15 85.9 80 47.5
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 2.7e-15 85.5 110 44.5
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 2.7e-15 85.5 108 43.5
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 2.7e-15 85.5 108 43.5
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 2.7e-15 85.5 109 45.9
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 2.7e-15 85.5 109 45.0
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 3.6e-15 85.1 112 42.0
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 6.1e-15 84.3 125 40.8
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 8.0e-15 84.0 109 43.1
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 8.0e-15 84.0 108 42.6
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 8.0e-15 84.0 101 49.5
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 1.4e-14 83.2 109 42.2
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 1.8e-14 82.8 108 41.7
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 2.3e-14 82.4 108 41.7
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 2.3e-14 82.4 105 46.7
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 2.3e-14 82.4 114 38.6
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 3.0e-14 82.0 115 40.9
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 3.9e-14 81.6 96 42.7
MBI16_g31702_MAGBIO Magnolia biondii HOM05D005150 ORTHO05D006070 5.2e-14 81.3 108 42.6
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 5.2e-14 81.3 89 47.2
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 2.6e-13 79.0 110 40.0
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 4.4e-13 78.2 108 39.8
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 5.7e-13 77.8 110 40.0
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 5.7e-13 77.8 110 40.0
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 5.7e-13 77.8 112 42.9
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.7e-12 76.3 110 39.1
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 1.7e-12 76.3 112 41.1
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 2.8e-12 75.5 110 39.1
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 3.7e-12 75.1 110 38.2
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 3.7e-12 75.1 110 38.2
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 4.8e-12 74.7 101 35.6
Peaxi162Scf32072g00001 Petunia axillaris HOM05D005150 ORTHO05D006070 4.8e-12 74.7 61 57.4
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.1e-11 73.6 112 40.2
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 5.3e-11 71.2 107 37.4
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 7.0e-11 70.9 100 39.0
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 9.1e-11 70.5 103 39.8
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 1.2e-10 70.1 110 38.2
ATR0712G027 Amborella trichopoda HOM05D005150 ORTHO05D006070 1.2e-10 70.1 119 40.3
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 1.2e-10 70.1 53 50.9
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 2.6e-10 68.9 93 41.9
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 1.3e-09 66.6 112 40.2
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 2.2e-09 65.9 96 34.4
Sed0002977 Sechium edule HOM05D005150 ORTHO05D006070 2.2e-09 65.9 110 40.9
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 3.8e-09 65.1 111 35.1
VMungo1383G0333 Vigna mungo HOM05D003667 ORTHO05D036049 6.5e-09 64.3 48 64.6
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 2.1e-07 59.3 94 39.4
MBI19_g06152_MAGBIO Magnolia biondii HOM05D005150 ORTHO05D006070 1.4e-06 56.6 108 37.0


User provided reference genes

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