Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G073300 Glycine max HOM05D022580 ORTHO05D000630 3.0e-279 964.5 491 100.0
Glyma.20G047500 Glycine max HOM05D022580 ORTHO05D000630 3.8e-157 558.9 517 66.0
VMungo0540G2495 Vigna mungo HOM05D022580 ORTHO05D000630 1.1e-116 424.5 498 55.0
Phvul.006G020000 Phaseolus vulgaris HOM05D022580 ORTHO05D000630 3.9e-109 399.4 502 51.4
Lj6g0021794 Lotus japonicus HOM05D000085 ORTHO05D015977 1.2e-46 191.8 478 37.7
Lalb_Chr15g0080221 Lupinus albus HOM05D008543 ORTHO05D000630 1.2e-36 158.7 476 32.1
QL01p020579 Quercus lobata HOM05D008543 ORTHO05D000630 9.8e-28 129.0 470 28.9
TPR.G11948 Trifolium pratense HOM05D008543 ORTHO05D000630 3.0e-24 117.5 280 37.9
Psat1g077000 Pisum sativum HOM05D008543 ORTHO05D000630 5.0e-24 116.7 283 36.4
Rhsim06G0235100 Rhododendron simsii HOM05D000174 ORTHO05D000630 1.4e-21 108.6 479 28.8
Medtr6g081160 Medicago truncatula HOM05D022580 ORTHO05D000630 3.1e-21 107.5 267 35.6
Prupe.6G035400 Prunus persica HOM05D000174 ORTHO05D000630 3.1e-21 107.5 476 27.7
arahy.Tifrunner.gnm1.ann1.YK7I6N Arachis hypogaea HOM05D008543 ORTHO05D000630 4.0e-21 107.1 447 28.6
CiPaw.13G145600 Carya illinoinensis HOM05D019813 ORTHO05D000630 1.2e-20 105.5 483 28.2
Ca_23871_v3 Cicer arietinum L. HOM05D008543 ORTHO05D000630 9.8e-20 102.4 345 33.3
arahy.Tifrunner.gnm1.ann1.1FA9DV Arachis hypogaea HOM05D008543 ORTHO05D000630 1.4e-18 98.6 303 29.0
CSS0041839 Camellia sinensis var. sinensis HOM05D008543 ORTHO05D000630 1.4e-18 98.6 423 28.1
Oeu006263.1 Olea europaea HOM05D008543 ORTHO05D000630 7.0e-18 96.3 451 28.4
CSS0016853 Camellia sinensis var. sinensis HOM05D000174 ORTHO05D000630 9.2e-18 95.9 519 27.6
CiPaw.12G142600 Carya illinoinensis HOM05D000174 ORTHO05D000630 2.0e-17 94.7 431 26.9
FAN25G3117 Fragaria x ananassa HOM05D000174 ORTHO05D000630 3.5e-17 94.0 391 28.1
Oeu052885.1 Olea europaea HOM05D008543 ORTHO05D000630 7.8e-17 92.8 464 26.9
Actinidia30352 Actinidia chinensis HOM05D008543 ORTHO05D000630 1.0e-16 92.4 440 27.3
Cc05_g15710 Coffea canephora HOM05D000174 ORTHO05D000630 1.0e-16 92.4 172 39.5
PGR119G0147 Punica granatum HOM05D000174 ORTHO05D000630 1.0e-16 92.4 428 24.8
FvH4_3g41600 Fragaria vesca HOM05D000174 ORTHO05D000630 1.3e-16 92.0 392 27.3
Peaxi162Scf00234g00042 Petunia axillaris HOM05D000174 ORTHO05D000630 1.3e-16 92.0 514 25.3
Lsat_1_v5_gn_9_88600 Lactuca sativa HOM05D000174 ORTHO05D000630 6.6e-16 89.7 455 25.3
MD11G1046000 Malus domestica HOM05D000174 ORTHO05D000630 6.6e-16 89.7 461 27.5
RcHm_v2.0_Chr5g0074621 Rosa chinensis HOM05D000174 ORTHO05D000630 6.6e-16 89.7 475 26.5
FAN21G0599 Fragaria x ananassa HOM05D000174 ORTHO05D000630 1.9e-15 88.2 489 27.0
COL.COLO4_33268 Corchorus olitorius HOM05D008543 ORTHO05D000630 4.3e-15 87.0 173 35.3
Dinv40916 Davidia involucrata HOM05D008543 ORTHO05D000630 4.3e-15 87.0 117 45.3
Lalb_Chr17g0347691 Lupinus albus HOM05D008543 ORTHO05D000630 7.3e-15 86.3 203 32.5
Sc16g0010820 Simmondsia chinensis HOM05D008543 ORTHO05D000630 7.3e-15 86.3 407 26.8
TAR636G0894 Trochodendron aralioides HOM05D008543 ORTHO05D000630 1.2e-14 85.5 442 26.7
Cc01_g06930 Coffea canephora HOM05D000174 ORTHO05D000630 1.6e-14 85.1 501 25.1
FAN11G0349 Fragaria x ananassa HOM05D000174 ORTHO05D000630 2.1e-14 84.7 484 24.8
AL4G20180 Arabidopsis lyrata HOM05D012084 ORTHO05D000630 3.6e-14 84.0 118 42.4
Peaxi162Scf00232g00062 Petunia axillaris HOM05D008543 ORTHO05D000630 3.6e-14 84.0 132 40.2
QL08p000516 Quercus lobata HOM05D000174 ORTHO05D000630 3.6e-14 84.0 515 25.0
BolC4t23958H Brassica oleracea HOM05D012084 ORTHO05D000630 1.4e-13 82.0 128 40.6
FAN16G0761 Fragaria x ananassa HOM05D000174 ORTHO05D000630 1.4e-13 82.0 509 25.0
Manes.01G176050 Manihot esculenta HOM05D049795 ORTHO05D000630 1.4e-13 82.0 236 30.5
Gohir.A07G119050 Gossypium hirsutum HOM05D008543 ORTHO05D000630 1.8e-13 81.6 138 37.0
Duzib170G0186 Durio zibethinus HOM05D008543 ORTHO05D000630 2.3e-13 81.3 140 38.6
Thhalv10015446m.g Eutrema salsugineum HOM05D000174 ORTHO05D000630 3.1e-13 80.9 109 45.9
MD03G1043000 Malus domestica HOM05D000174 ORTHO05D000630 3.1e-13 80.9 435 25.5
Cpa.g.sc12.67 Carica papaya HOM05D000174 ORTHO05D000630 4.0e-13 80.5 483 25.5
Sabra16G0133300 Salix brachista HOM05D008543 ORTHO05D000630 5.2e-13 80.1 455 26.6
THA.LOC104827413 Tarenaya hassleriana HOM05D012084 ORTHO05D000630 5.2e-13 80.1 108 39.8
A07p17920 Brassica napus HOM05D012084 ORTHO05D000630 6.8e-13 79.7 99 43.4
BraA07t29510Z Brassica rapa HOM05D012084 ORTHO05D000630 6.8e-13 79.7 99 43.4
Potri.001G224600 Populus trichocarpa HOM05D008543 ORTHO05D000630 6.8e-13 79.7 525 27.6
Thecc.09G250700 Theobroma cacao HOM05D008543 ORTHO05D000630 8.9e-13 79.3 124 42.7
QL07p014639 Quercus lobata HOM05D008543 ORTHO05D000630 1.2e-12 79.0 465 26.7
C09p47440 Brassica napus HOM05D000174 ORTHO05D000630 1.5e-12 78.6 95 45.3
Duzib150G0090 Durio zibethinus HOM05D008543 ORTHO05D000630 1.5e-12 78.6 156 36.5
Carub.0003s1290 Capsella rubella HOM05D012084 ORTHO05D000630 2.0e-12 78.2 108 43.5
CiPaw.13G145500 Carya illinoinensis HOM05D008543 ORTHO05D000630 2.0e-12 78.2 511 26.0
Gohir.D07G123350 Gossypium hirsutum HOM05D008543 ORTHO05D000630 2.6e-12 77.8 138 35.5
Gorai.001G133100 Gossypium raimondii HOM05D008543 ORTHO05D000630 2.6e-12 77.8 138 35.5
Nitab4.5_0000152g0060 Nicotiana tabacum HOM05D008543 ORTHO05D000630 2.6e-12 77.8 108 38.9
Sp6g18050 Schrenkiella parvula HOM05D000174 ORTHO05D000630 2.6e-12 77.8 95 43.2
AL8G31830 Arabidopsis lyrata HOM05D000174 ORTHO05D000630 3.4e-12 77.4 110 44.5
BcaB01g03035 Brassica carinata HOM05D012084 ORTHO05D000630 3.4e-12 77.4 136 36.0
A10p13430 Brassica napus HOM05D000174 ORTHO05D000630 3.4e-12 77.4 95 44.2
BraA10t43446Z Brassica rapa HOM05D000174 ORTHO05D000630 3.4e-12 77.4 95 44.2
MD03G1110900 Malus domestica HOM05D025829 ORTHO05D000630 3.4e-12 77.4 143 37.1
BcaC02g10848 Brassica carinata HOM05D012084 ORTHO05D000630 4.4e-12 77.0 129 38.8
C04p24550 Brassica napus HOM05D012084 ORTHO05D000630 4.4e-12 77.0 129 38.8
Carub.0008s1652 Capsella rubella HOM05D000174 ORTHO05D000630 4.4e-12 77.0 110 45.5
CARHR119210 Cardamine hirsuta HOM05D012084 ORTHO05D000630 4.4e-12 77.0 122 40.2
Nn1g07631 Nelumbo nucifera HOM05D000174 ORTHO05D000630 4.4e-12 77.0 409 25.4
Sp4g08400 Schrenkiella parvula HOM05D012084 ORTHO05D000630 5.8e-12 76.6 103 42.7
Nitab4.5_0000205g0040 Nicotiana tabacum HOM05D059491 ORTHO05D000630 7.5e-12 76.3 440 23.9
Atru.chr2.3896 Acer truncatum HOM05D000174 ORTHO05D000630 1.3e-11 75.5 172 33.7
Gohir.A08G009700 Gossypium hirsutum HOM05D008543 ORTHO05D000630 1.3e-11 75.5 120 39.2
CiPaw.11G210700 Carya illinoinensis HOM05D000174 ORTHO05D000630 1.7e-11 75.1 524 26.3
AT2G26940 Arabidopsis thaliana HOM05D012084 ORTHO05D000630 2.2e-11 74.7 111 40.5
EL10Ac4g10054 Beta vulgaris HOM05D008543 ORTHO05D000630 2.2e-11 74.7 115 41.7
CARHR119110 Cardamine hirsuta HOM05D012084 ORTHO05D000630 2.2e-11 74.7 106 46.2
Ciclev10007805m.g Citrus clementina HOM05D000174 ORTHO05D000630 2.2e-11 74.7 137 35.8
PGSC0003DMG400034376 Solanum tuberosum HOM05D000174 ORTHO05D000630 2.2e-11 74.7 487 24.4
BcaC04g20137 Brassica carinata HOM05D000174 ORTHO05D000630 2.9e-11 74.3 111 42.3
BolC9t57599H Brassica oleracea HOM05D000174 ORTHO05D000630 2.9e-11 74.3 111 42.3
Gohir.D08G019750 Gossypium hirsutum HOM05D008543 ORTHO05D000630 2.9e-11 74.3 120 38.3
Gorai.004G014300 Gossypium raimondii HOM05D008543 ORTHO05D000630 2.9e-11 74.3 120 38.3
AT5G56200 Arabidopsis thaliana HOM05D000174 ORTHO05D000630 3.7e-11 73.9 95 43.2
Duzib168G2176 Durio zibethinus HOM05D008543 ORTHO05D000630 3.7e-11 73.9 127 40.2
SGA_v2.0_scaffold7G03548 Striga asiatica HOM05D008543 ORTHO05D000630 3.7e-11 73.9 171 33.9
Eucgr.F03645 Eucalyptus grandis HOM05D008543 ORTHO05D000630 4.9e-11 73.6 487 24.6
CSS0027724 Camellia sinensis var. sinensis HOM05D008543 ORTHO05D000630 8.3e-11 72.8 190 32.6
Thhalv10002171m.g Eutrema salsugineum HOM05D012084 ORTHO05D000630 8.3e-11 72.8 148 35.8
Solyc11g072210.1 Solanum lycopersicum HOM05D000174 ORTHO05D000630 8.3e-11 72.8 486 23.5
THA.LOC104817725 Tarenaya hassleriana HOM05D000174 ORTHO05D000630 1.4e-10 72.0 128 39.8
GSVIVG01014844001 Vitis vinifera HOM05D000174 ORTHO05D000630 1.4e-10 72.0 454 25.1
Cfa010152 Carpinus fangiana HOM05D019813 ORTHO05D000630 1.9e-10 71.6 456 24.8
BcaB08g35982 Brassica carinata HOM05D000174 ORTHO05D000630 2.4e-10 71.2 166 32.5
CAN.G1085.7 Capsicum annuum HOM05D000174 ORTHO05D000630 4.1e-10 70.5 458 25.5
CAN.G623.74 Capsicum annuum HOM05D008543 ORTHO05D000630 4.1e-10 70.5 133 34.6
Nitab4.5_0003570g0030 Nicotiana tabacum HOM05D008543 ORTHO05D000630 4.1e-10 70.5 112 37.5
BcaB02g10056 Brassica carinata HOM05D012084 ORTHO05D000630 5.4e-10 70.1 101 40.6
Nn1g07630 Nelumbo nucifera HOM05D000174 ORTHO05D000630 5.4e-10 70.1 484 24.6
Oeu032035.1 Olea europaea HOM05D011325 ORTHO05D000630 5.4e-10 70.1 112 35.7
Lj8C183G11 Lonicera japonica HOM05D000174 ORTHO05D000630 1.2e-09 68.9 383 27.7
Sopen11g029860 Solanum pennellii HOM05D000174 ORTHO05D000630 1.2e-09 68.9 498 24.7
HanXRQChr13g0409261 Helianthus annuus HOM05D000174 ORTHO05D000630 1.6e-09 68.6 448 25.2
PGSC0003DMG400022147 Solanum tuberosum HOM05D008543 ORTHO05D000630 1.6e-09 68.6 491 24.8
SGA_v2.0_scaffold79G25559 Striga asiatica HOM05D011325 ORTHO05D000630 2.1e-09 68.2 101 41.6
Oeu025932.1 Olea europaea HOM05D011325 ORTHO05D000630 2.7e-09 67.8 470 23.4
TWI75G0649 Tripterygium wilfordii HOM05D008543 ORTHO05D000630 3.5e-09 67.4 117 34.2
CDE03G0095 Ceratophyllum demersum HOM05D056667 ORTHO05D000630 6.0e-09 66.6 467 24.2
Ca_12245_v3 Cicer arietinum L. HOM05D027424 ORTHO05D017834 7.8e-09 66.2 100 39.0
Ca_12258_v3 Cicer arietinum L. HOM05D027424 ORTHO05D022364 7.8e-09 66.2 95 37.9
Haze_09916 Corylus avellana HOM05D000174 ORTHO05D000630 7.8e-09 66.2 490 23.7
Oeu052027.2 Olea europaea HOM05D000784 ORTHO05D000116 1.0e-08 65.9 109 37.6
Nitab4.5_0009408g0010 Nicotiana tabacum HOM05D008543 ORTHO05D000630 1.3e-08 65.5 464 22.8
Sopen10g026890 Solanum pennellii HOM05D011325 ORTHO05D000630 1.7e-08 65.1 171 32.2
Prupe.6G093400 Prunus persica HOM05D025829 ORTHO05D000630 2.3e-08 64.7 91 39.6
ECA240G0792 Erigeron canadensis HOM05D000174 ORTHO05D000630 3.0e-08 64.3 412 23.3
BcaB05g22249 Brassica carinata HOM05D000174 ORTHO05D000630 5.1e-08 63.5 91 38.5
SGA_v2.0_scaffold11G05961 Striga asiatica HOM05D010587 ORTHO05D000630 5.1e-08 63.5 129 30.2
ATR0751G124 Amborella trichopoda HOM05D010587 ORTHO05D001526 6.6e-08 63.2 103 32.0
Oeu025931.1 Olea europaea HOM05D011325 ORTHO05D000630 6.6e-08 63.2 90 40.0
VMungo0251G2315 Vigna mungo HOM05D008543 ORTHO05D000630 6.6e-08 63.2 113 38.9
PSO541G5961 Papaver somniferum HOM05D000174 ORTHO05D000630 8.6e-08 62.8 414 23.2
Sc06g0004820 Simmondsia chinensis HOM05D008543 ORTHO05D000630 8.6e-08 62.8 420 25.2
Sopen10g025660 Solanum pennellii HOM05D011325 ORTHO05D000630 8.6e-08 62.8 137 35.8
CANSAT54G2384 Cannabis sativa HOM05D008543 ORTHO05D000630 1.1e-07 62.4 112 30.4
Migut.M01582 Erythranthe guttata HOM05D008543 ORTHO05D000630 1.5e-07 62.0 119 31.1
unitig_26.g10291 Utricularia gibba HOM05D001658 ORTHO05D001406 1.5e-07 62.0 123 37.4
MD11G1124800 Malus domestica HOM05D025829 ORTHO05D000630 2.5e-07 61.2 499 25.9
Actinidia10593 Actinidia chinensis HOM05D000174 ORTHO05D000630 4.3e-07 60.5 512 25.4
HanXRQChr03g0079361 Helianthus annuus HOM05D000174 ORTHO05D000630 5.6e-07 60.1 452 24.1
Oeu032037.1 Olea europaea HOM05D011325 ORTHO05D000630 5.6e-07 60.1 167 32.3
Migut.N02396 Erythranthe guttata HOM05D000174 ORTHO05D000630 7.3e-07 59.7 515 24.9
Oeu032036.1 Olea europaea HOM05D011325 ORTHO05D000630 7.3e-07 59.7 425 25.4
CARHR269600 Cardamine hirsuta HOM05D000174 ORTHO05D000630 9.5e-07 59.3 417 25.2
Prupe.6G093500 Prunus persica HOM05D025829 ORTHO05D000630 1.2e-06 58.9 479 23.2
ATR1101G089 Amborella trichopoda HOM05D010587 ORTHO05D000630 1.6e-06 58.5 101 28.7
CiPaw.07G176200 Carya illinoinensis HOM05D000174 ORTHO05D000630 1.6e-06 58.5 97 34.0
FvH4_6g47240 Fragaria vesca HOM05D001658 ORTHO05D001406 2.1e-06 58.2 99 34.3
Pp3c21_440 Physcomitrium patens HOM05D000174 ORTHO05D001526 2.1e-06 58.2 107 30.8
THA.LOC104811702 Tarenaya hassleriana HOM05D000174 ORTHO05D000630 2.1e-06 58.2 447 21.7
DCAR_013757 Daucus carota HOM05D000174 ORTHO05D000630 2.8e-06 57.8 427 22.0
Cfa016961 Carpinus fangiana HOM05D000174 ORTHO05D000630 3.6e-06 57.4 520 23.7
FAN14G2327 Fragaria x ananassa HOM05D001658 ORTHO05D001406 4.7e-06 57.0 99 33.3
FAN09G1558 Fragaria x ananassa HOM05D001658 ORTHO05D001406 6.2e-06 56.6 90 35.6
FAN09G4404 Fragaria x ananassa HOM05D001658 ORTHO05D001406 6.2e-06 56.6 90 35.6
PGSC0003DMG400034322 Solanum tuberosum HOM05D000174 ORTHO05D000630 6.2e-06 56.6 100 37.0
SalBow5G3920 Salvia bowleyana HOM05D000174 ORTHO05D001526 8.1e-06 56.2 107 36.4
SalBow5G5261 Salvia bowleyana HOM05D000174 ORTHO05D001526 8.1e-06 56.2 107 36.4


User provided reference genes

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