Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 3.8e-73 278.5 186 100.0
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 2.3e-62 242.7 151 90.7
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 1.1e-56 223.8 149 85.2
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 1.5e-45 186.8 118 89.0
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 1.8e-43 179.9 150 68.0
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 5.7e-37 158.3 152 60.5
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 2.2e-36 156.4 151 59.6
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 2.8e-36 156.0 155 61.9
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 1.8e-35 153.3 166 59.6
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 5.3e-35 151.8 99 81.8
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 7.0e-35 151.4 146 58.9
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 9.1e-35 151.0 146 58.9
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 7.7e-34 147.9 95 83.2
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 7.7e-34 147.9 95 83.2
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 1.7e-33 146.7 127 66.9
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 2.2e-33 146.4 147 59.2
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 3.8e-33 145.6 152 56.6
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 3.8e-33 145.6 111 68.5
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 5.0e-33 145.2 117 67.5
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 6.5e-33 144.8 147 58.5
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 8.5e-33 144.4 99 77.8
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 1.1e-32 144.1 128 61.7
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 1.5e-32 143.7 127 64.6
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 2.5e-32 142.9 128 62.5
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.5e-32 142.9 128 62.5
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 3.2e-32 142.5 94 78.7
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 4.2e-32 142.1 136 60.3
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 7.2e-32 141.4 134 61.9
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 9.4e-32 141.0 134 59.7
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 9.4e-32 141.0 136 60.3
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.6e-31 140.2 130 62.3
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.1e-31 139.8 130 62.3
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.1e-31 139.8 130 62.3
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 2.7e-31 139.4 134 60.4
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 3.6e-31 139.0 92 80.4
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 4.7e-31 138.7 96 78.1
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 6.1e-31 138.3 121 62.8
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 6.1e-31 138.3 123 62.6
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 6.1e-31 138.3 155 56.8
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 8.0e-31 137.9 99 73.7
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 1.0e-30 137.5 92 76.1
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 1.0e-30 137.5 122 63.1
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 1.4e-30 137.1 122 65.6
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 1.4e-30 137.1 107 66.4
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 1.8e-30 136.7 92 76.1
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 1.8e-30 136.7 92 76.1
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 1.8e-30 136.7 92 76.1
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 1.8e-30 136.7 106 68.9
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 1.8e-30 136.7 127 63.8
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 2.3e-30 136.3 92 75.0
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 2.3e-30 136.3 92 75.0
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 2.3e-30 136.3 111 65.8
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 2.3e-30 136.3 92 79.3
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 2.3e-30 136.3 131 62.6
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 2.3e-30 136.3 122 65.6
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 3.0e-30 136.0 90 76.7
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 3.0e-30 136.0 122 62.3
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 3.0e-30 136.0 90 76.7
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 3.0e-30 136.0 90 76.7
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 3.0e-30 136.0 135 59.3
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 4.0e-30 135.6 144 54.2
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 4.0e-30 135.6 92 75.0
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 4.0e-30 135.6 134 58.2
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 5.2e-30 135.2 149 57.0
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 8.8e-30 134.4 147 55.1
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 8.8e-30 134.4 132 59.1
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 8.8e-30 134.4 92 75.0
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 8.8e-30 134.4 145 57.2
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 1.2e-29 134.0 151 55.0
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 1.2e-29 134.0 124 66.1
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 1.5e-29 133.7 113 64.6
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 2.6e-29 132.9 92 75.0
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 3.4e-29 132.5 163 53.4
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 3.4e-29 132.5 155 53.5
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 3.4e-29 132.5 90 75.6
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 5.7e-29 131.7 102 68.6
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 5.7e-29 131.7 130 60.0
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 9.8e-29 131.0 134 56.0
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 1.7e-28 130.2 96 72.9
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 2.8e-28 129.4 109 64.2
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 2.8e-28 129.4 136 56.6
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 2.8e-28 129.4 142 57.0
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 3.7e-28 129.0 86 75.6
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 3.7e-28 129.0 92 72.8
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 4.8e-28 128.6 145 54.5
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 6.3e-28 128.3 141 56.0
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 6.3e-28 128.3 92 72.8
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 6.3e-28 128.3 144 54.2
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 6.3e-28 128.3 154 51.9
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 8.3e-28 127.9 135 58.5
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 8.3e-28 127.9 80 83.8
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 1.1e-27 127.5 92 72.8
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 1.1e-27 127.5 127 60.6
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 1.4e-27 127.1 97 69.1
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 1.8e-27 126.7 120 60.0
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 2.4e-27 126.3 91 72.5
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 3.1e-27 125.9 118 63.6
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 5.4e-27 125.2 141 53.2
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 2.0e-26 123.2 150 53.3
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 2.0e-26 123.2 146 54.1
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 5.0e-25 118.6 86 73.3
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 6.6e-25 118.2 86 72.1
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 1.1e-24 117.5 123 58.5
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 4.2e-24 115.5 185 43.8
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 9.5e-24 114.4 167 46.1
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 1.2e-23 114.0 80 71.2
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 6.1e-23 111.7 86 72.1
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 4.0e-22 109.0 77 71.4
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 4.9e-20 102.1 77 71.4
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 6.3e-20 101.7 100 57.0
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 6.3e-20 101.7 87 60.9
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 3.1e-19 99.4 72 70.8
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 1.6e-18 97.1 84 58.3
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 4.5e-18 95.5 86 55.8
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 5.0e-17 92.0 86 55.8
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 5.6e-16 88.6 73 69.9
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 1.2e-15 87.4 127 44.1
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 2.9e-12 76.3 62 67.7
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 8.3e-12 74.7 134 42.5
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.4e-11 73.9 59 71.2
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 2.4e-11 73.2 56 62.5
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 2.7e-10 69.7 117 33.3
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 7.8e-10 68.2 44 77.3
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 2.3e-09 66.6 55 61.8
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 5.6e-08 62.0 86 46.5
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 9.5e-08 61.2 119 32.8
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 1.2e-07 60.8 70 52.9
Cpa.g.sc286.7 Carica papaya HOM05D005889 ORTHO05D007495 2.8e-07 59.7 71 52.1


User provided reference genes

Program Settings