Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G066900 Glycine max HOM05D006434 ORTHO05D008069 5.8e-167 590.9 312 100.0
Phvul.004G023900 Phaseolus vulgaris HOM05D006434 ORTHO05D008069 2.9e-150 535.4 316 86.4
VMungo0464G0451 Vigna mungo HOM05D006434 ORTHO05D008069 4.8e-145 518.1 316 89.2
Lj2g0012157 Lotus japonicus HOM05D006434 ORTHO05D008069 1.4e-141 506.5 318 82.1
Medtr6g009400 Medicago truncatula HOM05D006434 ORTHO05D008069 3.7e-129 465.3 319 75.9
TPR.G32608 Trifolium pratense HOM05D006434 ORTHO05D008069 4.1e-128 461.8 320 75.3
arahy.Tifrunner.gnm1.ann1.ICRE53 Arachis hypogaea HOM05D006434 ORTHO05D008069 3.4e-127 458.8 317 76.7
Lalb_Chr21g0319131 Lupinus albus HOM05D006434 ORTHO05D008069 2.9e-126 455.7 315 76.2
arahy.Tifrunner.gnm1.ann1.X2C98S Arachis hypogaea HOM05D006434 ORTHO05D008069 8.5e-126 454.1 313 77.0
Cfa007492 Carpinus fangiana HOM05D006434 ORTHO05D008069 3.6e-116 422.2 302 70.2
GSVIVG01032566001 Vitis vinifera HOM05D006434 ORTHO05D008069 2.0e-114 416.4 314 69.7
Dinv35002 Davidia involucrata HOM05D006434 ORTHO05D008069 1.4e-112 410.2 311 68.5
CANSAT64G2331 Cannabis sativa HOM05D006434 ORTHO05D008069 1.5e-111 406.8 318 67.9
PSO478G2838 Papaver somniferum HOM05D006434 ORTHO05D008069 1.5e-111 406.8 286 71.7
Psat1g076480 Pisum sativum HOM05D006434 ORTHO05D008069 1.5e-111 406.8 267 77.9
TAR629G3263 Trochodendron aralioides HOM05D006434 ORTHO05D008069 1.5e-111 406.8 313 68.4
Potri.001G349800 Populus trichocarpa HOM05D006434 ORTHO05D008069 1.0e-110 404.1 320 66.9
MELO3C021484.2 Cucumis melo HOM05D006434 ORTHO05D008069 2.9e-110 402.5 290 71.0
Hma1.2p1_0136F.1_g062090 Hydrangea macrophylla HOM05D006434 ORTHO05D008069 8.5e-110 401.0 266 75.6
CsaV3_5G037720 Cucumis sativus L. HOM05D006434 ORTHO05D008069 1.1e-109 400.6 317 66.2
Sed0011674 Sechium edule HOM05D006434 ORTHO05D008069 1.4e-109 400.2 316 66.1
Duzib264G0249 Durio zibethinus HOM05D006434 ORTHO05D008069 5.5e-109 398.3 290 69.3
QL02p079411 Quercus lobata HOM05D006434 ORTHO05D008069 9.4e-109 397.5 316 67.1
Eucgr.I01896 Eucalyptus grandis HOM05D006434 ORTHO05D008069 1.2e-108 397.1 315 67.9
PSO161G0076 Papaver somniferum HOM05D006434 ORTHO05D008069 3.6e-108 395.6 267 73.0
Nn1g08819 Nelumbo nucifera HOM05D006434 ORTHO05D008069 4.7e-108 395.2 309 67.0
Sabra16G0229200 Salix brachista HOM05D006434 ORTHO05D008069 6.1e-108 394.8 320 65.3
CSS0040499 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.4e-107 393.7 295 67.8
Glyma.19G017500 Glycine max HOM05D006434 ORTHO05D008069 1.8e-107 393.3 197 97.0
Actinidia06053 Actinidia chinensis HOM05D006434 ORTHO05D008069 2.3e-107 392.9 311 66.2
CSS0004781 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 2.3e-107 392.9 316 65.8
COL.COLO4_36989 Corchorus olitorius HOM05D006434 ORTHO05D008069 8.8e-107 391.0 320 64.4
Thecc.04G069300 Theobroma cacao HOM05D006434 ORTHO05D008069 1.5e-106 390.2 321 65.4
TWI56G0494 Tripterygium wilfordii HOM05D006434 ORTHO05D008069 3.3e-106 389.0 317 64.7
Gorai.001G257900 Gossypium raimondii HOM05D006434 ORTHO05D008069 5.7e-106 388.3 291 70.4
vmacro05779 Vaccinium macrocarpon HOM05D006434 ORTHO05D008069 7.4e-106 387.9 310 65.8
Atru.chr8.2465 Acer truncatum HOM05D006434 ORTHO05D008069 1.3e-105 387.1 308 65.9
CAN.G1128.11 Capsicum annuum HOM05D006434 ORTHO05D008069 1.3e-105 387.1 273 70.7
Gohir.D07G223600 Gossypium hirsutum HOM05D006434 ORTHO05D008069 1.7e-105 386.7 291 70.4
Gohir.A07G216800 Gossypium hirsutum HOM05D006434 ORTHO05D008069 2.2e-105 386.3 291 69.8
Rhsim10G0029400 Rhododendron simsii HOM05D006434 ORTHO05D008069 2.2e-105 386.3 312 67.6
Ciclev10012231m.g Citrus clementina HOM05D006434 ORTHO05D008069 2.8e-105 386.0 308 66.2
Manes.15G178000 Manihot esculenta HOM05D006434 ORTHO05D008069 3.7e-105 385.6 313 64.2
PGSC0003DMG400006900 Solanum tuberosum HOM05D006434 ORTHO05D008069 4.8e-105 385.2 266 72.2
PGR142G2438 Punica granatum HOM05D006434 ORTHO05D008069 6.3e-105 384.8 267 72.3
Aqoxy3G00846 Aquilegia oxysepala HOM05D006434 ORTHO05D008069 1.4e-104 383.6 305 65.6
CiPaw.03G032300 Carya illinoinensis HOM05D006434 ORTHO05D008069 1.8e-104 383.3 281 72.2
Nitab4.5_0001727g0150 Nicotiana tabacum HOM05D006434 ORTHO05D008069 3.1e-104 382.5 298 66.8
RcHm_v2.0_Chr2g0169691 Rosa chinensis HOM05D006434 ORTHO05D008069 3.1e-104 382.5 318 64.2
MD09G1042700 Malus domestica HOM05D006434 ORTHO05D008069 7.0e-104 381.3 313 65.2
Solyc02g067540.3 Solanum lycopersicum HOM05D006434 ORTHO05D008069 2.6e-103 379.4 266 71.8
Sopen02g016670 Solanum pennellii HOM05D006434 ORTHO05D008069 2.6e-103 379.4 266 71.8
Sc10g0004040 Simmondsia chinensis HOM05D006434 ORTHO05D008069 1.3e-102 377.1 259 72.2
FvH4_6g49670 Fragaria vesca HOM05D006434 ORTHO05D008069 1.7e-102 376.7 320 63.4
Oeu022866.3 Olea europaea HOM05D006434 ORTHO05D008069 2.2e-102 376.3 358 60.3
Cc07_g02850 Coffea canephora HOM05D006434 ORTHO05D008069 3.8e-102 375.6 315 64.4
FAN02G4063 Fragaria x ananassa HOM05D006434 ORTHO05D008069 3.8e-102 375.6 283 68.2
FAN14G5872 Fragaria x ananassa HOM05D006434 ORTHO05D008069 2.5e-101 372.9 320 63.1
Peaxi162Scf00059g00128 Petunia axillaris HOM05D006434 ORTHO05D008069 2.5e-101 372.9 277 69.0
Thhalv10004634m.g Eutrema salsugineum HOM05D006434 ORTHO05D008069 7.2e-101 371.3 269 74.0
FAN05G1688 Fragaria x ananassa HOM05D006434 ORTHO05D008069 9.4e-101 370.9 311 63.7
Carub.0005s0699 Capsella rubella HOM05D006434 ORTHO05D008069 8.0e-100 367.9 320 62.2
AL5G18090 Arabidopsis lyrata HOM05D006434 ORTHO05D008069 1.8e-99 366.7 315 62.2
AUR62018326 Chenopodium quinoa HOM05D006434 ORTHO05D008069 2.3e-99 366.3 315 62.9
Sp2g17230 Schrenkiella parvula HOM05D006434 ORTHO05D008069 3.0e-99 365.9 264 74.6
ATR0665G567 Amborella trichopoda HOM05D006434 ORTHO05D008069 5.2e-99 365.2 297 64.0
DCAR_006717 Daucus carota HOM05D006434 ORTHO05D008069 6.7e-99 364.8 215 80.5
CARHR292500 Cardamine hirsuta HOM05D006434 ORTHO05D008069 2.6e-98 362.8 320 64.4
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 1.7e-97 360.1 294 66.0
A06p40510 Brassica napus HOM05D006434 ORTHO05D008069 4.8e-97 358.6 325 65.8
BraA06t26970Z Brassica rapa HOM05D006434 ORTHO05D008069 4.8e-97 358.6 325 65.8
unitig_744.g24344 Utricularia gibba HOM05D006434 ORTHO05D008069 6.3e-97 358.2 272 68.4
Aa31LG2G4610 Aethionema arabicum HOM05D006434 ORTHO05D008069 8.2e-97 357.8 274 67.2
BcaC06g33735 Brassica carinata HOM05D006434 ORTHO05D008069 8.2e-97 357.8 316 65.5
C07p37520 Brassica napus HOM05D006434 ORTHO05D008069 3.1e-96 355.9 320 65.6
BolC7t44265H Brassica oleracea HOM05D006434 ORTHO05D008069 3.1e-96 355.9 320 65.0
AUR62030560 Chenopodium quinoa HOM05D006434 ORTHO05D008069 5.3e-96 355.1 326 62.6
MSTRG.23964 Avicennia marina HOM05D006434 ORTHO05D008069 1.2e-95 354.0 291 64.3
Lsat_1_v5_gn_4_180280 Lactuca sativa HOM05D006434 ORTHO05D008069 2.0e-95 353.2 282 67.0
Migut.H00876 Erythranthe guttata HOM05D006434 ORTHO05D008069 5.9e-95 351.7 317 60.9
SGA_v2.0_scaffold205G41750 Striga asiatica HOM05D006434 ORTHO05D008069 5.9e-95 351.7 317 60.3
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 1.7e-94 350.1 280 65.0
THA.LOC104823923 Tarenaya hassleriana HOM05D006434 ORTHO05D008069 1.7e-94 350.1 257 66.9
HanXRQChr15g0488521 Helianthus annuus HOM05D006434 ORTHO05D008069 3.6e-92 342.4 257 67.7
FAN09G0258 Fragaria x ananassa HOM05D006434 ORTHO05D008069 4.7e-92 342.0 305 61.6
Haze_14607 Corylus avellana HOM05D006434 ORTHO05D008069 2.3e-91 339.7 279 64.9
EL10Ac2g02902 Beta vulgaris HOM05D006434 ORTHO05D008069 1.2e-90 337.4 341 56.6
CDE02G1577 Ceratophyllum demersum HOM05D006434 ORTHO05D008069 2.8e-89 332.8 287 58.9
CSS0001127 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 6.3e-89 331.6 212 76.4
CSS0033350 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.0e-86 324.3 210 76.2
Ca_04243_v3 Cicer arietinum L. HOM05D006434 ORTHO05D008069 8.5e-86 321.2 224 72.3
HPP92_023566 Vanilla planifolia HOM05D006434 ORTHO05D008069 8.5e-86 321.2 288 59.0
Os03g0736400 Oryza sativa ssp. japonica HOM05D006434 ORTHO05D008069 1.9e-85 320.1 261 64.4
Prupe.3G275100 Prunus persica HOM05D006434 ORTHO05D008069 2.8e-84 316.2 275 62.5
Nitab4.5_0003431g0070 Nicotiana tabacum HOM05D006434 ORTHO05D008069 1.3e-81 307.4 176 83.0
AT3G28460 Arabidopsis thaliana HOM05D006434 ORTHO05D008069 2.8e-81 306.2 279 62.0
Cpa.g.sc14.62 Carica papaya HOM05D006434 ORTHO05D008069 8.6e-78 294.7 176 80.7
CSS0043817 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 2.4e-72 276.6 180 75.0
Zm00001eb215320 Zea mays HOM05D006434 ORTHO05D008069 7.0e-72 275.0 262 57.6
SalBow1G5247 Salvia bowleyana HOM05D006434 ORTHO05D008069 1.5e-69 267.3 323 49.8
Pp3c7_630 Physcomitrium patens HOM05D006434 ORTHO05D008069 2.2e-65 253.4 207 60.9
SMO171G0075 Selaginella moellendorffii HOM05D006434 ORTHO05D008069 7.0e-64 248.4 201 58.7
Lj7A404T37 Lonicera japonica HOM05D006434 ORTHO05D008069 3.5e-63 246.1 230 60.9
AagrBONN_evm.TU.Sc2ySwM_344.3988 Anthoceros agrestis HOM05D006434 ORTHO05D008069 1.7e-62 243.8 196 60.7
MBI01_g13068_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 2.5e-61 240.0 231 57.6
Mapoly0140s0031 Marchantia polymorpha HOM05D006434 ORTHO05D008069 5.2e-59 232.3 208 54.8
Hund13291 Selenicereus undatus HOM05D006434 ORTHO05D008069 1.9e-53 213.8 236 56.8
CBR_g31858 Chara braunii HOM05D006434 ORTHO05D008069 3.4e-50 203.0 209 51.7
SEGI_25544 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 3.6e-44 183.0 162 56.8
PRCOL_00006620 Prasinoderma coloniale HOM05D006434 ORTHO05D008069 1.5e-42 177.6 208 42.8
Cre13.g566300 Chlamydomonas reinhardtii HOM05D006434 ORTHO05D008069 8.4e-41 171.8 202 43.1
SEGI_38692 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 2.1e-39 167.2 123 64.2
MBI01_g13070_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 1.8e-30 137.5 79 79.7
Solyc01g057060.1 Solanum lycopersicum HOM05D006434 ORTHO05D008069 5.1e-30 136.0 97 70.1
MCO03G139 Micromonas commoda HOM05D006434 ORTHO05D008069 2.5e-29 133.7 119 52.9
Sopen01g021310 Solanum pennellii HOM05D006434 ORTHO05D008069 5.6e-29 132.5 91 73.6
MD17G1044100 Malus domestica HOM05D006434 ORTHO05D008069 2.4e-24 117.1 61 91.8
TAR371G0222 Trochodendron aralioides HOM05D006434 ORTHO05D008069 8.7e-22 108.6 75 72.0
Lsat_1_v5_gn_7_34121 Lactuca sativa HOM05D006434 ORTHO05D008069 5.0e-09 66.2 37 81.1
Lj7A404T38 Lonicera japonica HOM05D006434 ORTHO05D008069 2.7e-07 60.5 134 31.3


User provided reference genes

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