Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G064100 Glycine max HOM05D006074 ORTHO05D008728 1.1e-142 510.0 257 100.0
Glyma.19G020800 Glycine max HOM05D006074 ORTHO05D008728 1.8e-102 376.3 257 79.0
Phvul.004G027100 Phaseolus vulgaris HOM05D006074 ORTHO05D008728 1.9e-99 366.3 257 77.4
Medtr1g039990 Medicago truncatula HOM05D006074 ORTHO05D008728 1.8e-97 359.8 257 75.5
TPR.G10370 Trifolium pratense HOM05D006074 ORTHO05D008728 1.5e-96 356.7 257 74.3
Lj2g0007765 Lotus japonicus HOM05D006074 ORTHO05D008728 2.2e-95 352.8 257 73.2
Psat1g075640 Pisum sativum HOM05D006074 ORTHO05D008728 2.9e-95 352.4 257 74.3
arahy.Tifrunner.gnm1.ann1.V4TPJI Arachis hypogaea HOM05D006074 ORTHO05D008728 2.4e-94 349.4 255 73.3
Lalb_Chr21g0318901 Lupinus albus HOM05D006074 ORTHO05D008728 2.4e-94 349.4 257 71.6
arahy.Tifrunner.gnm1.ann1.1Y4ZQN Arachis hypogaea HOM05D006074 ORTHO05D008728 2.7e-93 345.9 255 72.9
Ca_04272_v3 Cicer arietinum L. HOM05D006074 ORTHO05D008728 5.2e-89 331.6 257 70.8
QL02p081203 Quercus lobata HOM05D006074 ORTHO05D008728 6.8e-89 331.3 256 71.5
VMungo0464G0585 Vigna mungo HOM05D006074 ORTHO05D008728 6.8e-89 331.3 240 75.4
CiPaw.03G029000 Carya illinoinensis HOM05D006074 ORTHO05D008728 5.8e-88 328.2 258 69.0
Prupe.3G270100 Prunus persica HOM05D006074 ORTHO05D008728 8.3e-87 324.3 260 68.1
TAR622G0709 Trochodendron aralioides HOM05D006074 ORTHO05D008728 3.2e-86 322.4 258 68.2
TAR729G0002 Trochodendron aralioides HOM05D006074 ORTHO05D008728 3.2e-86 322.4 258 68.2
Actinidia02708 Actinidia chinensis HOM05D006074 ORTHO05D008728 1.6e-85 320.1 258 69.0
RcHm_v2.0_Chr2g0168871 Rosa chinensis HOM05D006074 ORTHO05D008728 2.7e-85 319.3 258 68.2
GSVIVG01011374001 Vitis vinifera HOM05D006074 ORTHO05D008728 2.7e-85 319.3 258 66.7
FAN02G2663 Fragaria x ananassa HOM05D006074 ORTHO05D008728 4.6e-85 318.5 258 68.2
Hma1.2p1_0449F.1_g155300 Hydrangea macrophylla HOM05D006074 ORTHO05D008728 7.8e-85 317.8 256 68.8
FvH4_6g49080 Fragaria vesca HOM05D006074 ORTHO05D008728 1.3e-84 317.0 258 67.8
Sabra17G0072000 Salix brachista HOM05D006074 ORTHO05D008728 1.3e-84 317.0 258 66.3
MD09G1048800 Malus domestica HOM05D006074 ORTHO05D008728 1.7e-84 316.6 258 66.3
Potri.017G080300 Populus trichocarpa HOM05D006074 ORTHO05D008728 1.7e-84 316.6 258 67.1
Peaxi162Scf00451g00822 Petunia axillaris HOM05D006074 ORTHO05D008728 5.0e-84 315.1 257 67.3
COL.COLO4_36112 Corchorus olitorius HOM05D006074 ORTHO05D008728 6.6e-84 314.7 258 65.5
Aqoxy3G03321 Aquilegia oxysepala HOM05D006074 ORTHO05D008728 1.1e-83 313.9 258 65.1
CSS0024892 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 1.1e-83 313.9 258 66.7
PGSC0003DMG400009217 Solanum tuberosum HOM05D006074 ORTHO05D008728 1.5e-83 313.5 257 65.8
Sopen03g012680 Solanum pennellii HOM05D006074 ORTHO05D008728 2.5e-83 312.8 257 66.1
Solyc03g058860.3 Solanum lycopersicum HOM05D006074 ORTHO05D008728 3.3e-83 312.4 257 65.8
Duzib187G1598 Durio zibethinus HOM05D006074 ORTHO05D008728 4.3e-83 312.0 258 65.5
vmacro18203 Vaccinium macrocarpon HOM05D006074 ORTHO05D008728 4.3e-83 312.0 257 65.8
ClCG10G014940 Citrullus lanatus HOM05D006074 ORTHO05D008728 1.2e-82 310.5 258 66.7
Thecc.04G099800 Theobroma cacao HOM05D006074 ORTHO05D008728 1.6e-82 310.1 258 65.5
Lju41C23G10 Lonicera japonica HOM05D006074 ORTHO05D008728 2.8e-82 309.3 260 68.1
PSO591G0110 Papaver somniferum HOM05D006074 ORTHO05D008728 3.6e-82 308.9 260 65.0
PSO832G2479 Papaver somniferum HOM05D006074 ORTHO05D008728 4.7e-82 308.5 260 65.4
Rhsim08G0067900 Rhododendron simsii HOM05D006074 ORTHO05D008728 1.4e-81 307.0 259 66.0
MBI02_g10680_MAGBIO Magnolia biondii HOM05D006074 ORTHO05D008728 1.8e-81 306.6 258 65.5
CSS0026498 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 4.0e-81 305.4 258 66.7
MELO3C009883.2 Cucumis melo HOM05D006074 ORTHO05D008728 4.0e-81 305.4 258 65.9
CsaV3_3G041590 Cucumis sativus L. HOM05D006074 ORTHO05D008728 4.0e-81 305.4 258 65.1
Gohir.A07G215200 Gossypium hirsutum HOM05D006074 ORTHO05D008728 4.0e-81 305.4 258 64.7
Gohir.D07G222100 Gossypium hirsutum HOM05D006074 ORTHO05D008728 6.8e-81 304.7 258 64.3
BcaC06g30896 Brassica carinata HOM05D006074 ORTHO05D008728 8.9e-81 304.3 259 63.3
A06p40350 Brassica napus HOM05D006074 ORTHO05D008728 8.9e-81 304.3 259 63.3
BraA06t26953Z Brassica rapa HOM05D006074 ORTHO05D008728 8.9e-81 304.3 259 63.3
Oeu060929.1 Olea europaea HOM05D006074 ORTHO05D008728 8.9e-81 304.3 258 64.7
CAN.G579.8 Capsicum annuum HOM05D006074 ORTHO05D008728 1.5e-80 303.5 257 63.8
Carub.0005s0731 Capsella rubella HOM05D006074 ORTHO05D008728 2.0e-80 303.1 259 62.2
Sp2g17410 Schrenkiella parvula HOM05D006074 ORTHO05D008728 2.6e-80 302.8 259 62.2
Aa31LG2G4460 Aethionema arabicum HOM05D006074 ORTHO05D008728 3.4e-80 302.4 258 62.0
Cc07_g03180 Coffea canephora HOM05D006074 ORTHO05D008728 4.4e-80 302.0 257 64.2
AT3G28760 Arabidopsis thaliana HOM05D006074 ORTHO05D008728 5.8e-80 301.6 259 62.2
EL10Ac2g02949 Beta vulgaris HOM05D006074 ORTHO05D008728 5.8e-80 301.6 258 62.4
ATR0564G024 Amborella trichopoda HOM05D006074 ORTHO05D008728 1.3e-79 300.4 261 63.2
DCAR_021653 Daucus carota HOM05D006074 ORTHO05D008728 1.3e-79 300.4 258 63.2
BcaC06g33639 Brassica carinata HOM05D006074 ORTHO05D008728 1.7e-79 300.1 259 62.5
C07p37700 Brassica napus HOM05D006074 ORTHO05D008728 1.7e-79 300.1 259 62.5
AUR62038861 Chenopodium quinoa HOM05D006074 ORTHO05D008728 1.7e-79 300.1 257 62.6
Lsat_1_v5_gn_4_177200 Lactuca sativa HOM05D006074 ORTHO05D008728 1.7e-79 300.1 260 62.7
Migut.H00904 Erythranthe guttata HOM05D006074 ORTHO05D008728 2.2e-79 299.7 258 64.3
Eucgr.J01218 Eucalyptus grandis HOM05D006074 ORTHO05D008728 2.2e-79 299.7 259 64.1
PGR083G0972 Punica granatum HOM05D006074 ORTHO05D008728 2.9e-79 299.3 260 63.8
BolC7t44287H Brassica oleracea HOM05D006074 ORTHO05D008728 4.9e-79 298.5 259 62.2
AUR62031615 Chenopodium quinoa HOM05D006074 ORTHO05D008728 8.3e-79 297.7 257 63.4
Sc14g0005980 Simmondsia chinensis HOM05D006074 ORTHO05D008728 1.1e-78 297.4 257 63.0
AL5G18490 Arabidopsis lyrata HOM05D006074 ORTHO05D008728 1.4e-78 297.0 263 61.6
THA.LOC104823933 Tarenaya hassleriana HOM05D006074 ORTHO05D008728 2.4e-78 296.2 259 61.8
Gorai.001G256400 Gossypium raimondii HOM05D006074 ORTHO05D008728 7.1e-78 294.7 292 57.5
CANSAT64G2140 Cannabis sativa HOM05D006074 ORTHO05D008728 1.2e-77 293.9 258 63.6
SalBow1G4287 Salvia bowleyana HOM05D006074 ORTHO05D008728 1.2e-77 293.9 258 62.0
HanXRQChr09g0265461 Helianthus annuus HOM05D006074 ORTHO05D008728 1.6e-77 293.5 258 61.2
CANSAT64G1183 Cannabis sativa HOM05D006074 ORTHO05D008728 2.1e-77 293.1 258 63.6
ECA232G4667 Erigeron canadensis HOM05D006074 ORTHO05D008728 2.1e-77 293.1 257 63.0
Os03g0170300 Oryza sativa ssp. japonica HOM05D006074 ORTHO05D008728 2.1e-77 293.1 257 61.9
TWI34G1337 Tripterygium wilfordii HOM05D006074 ORTHO05D008728 2.1e-77 293.1 250 64.0
Thhalv10004593m.g Eutrema salsugineum HOM05D006074 ORTHO05D008728 2.7e-77 292.7 263 60.8
SGA_v2.0_scaffold59G20672 Striga asiatica HOM05D006074 ORTHO05D008728 1.3e-76 290.4 258 61.6
Atru.BG.207.p Acer truncatum HOM05D006074 ORTHO05D008728 1.9e-75 286.6 255 64.3
Zm00001eb402270 Zea mays HOM05D006074 ORTHO05D008728 3.3e-75 285.8 257 60.3
Cpa.g.sc14.19 Carica papaya HOM05D006074 ORTHO05D008728 4.3e-75 285.4 304 54.6
CSS0026374 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 6.2e-74 281.6 258 62.4
Hund15626 Selenicereus undatus HOM05D006074 ORTHO05D008728 6.2e-74 281.6 263 60.5
Sed0009974 Sechium edule HOM05D006074 ORTHO05D008728 1.5e-72 276.9 246 61.4
Ciclev10012867m.g Citrus clementina HOM05D006074 ORTHO05D008728 3.2e-70 269.2 227 66.1
CSS0037615 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 3.5e-69 265.8 266 58.3
Dinv33738 Davidia involucrata HOM05D006074 ORTHO05D008728 8.6e-68 261.2 258 58.9
AagrBONN_evm.TU.Sc2ySwM_228.462 Anthoceros agrestis HOM05D006074 ORTHO05D008728 1.8e-65 253.4 262 55.3
Nitab4.5_0003081g0050 Nicotiana tabacum HOM05D006074 ORTHO05D008728 8.9e-65 251.1 214 64.0
Nitab4.5_0000002g0350 Nicotiana tabacum HOM05D006074 ORTHO05D008728 2.6e-64 249.6 214 63.6
Nn4g23084 Nelumbo nucifera HOM05D006074 ORTHO05D008728 4.9e-63 245.4 216 62.5
Pp3c9_19570 Physcomitrium patens HOM05D006074 ORTHO05D008728 1.9e-62 243.4 257 53.7
Pp3c10_1080 Physcomitrium patens HOM05D006074 ORTHO05D008728 3.0e-60 236.1 257 51.4
Mapoly0005s0075 Marchantia polymorpha HOM05D006074 ORTHO05D008728 1.2e-56 224.2 251 50.2
Manes.15G177000 Manihot esculenta HOM05D006074 ORTHO05D008728 4.5e-56 222.2 190 62.1
Lsat_1_v5_gn_4_177220 Lactuca sativa HOM05D006074 ORTHO05D008728 9.9e-56 221.1 217 55.8
SEGI_14685 Sequoiadendron giganteum HOM05D006074 ORTHO05D008728 5.6e-51 205.3 190 55.3
FAN14G0759 Fragaria x ananassa HOM05D006074 ORTHO05D008728 1.3e-44 184.1 125 78.4
Pp3c15_19890 Physcomitrium patens HOM05D006074 ORTHO05D008728 2.5e-43 179.9 242 44.6
Cre05.g248250 Chlamydomonas reinhardtii HOM05D006074 ORTHO05D008728 2.4e-41 173.3 325 38.2
MCO08G127 Micromonas commoda HOM05D006074 ORTHO05D008728 2.9e-39 166.4 262 40.5
CDE02G2631 Ceratophyllum demersum HOM05D006074 ORTHO05D008728 3.0e-36 156.4 160 52.5
unitig_21.g20922 Utricularia gibba HOM05D006074 ORTHO05D008728 4.3e-35 152.5 156 52.6
Pp3c2_18540 Physcomitrium patens HOM05D006074 ORTHO05D020966 4.1e-33 146.0 214 42.1
Pp3c1_20750 Physcomitrium patens HOM05D006074 ORTHO05D020966 1.3e-31 141.0 212 40.6
Pp3c1_20753 Physcomitrium patens HOM05D006074 ORTHO05D020966 1.3e-31 141.0 212 40.6
Pp3c10_2120 Physcomitrium patens HOM05D006074 ORTHO05D020966 2.9e-31 139.8 217 39.2
PRCOL_00003957 Prasinoderma coloniale HOM05D006074 ORTHO05D008728 1.0e-28 131.3 200 42.5
Atru.chr3.96 Acer truncatum HOM05D006074 ORTHO05D026256 8.2e-18 95.1 74 70.3
Actinidia17537 Actinidia chinensis HOM05D006074 ORTHO05D026256 6.9e-17 92.0 60 78.3
PGSC0003DMG400013970 Solanum tuberosum HOM05D006074 ORTHO05D008728 1.2e-16 91.3 61 70.5
CDE02G1972 Ceratophyllum demersum HOM05D006074 ORTHO05D026256 2.0e-16 90.5 65 70.8
CARHR151760 Cardamine hirsuta HOM05D006074 ORTHO05D008728 1.0e-15 88.2 72 62.5
Sabra17G0081400 Salix brachista HOM05D006074 ORTHO05D008728 1.4e-14 84.3 63 68.3
Pp3c8_20190 Physcomitrium patens HOM05D006074 ORTHO05D026055 8.8e-12 75.1 211 27.5
Pp3c20_4730 Physcomitrium patens HOM05D006074 ORTHO05D026055 2.0e-11 73.9 207 30.4
HanXRQChr09g0253281 Helianthus annuus HOM05D006074 ORTHO05D008728 1.3e-10 71.2 55 67.3
Pp3c23_20410 Physcomitrium patens HOM05D006074 ORTHO05D026055 2.2e-10 70.5 214 30.4
Pp3c20_10280 Physcomitrium patens HOM05D006074 ORTHO05D026055 2.9e-07 60.1 211 24.2
SEGI_18941 Sequoiadendron giganteum HOM05D006074 ORTHO05D026256 4.2e-06 56.2 49 61.2


User provided reference genes

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