Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G059000 Glycine max HOM05D005960 ORTHO05D007537 1.6e-269 932.2 462 100.0
Glyma.19G027400 Glycine max HOM05D005960 ORTHO05D007537 4.7e-250 867.5 450 96.0
Phvul.004G033300 Phaseolus vulgaris HOM05D005960 ORTHO05D007537 3.0e-244 848.2 450 93.3
VMungo0464G0831 Vigna mungo HOM05D005960 ORTHO05D007537 3.6e-242 841.3 450 92.9
Lj2g0023614 Lotus japonicus HOM05D005960 ORTHO05D007537 8.7e-236 820.1 452 90.3
Ca_04868_v3 Cicer arietinum L. HOM05D005960 ORTHO05D007537 3.4e-232 808.1 450 88.2
TPR.G26197 Trifolium pratense HOM05D005960 ORTHO05D007537 5.8e-232 807.4 451 88.2
Psat1g068640 Pisum sativum HOM05D005960 ORTHO05D007537 2.7e-229 798.5 452 86.9
arahy.Tifrunner.gnm1.ann1.8N3EDT Arachis hypogaea HOM05D005960 ORTHO05D007537 2.3e-228 795.4 460 87.2
Medtr6g013750 Medicago truncatula HOM05D005960 ORTHO05D007537 1.9e-227 792.3 451 86.7
arahy.Tifrunner.gnm1.ann1.7U9LX7 Arachis hypogaea HOM05D005960 ORTHO05D007537 2.5e-227 792.0 460 87.0
Cfa007624 Carpinus fangiana HOM05D005960 ORTHO05D007537 1.4e-225 786.2 454 84.6
Lalb_Chr06g0175111 Lupinus albus HOM05D005960 ORTHO05D007537 4.6e-221 771.2 458 84.5
TAR371G0518 Trochodendron aralioides HOM05D005960 ORTHO05D007537 2.5e-219 765.4 450 83.8
CiPaw.04G058500 Carya illinoinensis HOM05D005960 ORTHO05D007537 4.3e-219 764.6 451 83.6
Manes.01G099100 Manihot esculenta HOM05D005960 ORTHO05D007537 1.3e-218 763.1 453 82.6
Atru.chr8.386 Acer truncatum HOM05D005960 ORTHO05D007537 6.3e-218 760.8 454 83.0
GSVIVG01011490001 Vitis vinifera HOM05D005960 ORTHO05D007537 6.3e-218 760.8 453 83.0
RcHm_v2.0_Chr2g0166541 Rosa chinensis HOM05D005960 ORTHO05D007537 1.8e-217 759.2 454 82.8
FAN05G2671 Fragaria x ananassa HOM05D005960 ORTHO05D007537 2.6e-216 755.4 457 81.4
Eucgr.I01985 Eucalyptus grandis HOM05D005960 ORTHO05D007537 3.4e-216 755.0 456 80.9
FvH4_6g47510 Fragaria vesca HOM05D005960 ORTHO05D007537 3.4e-216 755.0 454 81.9
QL02p039732 Quercus lobata HOM05D005960 ORTHO05D007537 4.5e-216 754.6 461 82.2
QL02p039477 Quercus lobata HOM05D005960 ORTHO05D007537 7.6e-216 753.8 461 82.0
MD17G1056600 Malus domestica HOM05D005960 ORTHO05D007537 1.1e-214 750.0 456 82.2
CSS0005506 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 2.7e-213 745.3 456 81.8
TWI60G0302 Tripterygium wilfordii HOM05D005960 ORTHO05D007537 2.7e-213 745.3 449 81.5
CSS0003743 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 3.5e-213 745.0 456 81.8
Actinidia01975 Actinidia chinensis HOM05D005960 ORTHO05D007537 4.6e-213 744.6 460 81.7
PGR004G2687 Punica granatum HOM05D005960 ORTHO05D007537 3.9e-212 741.5 456 80.7
CANSAT64G2728 Cannabis sativa HOM05D005960 ORTHO05D007537 5.1e-212 741.1 452 81.4
Potri.017G090100 Populus trichocarpa HOM05D005960 ORTHO05D007537 1.5e-211 739.6 455 80.7
Hma1.2p1_3044F.1_g332080 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 1.9e-211 739.2 453 81.2
vmacro05665 Vaccinium macrocarpon HOM05D005960 ORTHO05D007537 4.3e-211 738.0 453 80.6
Cpa.g.sc14.144 Carica papaya HOM05D005960 ORTHO05D007537 5.7e-211 737.6 453 80.8
Ciclev10011697m.g Citrus clementina HOM05D005960 ORTHO05D007537 5.7e-211 737.6 454 80.8
Haze_14472 Corylus avellana HOM05D005960 ORTHO05D007537 9.7e-211 736.9 517 73.5
MBI16_g15532_MAGBIO Magnolia biondii HOM05D005960 ORTHO05D007537 2.2e-210 735.7 453 81.5
Rhsim10G0047200 Rhododendron simsii HOM05D005960 ORTHO05D007537 3.7e-210 734.9 472 77.8
ClCG11G004630 Citrullus lanatus HOM05D005960 ORTHO05D007537 4.8e-210 734.6 452 81.9
Rhsim10G0046600 Rhododendron simsii HOM05D005960 ORTHO05D007537 4.1e-209 731.5 472 77.8
MELO3C022021.2 Cucumis melo HOM05D005960 ORTHO05D007537 5.3e-209 731.1 452 82.1
Sabra17G0079200 Salix brachista HOM05D005960 ORTHO05D007537 6.9e-209 730.7 471 78.1
Thecc.04G090800 Theobroma cacao HOM05D005960 ORTHO05D007537 9.0e-209 730.3 458 78.8
Duzib147G1008 Durio zibethinus HOM05D005960 ORTHO05D007537 3.4e-208 728.4 456 78.9
Oeu000854.1 Olea europaea HOM05D005960 ORTHO05D007537 2.9e-207 725.3 469 77.8
CsaV3_5G038400 Cucumis sativus L. HOM05D005960 ORTHO05D007537 3.8e-207 724.9 451 80.5
THA.LOC104802965 Tarenaya hassleriana HOM05D005960 ORTHO05D007537 8.5e-207 723.8 450 79.6
Sed0006667 Sechium edule HOM05D005960 ORTHO05D007537 3.2e-206 721.8 452 81.4
Aqoxy3G00406 Aquilegia oxysepala HOM05D005960 ORTHO05D007537 4.2e-206 721.5 450 78.7
Gohir.A11G071600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 4.2e-206 721.5 459 79.3
Gorai.007G081300 Gossypium raimondii HOM05D005960 ORTHO05D007537 2.1e-205 719.2 459 78.9
EL10Ac2g03055 Beta vulgaris HOM05D005960 ORTHO05D007537 3.6e-205 718.4 448 79.7
COL.COLO4_21375 Corchorus olitorius HOM05D005960 ORTHO05D007537 2.3e-204 715.7 456 78.7
AUR62042562 Chenopodium quinoa HOM05D005960 ORTHO05D007537 1.5e-203 713.0 456 78.1
HanXRQChr14g0448721 Helianthus annuus HOM05D005960 ORTHO05D007537 4.8e-202 708.0 457 78.3
CAN.G734.6 Capsicum annuum HOM05D005960 ORTHO05D007537 1.5e-200 703.0 458 77.1
AT3G01060 Arabidopsis thaliana HOM05D005960 ORTHO05D007537 2.6e-200 702.2 456 77.4
Migut.H00653 Erythranthe guttata HOM05D005960 ORTHO05D007537 3.4e-200 701.8 452 76.5
PSO421G0059 Papaver somniferum HOM05D005960 ORTHO05D007537 3.4e-200 701.8 452 77.7
Carub.0003s0111 Capsella rubella HOM05D005960 ORTHO05D007537 1.7e-199 699.5 455 77.8
Thhalv10020707m.g Eutrema salsugineum HOM05D005960 ORTHO05D007537 1.7e-199 699.5 456 77.4
Sp3g01070 Schrenkiella parvula HOM05D005960 ORTHO05D007537 2.9e-199 698.7 431 79.6
Os05g0512200 Oryza sativa ssp. japonica HOM05D005960 ORTHO05D007537 5.0e-199 698.0 408 83.6
DCAR_005553 Daucus carota HOM05D005960 ORTHO05D007537 8.5e-199 697.2 433 81.1
PSO013G0364 Papaver somniferum HOM05D005960 ORTHO05D007537 1.1e-198 696.8 452 77.4
AL3G11200 Arabidopsis lyrata HOM05D005960 ORTHO05D007537 5.5e-198 694.5 456 77.2
ECA238G1943 Erigeron canadensis HOM05D005960 ORTHO05D007537 2.7e-197 692.2 456 77.0
BNapus_Darmor_BZH_scaffold_97p00050 Brassica napus HOM05D005960 ORTHO05D007537 6.1e-197 691.0 449 78.0
BolC1t05923H Brassica oleracea HOM05D005960 ORTHO05D007537 7.9e-197 690.6 449 77.7
Aa31LG5G12560 Aethionema arabicum HOM05D005960 ORTHO05D007537 1.4e-196 689.9 394 85.0
CARHR076010 Cardamine hirsuta HOM05D005960 ORTHO05D007537 2.3e-196 689.1 456 76.8
BNapus_Darmor_BZH_scaffold_113p00110 Brassica napus HOM05D005960 ORTHO05D007537 8.8e-196 687.2 454 77.3
Sopen03g016610 Solanum pennellii HOM05D005960 ORTHO05D007537 2.0e-195 686.0 426 80.8
BraA01t04634Z Brassica rapa HOM05D005960 ORTHO05D007537 3.3e-195 685.3 454 77.1
Solyc03g013240.4 Solanum lycopersicum HOM05D005960 ORTHO05D007537 1.3e-194 683.3 424 80.4
ATR0111G015 Amborella trichopoda HOM05D005960 ORTHO05D007537 5.3e-193 677.9 449 74.8
SalBow1G6551 Salvia bowleyana HOM05D005960 ORTHO05D007537 1.5e-190 669.8 464 74.8
FAN14G4646 Fragaria x ananassa HOM05D005960 ORTHO05D007537 9.4e-190 667.2 454 74.7
Lsat_1_v5_gn_2_87860 Lactuca sativa HOM05D005960 ORTHO05D007537 1.2e-189 666.8 457 74.2
unitig_736.g22244 Utricularia gibba HOM05D005960 ORTHO05D007537 5.2e-188 661.4 455 72.3
Lj4C116G4 Lonicera japonica HOM05D005960 ORTHO05D007537 4.4e-187 658.3 460 73.5
Peaxi162Scf00451g00429 Petunia axillaris HOM05D005960 ORTHO05D007537 7.5e-187 657.5 455 74.7
Nn4g23343 Nelumbo nucifera HOM05D005960 ORTHO05D007537 1.3e-186 656.8 358 89.4
FAN02G1813 Fragaria x ananassa HOM05D005960 ORTHO05D007537 4.5e-184 648.3 357 88.2
Nitab4.5_0001637g0110 Nicotiana tabacum HOM05D005960 ORTHO05D007537 7.2e-182 641.0 460 72.0
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 4.7e-181 638.3 452 74.1
BcaC09g47681 Brassica carinata HOM05D005960 ORTHO05D007537 1.5e-179 633.3 449 72.8
Sc10g0003290 Simmondsia chinensis HOM05D005960 ORTHO05D007537 3.7e-178 628.6 370 82.4
SEGI_05647 Sequoiadendron giganteum HOM05D005960 ORTHO05D007537 1.7e-175 619.8 393 75.3
Prupe.3G258900 Prunus persica HOM05D005960 ORTHO05D007537 4.4e-171 605.1 332 89.2
Mapoly0015s0039 Marchantia polymorpha HOM05D005960 ORTHO05D007537 1.6e-165 586.6 399 70.9
Gohir.D11G075600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 4.0e-164 582.0 332 84.9
Pp3c2_13280 Physcomitrium patens HOM05D005960 ORTHO05D007537 4.0e-164 582.0 424 66.7
SMO335G0027 Selaginella moellendorffii HOM05D005960 ORTHO05D007537 2.9e-162 575.9 416 68.0
Cc07_g03890 Coffea canephora HOM05D005960 ORTHO05D007537 7.0e-161 571.2 353 81.6
AUR62018147 Chenopodium quinoa HOM05D005960 ORTHO05D007537 5.6e-158 561.6 357 78.4
Nitab4.5_0005196g0010 Nicotiana tabacum HOM05D005960 ORTHO05D007537 1.5e-155 553.5 456 65.6
Zm00001eb292620 Zea mays HOM05D005960 ORTHO05D007537 3.5e-152 542.3 308 84.7
Actinidia01967 Actinidia chinensis HOM05D005960 ORTHO05D007537 4.6e-152 542.0 385 73.8
AagrBONN_evm.TU.Sc2ySwM_362.2259 Anthoceros agrestis HOM05D005960 ORTHO05D007537 8.6e-151 537.7 381 67.2
CBR_g61504 Chara braunii HOM05D005960 ORTHO05D007537 5.2e-140 501.9 414 60.6
HPP92_018459 Vanilla planifolia HOM05D005960 ORTHO05D007537 5.2e-140 501.9 326 75.2
MSTRG.3021 Avicennia marina HOM05D005960 ORTHO05D007537 1.6e-136 490.3 279 85.7
Dinv11487 Davidia involucrata HOM05D005960 ORTHO05D007537 1.6e-136 490.3 311 79.4
CDE04G1831 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 2.0e-131 473.4 401 63.3
CDE07G2056 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 7.6e-131 471.5 317 72.2
Hma1.2p1_1813F.1_g303790 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 3.1e-124 449.5 236 89.8
Hma1.2p1_3044F.1_g332082 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 3.1e-124 449.5 236 89.8
FAN09G3416 Fragaria x ananassa HOM05D005960 ORTHO05D007537 1.2e-123 447.6 413 59.8
TAR627G0454 Trochodendron aralioides HOM05D005960 ORTHO05D007537 3.5e-120 436.0 332 68.7
Cre13.g562750 Chlamydomonas reinhardtii HOM05D005960 ORTHO05D007537 2.5e-110 403.3 413 48.4
MD09G1061300 Malus domestica HOM05D005960 ORTHO05D007537 6.7e-87 325.5 242 72.3
MCO03G230 Micromonas commoda HOM05D005960 ORTHO05D007537 1.8e-79 300.8 320 48.8
MCO05G128 Micromonas commoda HOM05D005960 ORTHO05D007537 6.8e-63 245.7 344 41.3
TPR.G22619 Trifolium pratense HOM05D005960 ORTHO05D007537 9.1e-60 235.3 146 80.1
PRCOL_00002980 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 1.0e-55 221.9 402 36.3
PRCOL_00004151 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 6.3e-53 212.6 383 36.8
MCO08G069 Micromonas commoda HOM05D005960 ORTHO05D007537 1.6e-48 198.0 349 35.2
PRCOL_00003347 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 6.1e-48 196.1 341 35.2
CDE07G0145 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 1.2e-46 191.8 117 83.8
Potri.004G125301 Populus trichocarpa HOM05D005960 ORTHO05D007537 2.9e-45 187.2 151 63.6
MCO08G121 Micromonas commoda HOM05D005960 ORTHO05D007537 3.9e-42 176.8 363 32.8
Cc07_g03900 Coffea canephora HOM05D005960 ORTHO05D007537 5.0e-42 176.4 102 82.4
AUR62018149 Chenopodium quinoa HOM05D005960 ORTHO05D007537 9.8e-38 162.2 100 80.0
EL10Ac2g03064 Beta vulgaris HOM05D005960 ORTHO05D007537 4.9e-37 159.8 96 84.4
Oeu061493.1 Olea europaea HOM05D005960 ORTHO05D007537 8.4e-21 105.9 51 86.3
MD09G1061200 Malus domestica HOM05D005960 ORTHO05D007537 2.1e-19 101.3 87 58.6
PGSC0003DMG400033541 Solanum tuberosum HOM05D005960 ORTHO05D007537 1.2e-14 85.5 62 75.8
MCO08G023 Micromonas commoda HOM05D005960 ORTHO05D270145 1.0e-10 72.4 150 30.0
Zm00001eb250570 Zea mays HOM05D005960 ORTHO05D051632 2.8e-08 64.3 42 78.6
Zm00001eb030310 Zea mays HOM05D005960 ORTHO05D051632 3.6e-08 63.9 38 84.2


User provided reference genes

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