Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 0.0e+00 1852.4 932 100.0
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 0.0e+00 1652.9 932 90.3
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 0.0e+00 1438.3 938 79.0
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 0.0e+00 1406.0 939 77.5
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 3.8e-190 669.5 961 41.7
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 9.1e-184 648.3 964 40.4
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 7.7e-183 645.2 964 39.9
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 1.7e-182 644.0 963 40.2
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 8.3e-177 625.2 1002 39.7
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 1.9e-173 614.0 933 40.1
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 8.0e-172 608.6 966 38.1
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 2.6e-170 603.6 963 38.8
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 1.3e-166 591.3 952 37.9
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 1.5e-165 587.8 968 38.3
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 9.5e-165 585.1 955 38.6
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 1.4e-163 581.3 960 38.2
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 9.8e-162 575.1 973 39.0
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 8.3e-161 572.0 973 39.1
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 9.2e-160 568.5 910 38.4
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 2.0e-159 567.4 974 36.9
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 2.0e-159 567.4 961 38.8
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 3.5e-159 566.6 967 37.4
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 1.1e-157 561.6 955 37.2
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 4.0e-155 553.1 960 37.3
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 5.2e-155 552.7 954 36.9
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 1.2e-154 551.6 955 37.1
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 4.4e-154 549.7 954 36.6
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 2.9e-153 547.0 959 36.7
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 1.6e-151 541.2 948 36.9
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 6.0e-151 539.3 965 38.0
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 6.0e-151 539.3 956 37.4
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 7.8e-151 538.9 955 36.8
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 8.6e-150 535.4 958 36.8
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 4.7e-148 529.6 960 37.0
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 6.8e-147 525.8 973 36.4
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 9.9e-146 521.9 944 36.3
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 3.2e-144 516.9 959 35.3
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 2.1e-143 514.2 987 36.5
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 3.5e-143 513.5 959 35.3
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 4.6e-143 513.1 965 35.6
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 1.9e-141 507.7 970 36.7
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 5.2e-139 499.6 954 36.2
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 1.5e-138 498.0 956 34.5
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 1.2e-135 488.4 1002 35.0
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.8e-131 474.6 965 32.0
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 5.8e-130 469.5 974 34.6
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 7.6e-130 469.2 939 34.3
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 2.9e-129 467.2 965 31.6
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 4.9e-129 466.5 307 81.1
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 4.2e-128 463.4 960 33.2
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 4.2e-128 463.4 779 37.2
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 9.3e-128 462.2 960 33.4
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 3.5e-127 460.3 954 34.6
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 4.6e-127 459.9 967 34.0
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 5.6e-125 453.0 989 32.8
Phvul.005G124501 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.3e-124 451.8 335 71.0
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 3.6e-124 450.3 987 33.2
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 6.2e-124 449.5 963 33.1
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 6.2e-124 449.5 958 32.5
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 4.0e-123 446.8 978 32.6
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 6.9e-123 446.0 978 32.8
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 1.7e-121 441.4 946 33.4
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 3.8e-121 440.3 956 32.8
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 6.4e-121 439.5 899 34.9
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 1.1e-120 438.7 969 32.8
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 1.4e-120 438.3 969 33.0
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 4.2e-120 436.8 976 33.1
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 7.1e-120 436.0 985 32.1
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 2.1e-119 434.5 974 33.2
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 6.0e-119 433.0 967 32.6
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 6.0e-119 433.0 848 34.4
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 1.8e-118 431.4 973 33.1
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 1.8e-118 431.4 973 33.1
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 5.1e-118 429.9 964 32.6
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 8.7e-118 429.1 958 33.2
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 3.7e-116 423.7 941 32.7
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 1.2e-114 418.7 980 31.2
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 6.4e-113 412.9 970 32.6
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 2.5e-112 411.0 1066 31.1
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 7.1e-112 409.5 954 30.8
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 7.1e-112 409.5 960 31.2
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 2.1e-111 407.9 970 32.7
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 6.7e-110 402.9 899 32.7
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 4.3e-109 400.2 875 32.9
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 2.8e-108 397.5 952 31.0
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 4.8e-108 396.7 971 30.0
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 1.1e-107 395.6 952 30.6
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 1.2e-106 392.1 954 30.0
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 1.5e-106 391.7 656 37.8
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 2.7e-103 380.9 961 30.8
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 4.6e-103 380.2 1008 30.7
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 5.9e-98 363.2 941 30.3
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 2.8e-92 344.4 960 30.2
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 3.9e-86 323.9 1008 28.2
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 5.0e-81 307.0 930 29.9
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 7.2e-80 303.1 780 29.0
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 2.1e-79 301.6 801 29.2
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 8.8e-70 269.6 1042 25.5
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 8.5e-65 253.1 432 37.0
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 3.4e-61 241.1 791 26.3
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 1.7e-49 202.2 421 34.7
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 2.3e-38 165.2 571 26.6
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 6.0e-34 150.6 620 25.6
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 3.3e-32 144.8 243 36.6
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 2.3e-30 138.7 502 25.3
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 4.6e-26 124.4 103 66.0
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 3.9e-25 121.3 103 62.1
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 1.1e-24 119.8 936 23.5
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.5e-24 119.4 103 63.1
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 1.5e-24 119.4 103 62.1
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 1.5e-24 119.4 103 63.1
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 3.3e-24 118.2 109 60.6
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 5.2e-22 110.9 94 62.8
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 6.8e-22 110.5 248 32.3
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 2.4e-19 102.1 109 48.6
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 4.2e-19 101.3 229 30.1
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 1.7e-17 95.9 109 45.9
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 8.7e-17 93.6 425 24.7
Aqoxy5G03189 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 8.1e-15 87.0 240 25.8
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 5.3e-14 84.3 82 59.8
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 1.2e-13 83.2 66 68.2
BcaC01g00652 Brassica carinata HOM05D004959 ORTHO05D005961 1.3e-07 63.2 45 66.7
BolC3t20554H Brassica oleracea HOM05D004959 ORTHO05D005961 1.6e-07 62.8 49 61.2
C03p82730 Brassica napus HOM05D004959 ORTHO05D005961 2.1e-07 62.4 45 64.4
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 1.8e-06 59.3 108 35.2
Os01g0103700 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 9.0e-06 57.0 133 30.1


User provided reference genes

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