Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G052600 Glycine max HOM05D005971 ORTHO05D007459 6.8e-50 200.3 96 100.0
Phvul.005G056400 Phaseolus vulgaris HOM05D005971 ORTHO05D007459 2.3e-34 148.7 127 63.0
VMungo1080G0173 Vigna mungo HOM05D005971 ORTHO05D007459 3.4e-33 144.8 127 59.1
Glyma.15G255000 Glycine max HOM05D005971 ORTHO05D007459 2.7e-30 135.2 127 59.1
Lj3g0007743 Lotus japonicus HOM05D005971 ORTHO05D007459 6.8e-26 120.6 127 52.8
Lalb_Chr25g0285011 Lupinus albus HOM05D005971 ORTHO05D007459 8.9e-26 120.2 127 51.2
Ca_03684_v3 Cicer arietinum L. HOM05D005971 ORTHO05D007459 1.2e-25 119.8 128 53.9
Medtr2g069560 Medicago truncatula HOM05D005971 ORTHO05D007459 4.4e-25 117.9 127 55.1
TPR.G9756 Trifolium pratense HOM05D005971 ORTHO05D007459 4.4e-25 117.9 127 55.1
Psat1g011400 Pisum sativum HOM05D005971 ORTHO05D007459 2.4e-23 112.1 127 52.8
arahy.Tifrunner.gnm1.ann1.MUD8D6 Arachis hypogaea HOM05D005971 ORTHO05D007459 5.4e-23 110.9 127 51.2
Glyma.13G098800 Glycine max HOM05D005971 ORTHO05D007459 3.6e-19 98.2 51 90.2
Glyma.13G358366 Glycine max HOM05D005971 ORTHO05D007459 3.6e-19 98.2 51 90.2
Glyma.13G358300 Glycine max HOM05D005971 ORTHO05D007459 1.2e-17 93.2 51 84.3
QL04p073974 Quercus lobata HOM05D005971 ORTHO05D007459 1.5e-17 92.8 124 44.4
Dinv19623 Davidia involucrata HOM05D005971 ORTHO05D007459 2.0e-17 92.4 126 42.9
TAR626G0017 Trochodendron aralioides HOM05D005971 ORTHO05D007459 2.2e-16 89.0 124 41.9
FAN11G3334 Fragaria x ananassa HOM05D005971 ORTHO05D007459 3.7e-16 88.2 126 38.1
FAN21G1476 Fragaria x ananassa HOM05D005971 ORTHO05D007459 3.7e-16 88.2 126 38.1
Prupe.4G140600 Prunus persica HOM05D005971 ORTHO05D007459 1.4e-15 86.3 123 41.5
FvH4_3g15860 Fragaria vesca HOM05D005971 ORTHO05D007459 1.9e-15 85.9 126 37.3
Nn7g37820 Nelumbo nucifera HOM05D005971 ORTHO05D007459 1.9e-15 85.9 124 40.3
Cc05_g16010 Coffea canephora HOM05D005971 ORTHO05D007459 5.4e-15 84.3 126 38.1
FAN16G0465 Fragaria x ananassa HOM05D005971 ORTHO05D007459 5.4e-15 84.3 126 37.3
Thecc.07G154200 Theobroma cacao HOM05D005971 ORTHO05D007459 5.4e-15 84.3 126 38.1
Cfa019419 Carpinus fangiana HOM05D005971 ORTHO05D007459 9.2e-15 83.6 126 40.5
RcHm_v2.0_Chr5g0026671 Rosa chinensis HOM05D005971 ORTHO05D007459 9.2e-15 83.6 126 37.3
CSS0033662 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 1.2e-14 83.2 124 40.3
CSS0049989 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 1.2e-14 83.2 124 40.3
Ciclev10018677m.g Citrus clementina HOM05D005971 ORTHO05D007459 2.7e-14 82.0 126 36.5
MD05G1219300 Malus domestica HOM05D005971 ORTHO05D007459 2.7e-14 82.0 125 38.4
Aqoxy2G04113 Aquilegia oxysepala HOM05D005971 ORTHO05D007459 7.8e-14 80.5 126 34.9
CANSAT80G2256 Cannabis sativa HOM05D005971 ORTHO05D007459 1.3e-13 79.7 126 36.5
Duzib268G0338 Durio zibethinus HOM05D005971 ORTHO05D007459 1.3e-13 79.7 126 38.1
GSVIVG01020427001 Vitis vinifera HOM05D005971 ORTHO05D007459 5.1e-13 77.8 126 34.1
ClCG11G016380 Citrullus lanatus HOM05D005971 ORTHO05D007459 1.1e-12 76.6 126 37.3
Gohir.D13G157600 Gossypium hirsutum HOM05D005971 ORTHO05D007459 1.1e-12 76.6 126 37.3
Gorai.013G178300 Gossypium raimondii HOM05D005971 ORTHO05D007459 1.1e-12 76.6 126 37.3
GSVIVG01020430001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.5e-12 76.3 126 33.3
PGSC0003DMG401011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 1.9e-12 75.9 126 35.7
CAN.G492.69 Capsicum annuum HOM05D005971 ORTHO05D007459 2.5e-12 75.5 126 35.7
Solyc10g005600.4 Solanum lycopersicum HOM05D005971 ORTHO05D007459 2.5e-12 75.5 126 35.7
Sopen10g001570 Solanum pennellii HOM05D005971 ORTHO05D007459 3.3e-12 75.1 126 34.9
Atru.chr12.2184 Acer truncatum HOM05D005971 ORTHO05D007459 1.6e-11 72.8 126 36.5
Nitab4.5_0000611g0060 Nicotiana tabacum HOM05D005971 ORTHO05D007459 1.6e-11 72.8 126 33.3
Sed0013026 Sechium edule HOM05D005971 ORTHO05D007459 1.6e-11 72.8 126 37.3
Cpa.g.sc10.37 Carica papaya HOM05D005971 ORTHO05D007459 2.8e-11 72.0 126 37.3
Peaxi162Scf00095g00013 Petunia axillaris HOM05D005971 ORTHO05D007459 2.8e-11 72.0 126 34.1
Gohir.A13G153099 Gossypium hirsutum HOM05D005971 ORTHO05D007459 3.6e-11 71.6 126 35.7
Nitab4.5_0004488g0030 Nicotiana tabacum HOM05D005971 ORTHO05D007459 4.7e-11 71.2 126 34.9
Potri.001G457550 Populus trichocarpa HOM05D005971 ORTHO05D007459 4.7e-11 71.2 126 35.7
MELO3C010564.2 Cucumis melo HOM05D005971 ORTHO05D007459 6.2e-11 70.9 126 34.9
Oeu052011.1 Olea europaea HOM05D005971 ORTHO05D007459 6.2e-11 70.9 102 38.2
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 1.1e-10 70.1 126 35.7
Sabra16G0310100 Salix brachista HOM05D005971 ORTHO05D007459 1.8e-10 69.3 126 34.9
AL1G14000 Arabidopsis lyrata HOM05D005971 ORTHO05D007459 2.4e-10 68.9 124 32.3
AUR62038398 Chenopodium quinoa HOM05D005971 ORTHO05D007459 2.4e-10 68.9 113 34.5
Lj1C905G3 Lonicera japonica HOM05D005971 ORTHO05D007459 2.4e-10 68.9 124 33.9
Manes.14G015836 Manihot esculenta HOM05D005971 ORTHO05D007459 2.4e-10 68.9 110 37.3
Aa31LG1G20480 Aethionema arabicum HOM05D005971 ORTHO05D007459 4.0e-10 68.2 122 29.5
vmacro09786 Vaccinium macrocarpon HOM05D005971 ORTHO05D007459 8.9e-10 67.0 126 33.3
Migut.M01561 Erythranthe guttata HOM05D005971 ORTHO05D007459 1.5e-09 66.2 126 34.1
Ah.06g185720 Amaranthus hybridus HOM05D005971 ORTHO05D007459 2.0e-09 65.9 126 31.0
PSO675G3107 Papaver somniferum HOM05D005971 ORTHO05D007459 2.0e-09 65.9 126 33.3
SalBow8G3201 Salvia bowleyana HOM05D005971 ORTHO05D007459 2.0e-09 65.9 123 34.1
C05p02580 Brassica napus HOM05D005971 ORTHO05D007459 2.6e-09 65.5 126 30.2
BolC5t29039H Brassica oleracea HOM05D005971 ORTHO05D007459 2.6e-09 65.5 126 30.2
TWI39G0032 Tripterygium wilfordii HOM05D005971 ORTHO05D007459 3.4e-09 65.1 126 32.5
AT1G04390 Arabidopsis thaliana HOM05D005971 ORTHO05D007459 5.8e-09 64.3 124 30.6
BraA10t42550Z Brassica rapa HOM05D005971 ORTHO05D007459 7.6e-09 63.9 126 29.4
THA.LOC104822751 Tarenaya hassleriana HOM05D005971 ORTHO05D007459 9.9e-09 63.5 124 33.9
Thhalv10006788m.g Eutrema salsugineum HOM05D005971 ORTHO05D007459 1.3e-08 63.2 124 29.0
SGA_v2.0_scaffold7G03577 Striga asiatica HOM05D005971 ORTHO05D007459 1.7e-08 62.8 126 34.9
A10p02830 Brassica napus HOM05D005971 ORTHO05D007459 2.2e-08 62.4 126 28.6
PSO017G5934 Papaver somniferum HOM05D005971 ORTHO05D007459 2.2e-08 62.4 126 32.5
EL10Ac2g03354 Beta vulgaris HOM05D005971 ORTHO05D007459 2.9e-08 62.0 124 30.6
CDE12G0091 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 4.9e-08 61.2 122 33.6
FAN25G3291 Fragaria x ananassa HOM05D005971 ORTHO05D007459 8.4e-08 60.5 100 36.0
PGR031G0315 Punica granatum HOM05D005971 ORTHO05D007459 1.9e-07 59.3 126 29.4
GSVIVG01020426001 Vitis vinifera HOM05D005971 ORTHO05D007459 3.2e-07 58.5 103 35.0
Carub.0001s0356 Capsella rubella HOM05D005971 ORTHO05D007459 2.1e-06 55.8 124 27.4
Atru.chr12.2180 Acer truncatum HOM05D005971 ORTHO05D007459 2.7e-06 55.5 68 44.1
MBI02_g40085_MAGBIO Magnolia biondii HOM05D005971 ORTHO05D007459 6.0e-06 54.3 92 37.0


User provided reference genes

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