Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G051300 Glycine max HOM05D009013 ORTHO05D009761 1.7e-30 135.2 62 100.0
Glyma.09G085700 Glycine max HOM05D009013 ORTHO05D009761 1.7e-22 108.6 53 94.3
Glyma.15G195700 Glycine max HOM05D009013 ORTHO05D009761 6.6e-22 106.7 53 92.5
Phvul.009G214600 Phaseolus vulgaris HOM05D009013 ORTHO05D009761 3.6e-20 100.9 53 84.9
VMungo1309G2255 Vigna mungo HOM05D009013 ORTHO05D009761 4.0e-19 97.4 53 81.1
Lj6g0000102 Lotus japonicus HOM05D009013 ORTHO05D009761 2.6e-18 94.7 54 77.8
Lalb_Chr07g0186121 Lupinus albus HOM05D009013 ORTHO05D009761 1.0e-14 82.8 51 70.6
Lalb_Chr12g0204801 Lupinus albus HOM05D009013 ORTHO05D009761 3.0e-14 81.3 52 69.2
Hma1.2p1_0015F.1_g010420 Hydrangea macrophylla HOM05D009013 ORTHO05D009761 1.1e-13 79.3 52 67.3
Lj4g0005206 Lotus japonicus HOM05D009013 ORTHO05D009761 1.1e-13 79.3 69 55.1
Lalb_Chr08g0233301 Lupinus albus HOM05D009013 ORTHO05D009761 1.9e-13 78.6 62 59.7
Psat1g020440 Pisum sativum HOM05D009013 ORTHO05D009761 1.9e-13 78.6 52 69.2
TPR.G22001 Trifolium pratense HOM05D009013 ORTHO05D009761 3.3e-13 77.8 52 71.2
Psat1g018200 Pisum sativum HOM05D009013 ORTHO05D009761 5.6e-13 77.0 50 68.0
Lalb_Chr13g0295461 Lupinus albus HOM05D009013 ORTHO05D009761 7.3e-13 76.6 48 68.8
Lalb_Chr23g0275971 Lupinus albus HOM05D009013 ORTHO05D009761 9.5e-13 76.3 47 68.1
arahy.Tifrunner.gnm1.ann1.3YWF5K Arachis hypogaea HOM05D009013 ORTHO05D009761 2.1e-12 75.1 53 64.2
arahy.Tifrunner.gnm1.ann1.5V604V Arachis hypogaea HOM05D009013 ORTHO05D009761 2.1e-12 75.1 53 64.2
Glyma.08G121600 Glycine max HOM05D009013 ORTHO05D009761 2.8e-12 74.7 50 66.0
DCAR_007913 Daucus carota HOM05D009013 ORTHO05D009761 6.2e-12 73.6 48 62.5
Haze_05479 Corylus avellana HOM05D009013 ORTHO05D009761 8.1e-12 73.2 66 57.6
TPR.G31355 Trifolium pratense HOM05D009013 ORTHO05D009761 1.1e-11 72.8 48 64.6
CiPaw.09G129900 Carya illinoinensis HOM05D009013 ORTHO05D009761 1.4e-11 72.4 62 53.2
Dinv03635 Davidia involucrata HOM05D009013 ORTHO05D009761 1.4e-11 72.4 48 68.8
Glyma.05G164200 Glycine max HOM05D009013 ORTHO05D009761 1.4e-11 72.4 50 66.0
VMungo0251G0903 Vigna mungo HOM05D009013 ORTHO05D009761 1.4e-11 72.4 50 68.0
CSS0047309 Camellia sinensis var. sinensis HOM05D014645 ORTHO05D009761 1.8e-11 72.0 55 58.2
Cfa001036 Carpinus fangiana HOM05D009013 ORTHO05D009761 1.8e-11 72.0 45 71.1
Phvul.002G244200 Phaseolus vulgaris HOM05D009013 ORTHO05D009761 6.8e-11 70.1 50 64.0
Ciclev10017480m.g Citrus clementina HOM05D009852 ORTHO05D009761 1.2e-10 69.3 52 55.8
COL.COLO4_22804 Corchorus olitorius HOM05D009852 ORTHO05D009761 1.2e-10 69.3 51 64.7
MD10G1268000 Malus domestica HOM05D014736 ORTHO05D009761 1.2e-10 69.3 47 59.6
TWI73G0525 Tripterygium wilfordii HOM05D009852 ORTHO05D009761 2.0e-10 68.6 52 55.8
BcaC02g11497 Brassica carinata HOM05D008719 ORTHO05D010898 2.6e-10 68.2 53 58.5
CANSAT35G0309 Cannabis sativa HOM05D009013 ORTHO05D009761 2.6e-10 68.2 46 63.0
FvH4_3g06440 Fragaria vesca HOM05D014736 ORTHO05D009761 4.4e-10 67.4 47 61.7
FAN11G2258 Fragaria x ananassa HOM05D014736 ORTHO05D009761 4.4e-10 67.4 47 61.7
FAN25G1841 Fragaria x ananassa HOM05D014736 ORTHO05D009761 4.4e-10 67.4 47 61.7
Medtr2g049330 Medicago truncatula HOM05D009013 ORTHO05D009761 4.4e-10 67.4 53 64.2
QL05p060720 Quercus lobata HOM05D009013 ORTHO05D009761 7.5e-10 66.6 46 60.9
Rhsim02G0193600 Rhododendron simsii HOM05D014645 ORTHO05D009761 7.5e-10 66.6 48 68.8
Thhalv10017155m.g Eutrema salsugineum HOM05D008719 ORTHO05D010898 1.3e-09 65.9 54 57.4
Prupe.4G073200 Prunus persica HOM05D014736 ORTHO05D009761 1.3e-09 65.9 47 59.6
Thecc.06G158200 Theobroma cacao HOM05D009852 ORTHO05D009761 1.3e-09 65.9 52 55.8
Actinidia07666 Actinidia chinensis HOM05D014645 ORTHO05D009761 1.7e-09 65.5 54 55.6
arahy.Tifrunner.gnm1.ann1.KKL43J Arachis hypogaea HOM05D051477 ORTHO05D009761 1.7e-09 65.5 46 63.0
arahy.Tifrunner.gnm1.ann1.KTB3LS Arachis hypogaea HOM05D051477 ORTHO05D009761 1.7e-09 65.5 46 63.0
BcaB02g09560 Brassica carinata HOM05D008719 ORTHO05D010898 1.7e-09 65.5 44 68.2
AT1G29530 Arabidopsis thaliana HOM05D008719 ORTHO05D010898 3.7e-09 64.3 54 50.0
Medtr6g068870 Medicago truncatula HOM05D009013 ORTHO05D009761 3.7e-09 64.3 59 50.8
Potri.011G077700 Populus trichocarpa HOM05D009852 ORTHO05D009761 4.9e-09 63.9 54 53.7
Aa31LG6G6070 Aethionema arabicum HOM05D008719 ORTHO05D010898 6.4e-09 63.5 47 61.7
MD05G1292200 Malus domestica HOM05D014736 ORTHO05D009761 8.3e-09 63.2 44 56.8
Ca_25278_v3 Cicer arietinum L. HOM05D009013 ORTHO05D009761 1.1e-08 62.8 50 56.0
RcHm_v2.0_Chr5g0012861 Rosa chinensis HOM05D014736 ORTHO05D009761 1.1e-08 62.8 55 56.4
Eucgr.D00345 Eucalyptus grandis HOM05D014736 ORTHO05D009761 1.4e-08 62.4 46 58.7
AL4G30240 Arabidopsis lyrata HOM05D008719 ORTHO05D010898 1.9e-08 62.0 52 55.8
C04p14710 Brassica napus HOM05D008719 ORTHO05D010898 1.9e-08 62.0 53 56.6
Duzib160G0535 Durio zibethinus HOM05D009852 ORTHO05D009761 1.9e-08 62.0 52 59.6
Gohir.D10G032500 Gossypium hirsutum HOM05D009852 ORTHO05D009761 2.4e-08 61.6 52 55.8
Gorai.011G034400 Gossypium raimondii HOM05D009852 ORTHO05D009761 2.4e-08 61.6 52 55.8
Carub.0004s1595 Capsella rubella HOM05D008719 ORTHO05D010898 3.2e-08 61.2 43 65.1
Gohir.D05G154000 Gossypium hirsutum HOM05D009852 ORTHO05D009761 3.2e-08 61.2 52 55.8
Gorai.009G158300 Gossypium raimondii HOM05D009852 ORTHO05D009761 3.2e-08 61.2 52 55.8
Aqoxy4G00149 Aquilegia oxysepala HOM05D022831 ORTHO05D023597 4.1e-08 60.8 54 57.4
Cc00_g03210 Coffea canephora HOM05D012094 ORTHO05D009761 4.1e-08 60.8 48 56.2
Gohir.A10G031700 Gossypium hirsutum HOM05D009852 ORTHO05D009761 4.1e-08 60.8 52 55.8
Ah.09g232960 Amaranthus hybridus HOM05D018558 ORTHO05D018254 5.4e-08 60.5 53 54.7
Atru.chr10.1414 Acer truncatum HOM05D009852 ORTHO05D009761 7.1e-08 60.1 54 51.9
AT2G34310 Arabidopsis thaliana HOM05D008719 ORTHO05D010898 9.2e-08 59.7 63 49.2
Actinidia39545 Actinidia chinensis HOM05D014645 ORTHO05D009761 1.2e-07 59.3 56 48.2
CARHR128380 Cardamine hirsuta HOM05D008719 ORTHO05D010898 1.2e-07 59.3 57 52.6
Actinidia27190 Actinidia chinensis HOM05D014645 ORTHO05D009761 1.6e-07 58.9 44 54.5
FAN21G2246 Fragaria x ananassa HOM05D014736 ORTHO05D009761 1.6e-07 58.9 41 61.0
BolC4t27834H Brassica oleracea HOM05D008719 ORTHO05D010898 2.1e-07 58.5 47 59.6
Carub.0001s2776 Capsella rubella HOM05D008719 ORTHO05D010898 2.1e-07 58.5 54 48.1
DCAR_003953 Daucus carota HOM05D009013 ORTHO05D009761 2.1e-07 58.5 47 51.1
Manes.17G064400 Manihot esculenta HOM05D009852 ORTHO05D009761 2.1e-07 58.5 47 53.2
TWI09G0214 Tripterygium wilfordii HOM05D009852 ORTHO05D009761 2.1e-07 58.5 52 48.1
TWI09G1113 Tripterygium wilfordii HOM05D009852 ORTHO05D009761 2.1e-07 58.5 52 48.1
Actinidia19483 Actinidia chinensis HOM05D014645 ORTHO05D009761 2.7e-07 58.2 44 59.1
A04p26270 Brassica napus HOM05D008719 ORTHO05D010898 2.7e-07 58.2 47 59.6
BraA04t18131Z Brassica rapa HOM05D008719 ORTHO05D010898 2.7e-07 58.2 47 59.6
CSS0045433 Camellia sinensis var. sinensis HOM05D014645 ORTHO05D009761 3.5e-07 57.8 52 51.9
Gohir.A05G151600 Gossypium hirsutum HOM05D009852 ORTHO05D009761 3.5e-07 57.8 52 53.8
THA.LOC104814270 Tarenaya hassleriana HOM05D008719 ORTHO05D010898 3.5e-07 57.8 47 57.4
EL10Ac8g19799 Beta vulgaris HOM05D018558 ORTHO05D018254 6.0e-07 57.0 42 54.8
Nitab4.5_0000206g0120 Nicotiana tabacum HOM05D012094 ORTHO05D011876 6.0e-07 57.0 48 54.2
Sp4g16580 Schrenkiella parvula HOM05D008719 ORTHO05D010898 6.0e-07 57.0 52 50.0
BcaB06g28746 Brassica carinata HOM05D008719 ORTHO05D010898 7.8e-07 56.6 67 44.8
CiPaw.10G096600 Carya illinoinensis HOM05D009013 ORTHO05D009761 1.0e-06 56.2 38 60.5
Sed0006555 Sechium edule HOM05D022667 ORTHO05D009761 1.0e-06 56.2 35 65.7
Duzib192G0106 Durio zibethinus HOM05D009852 ORTHO05D009761 1.3e-06 55.8 52 53.8
Gorai.010G164100 Gossypium raimondii HOM05D009852 ORTHO05D009761 1.3e-06 55.8 32 71.9
Manes.15G116600 Manihot esculenta HOM05D009852 ORTHO05D009761 1.3e-06 55.8 52 46.2
PSO675G7770 Papaver somniferum HOM05D022831 ORTHO05D023597 1.3e-06 55.8 48 50.0
THA.LOC104820622 Tarenaya hassleriana HOM05D008719 ORTHO05D010898 1.3e-06 55.8 44 56.8
Potri.001G354600 Populus trichocarpa HOM05D009852 ORTHO05D009761 1.7e-06 55.5 51 47.1
C04p63660 Brassica napus HOM05D008719 ORTHO05D010898 2.3e-06 55.1 47 57.4
CsaV3_6G051330 Cucumis sativus L. HOM05D022667 ORTHO05D009761 2.3e-06 55.1 45 51.1
Duzib235G1088 Durio zibethinus HOM05D009852 ORTHO05D009761 2.3e-06 55.1 55 50.9
Nitab4.5_0001826g0030 Nicotiana tabacum HOM05D012094 ORTHO05D011876 2.3e-06 55.1 50 48.0
Sed0023686 Sechium edule HOM05D022667 ORTHO05D009761 2.3e-06 55.1 42 57.1
HanXRQChr16g0526061 Helianthus annuus HOM05D038653 ORTHO05D020580 3.9e-06 54.3 45 48.9
AL1G43370 Arabidopsis lyrata HOM05D008719 ORTHO05D010898 5.1e-06 53.9 52 48.1
PSO541G1916 Papaver somniferum HOM05D022831 ORTHO05D023597 5.1e-06 53.9 43 53.5
ECA236G3144 Erigeron canadensis HOM05D025910 ORTHO05D020580 8.6e-06 53.1 48 54.2
Gohir.D06G140600 Gossypium hirsutum HOM05D009852 ORTHO05D009761 8.6e-06 53.1 32 68.8


User provided reference genes

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