Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 7.9e-26 119.8 65 100.0
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 1.1e-24 115.9 65 96.9
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.5e-21 105.5 65 89.2
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 3.5e-18 94.4 65 78.5
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 3.5e-18 94.4 65 78.5
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 4.6e-18 94.0 65 84.6
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 3.0e-17 91.3 65 80.0
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 3.9e-17 90.9 65 76.9
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 5.1e-17 90.5 62 83.9
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 5.1e-17 90.5 65 81.5
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 8.7e-17 89.7 65 80.0
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 8.7e-17 89.7 65 75.4
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.1e-16 89.4 65 76.9
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 1.5e-16 89.0 64 79.7
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.9e-16 88.6 65 80.0
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 2.5e-16 88.2 65 76.9
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 2.5e-16 88.2 65 76.9
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 5.7e-16 87.0 65 76.9
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 1.3e-15 85.9 65 78.5
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.1e-15 85.1 68 73.5
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 2.1e-15 85.1 66 71.2
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 4.8e-15 84.0 65 72.3
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 6.3e-15 83.6 68 72.1
Atru.chr8.777 Acer truncatum HOM05D001568 ORTHO05D004404 8.2e-15 83.2 66 71.2
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 8.2e-15 83.2 67 73.1
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 8.2e-15 83.2 65 73.8
Oeu032864.1 Olea europaea HOM05D001568 ORTHO05D004404 1.1e-14 82.8 65 73.8
Potri.004G105900 Populus trichocarpa HOM05D001568 ORTHO05D004404 3.1e-14 81.3 65 70.8
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 4.1e-14 80.9 74 60.8
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 4.1e-14 80.9 74 60.8
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 4.1e-14 80.9 66 75.8
Gohir.A07G073000 Gossypium hirsutum HOM05D001568 ORTHO05D004404 6.9e-14 80.1 74 60.8
Nn4g23635 Nelumbo nucifera HOM05D001568 ORTHO05D004404 6.9e-14 80.1 65 70.8
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 2.0e-13 78.6 67 70.1
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 2.0e-13 78.6 65 69.2
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 2.0e-13 78.6 58 75.9
arahy.Tifrunner.gnm1.ann1.IG7GQE Arachis hypogaea HOM05D001568 ORTHO05D004404 2.6e-13 78.2 75 66.7
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 2.6e-13 78.2 63 73.0
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 4.5e-13 77.4 66 66.7
DCAR_010979 Daucus carota HOM05D001568 ORTHO05D004404 4.5e-13 77.4 71 69.0
DCAR_010982 Daucus carota HOM05D001568 ORTHO05D004404 4.5e-13 77.4 71 69.0
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 4.5e-13 77.4 60 73.3
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 4.5e-13 77.4 66 66.7
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 4.5e-13 77.4 66 66.7
arahy.Tifrunner.gnm1.ann1.R2NHXZ Arachis hypogaea HOM05D001568 ORTHO05D004404 5.9e-13 77.0 75 65.3
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 5.9e-13 77.0 55 80.0
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 5.9e-13 77.0 64 67.2
AUR62008943 Chenopodium quinoa HOM05D001568 ORTHO05D004404 7.6e-13 76.6 66 68.2
ECA246G2394 Erigeron canadensis HOM05D001568 ORTHO05D004404 1.3e-12 75.9 75 64.0
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 2.9e-12 74.7 64 64.1
HanXRQChr10g0283701 Helianthus annuus HOM05D001568 ORTHO05D004404 2.9e-12 74.7 74 60.8
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 3.8e-12 74.3 66 62.1
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 3.8e-12 74.3 66 62.1
Lsat_1_v5_gn_3_94821 Lactuca sativa HOM05D001568 ORTHO05D004404 6.5e-12 73.6 70 64.3
Lsat_1_v5_gn_4_175441 Lactuca sativa HOM05D001568 ORTHO05D004404 6.5e-12 73.6 64 70.3
THA.LOC104822692 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 6.5e-12 73.6 66 60.6
PGSC0003DMG400019661 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.1e-11 72.8 67 64.2
Sed0014020 Sechium edule HOM05D001568 ORTHO05D004404 1.4e-11 72.4 65 67.7
Sed0003724 Sechium edule HOM05D001568 ORTHO05D004404 9.3e-11 69.7 67 59.7
Cc07_g04900 Coffea canephora HOM05D001568 ORTHO05D004404 6.1e-10 67.0 65 61.5
CiPaw.03G006700 Carya illinoinensis HOM05D001568 ORTHO05D004404 7.9e-10 66.6 58 70.7
Ah.10g037380 Amaranthus hybridus HOM05D001568 ORTHO05D004404 3.9e-09 64.3 66 59.1
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 8.7e-09 63.2 61 55.7
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 1.1e-08 62.8 55 63.6
Thhalv10019331m.g Eutrema salsugineum HOM05D001568 ORTHO05D004404 1.9e-08 62.0 81 46.9
Potri.004G105800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.9e-08 62.0 40 70.0
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 2.5e-08 61.6 61 55.7
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 2.5e-08 61.6 61 55.7
Carub.0002s1347 Capsella rubella HOM05D001568 ORTHO05D004404 3.3e-08 61.2 85 44.7
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 4.3e-08 60.8 61 57.4
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 7.4e-08 60.1 61 52.5
AL2G25700 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 7.4e-08 60.1 81 45.7
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 7.4e-08 60.1 55 60.0
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 7.4e-08 60.1 55 61.8
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 9.7e-08 59.7 61 55.7
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 9.7e-08 59.7 55 61.8
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 9.7e-08 59.7 61 55.7
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 9.7e-08 59.7 55 61.8
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 9.7e-08 59.7 55 56.4
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 1.3e-07 59.3 61 55.7
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 1.3e-07 59.3 59 57.6
Sp5g22130 Schrenkiella parvula HOM05D001568 ORTHO05D004404 1.3e-07 59.3 81 44.4
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 1.3e-07 59.3 58 60.3
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 1.6e-07 58.9 61 54.1
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 1.6e-07 58.9 55 60.0
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 1.6e-07 58.9 55 60.0
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.6e-07 58.9 63 57.1
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.6e-07 58.9 63 57.1
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.6e-07 58.9 55 61.8
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 2.2e-07 58.5 61 50.8
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 2.2e-07 58.5 56 62.5
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 2.2e-07 58.5 56 62.5
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 2.8e-07 58.2 63 55.6
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 2.8e-07 58.2 55 60.0
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 3.7e-07 57.8 55 58.2
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 3.7e-07 57.8 61 49.2
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 3.7e-07 57.8 55 60.0
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 3.7e-07 57.8 55 60.0
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 3.7e-07 57.8 55 60.0
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 3.7e-07 57.8 52 61.5
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 4.8e-07 57.4 55 60.0
CARHR059650 Cardamine hirsuta HOM05D001568 ORTHO05D004404 4.8e-07 57.4 85 41.2
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 4.8e-07 57.4 57 59.6
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 6.3e-07 57.0 56 58.9
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 6.3e-07 57.0 55 56.4
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 6.3e-07 57.0 55 58.2
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 6.3e-07 57.0 55 60.0
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 6.3e-07 57.0 55 60.0
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 8.2e-07 56.6 57 57.9
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 8.2e-07 56.6 57 57.9
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 8.2e-07 56.6 61 49.2
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 8.2e-07 56.6 55 58.2
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 8.2e-07 56.6 55 56.4
A02p14040 Brassica napus HOM05D001568 ORTHO05D004404 1.1e-06 56.2 41 61.0
BraA02t06465Z Brassica rapa HOM05D001568 ORTHO05D004404 1.1e-06 56.2 41 61.0
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 1.1e-06 56.2 55 54.5
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 1.1e-06 56.2 55 54.5
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.1e-06 56.2 55 54.5
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 1.1e-06 56.2 55 58.2
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 1.1e-06 56.2 55 58.2
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 1.1e-06 56.2 55 58.2
BolC6t39129H Brassica oleracea HOM05D001568 ORTHO05D004404 1.4e-06 55.8 78 42.3
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 1.4e-06 55.8 55 54.5
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.4e-06 55.8 61 50.8
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.4e-06 55.8 55 56.4
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 1.4e-06 55.8 57 56.1
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 1.4e-06 55.8 55 54.5
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.4e-06 55.8 55 58.2
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 1.4e-06 55.8 60 58.3
A07p33830 Brassica napus HOM05D001568 ORTHO05D004404 1.8e-06 55.5 79 41.8
BraA07t31009Z Brassica rapa HOM05D001568 ORTHO05D004404 1.8e-06 55.5 79 41.8
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.8e-06 55.5 51 62.7
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 1.8e-06 55.5 56 57.1
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.8e-06 55.5 55 56.4
C06p43090 Brassica napus HOM05D001568 ORTHO05D004404 2.4e-06 55.1 80 41.2
MSTRG.23836 Avicennia marina HOM05D001568 ORTHO05D004404 3.1e-06 54.7 54 51.9
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 3.1e-06 54.7 57 56.1
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 4.1e-06 54.3 55 52.7
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 4.1e-06 54.3 59 57.6
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 4.1e-06 54.3 60 55.0
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 4.1e-06 54.3 60 55.0
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 5.3e-06 53.9 56 57.1
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 5.3e-06 53.9 57 56.1
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 5.3e-06 53.9 57 56.1
Aa31LG2G3570 Aethionema arabicum HOM05D001568 ORTHO05D004404 6.9e-06 53.5 74 47.3
A05p29940 Brassica napus HOM05D001568 ORTHO05D004404 6.9e-06 53.5 59 52.5
C02p22640 Brassica napus HOM05D001568 ORTHO05D004404 6.9e-06 53.5 41 58.5
BolC2t08417H Brassica oleracea HOM05D001568 ORTHO05D004404 6.9e-06 53.5 41 58.5
BraA05t21839Z Brassica rapa HOM05D001568 ORTHO05D004404 6.9e-06 53.5 59 52.5
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 6.9e-06 53.5 57 56.1
BcaC05g28437 Brassica carinata HOM05D001568 ORTHO05D004404 9.0e-06 53.1 59 52.5
C05p45170 Brassica napus HOM05D001568 ORTHO05D004404 9.0e-06 53.1 59 52.5
BolC5t33243H Brassica oleracea HOM05D001568 ORTHO05D004404 9.0e-06 53.1 59 52.5


User provided reference genes

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