Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 8.0e-230 800.0 397 100.0
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 2.1e-174 615.9 348 87.4
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 2.0e-172 609.4 349 84.0
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 1.0e-168 597.0 349 83.4
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 1.1e-165 587.0 350 82.0
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 2.0e-164 582.8 349 81.1
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 4.5e-164 581.6 349 82.8
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 1.6e-158 563.1 347 80.7
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 1.3e-155 553.5 348 79.3
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 1.0e-147 527.3 347 76.1
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 6.5e-147 524.6 351 74.4
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 2.5e-146 522.7 347 73.8
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 1.6e-145 520.0 347 73.2
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 2.1e-145 519.6 291 90.4
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 8.8e-144 514.2 347 73.2
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 2.0e-143 513.1 347 72.3
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 9.7e-143 510.8 349 73.9
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 8.2e-142 507.7 349 73.4
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 1.4e-141 506.9 347 70.9
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 3.1e-141 505.8 348 73.0
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 1.2e-140 503.8 347 71.8
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 5.9e-140 501.5 348 71.6
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.2e-139 499.6 342 70.8
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 2.2e-139 499.6 342 71.3
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 2.9e-139 499.2 347 70.0
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.4e-138 496.9 347 69.7
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 3.2e-138 495.7 347 71.2
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 7.2e-138 494.6 347 70.6
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.7e-137 492.7 358 68.4
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 7.9e-137 491.1 347 70.6
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.4e-136 490.3 347 69.2
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 1.8e-136 490.0 349 71.9
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 8.8e-136 487.6 349 69.6
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 2.0e-135 486.5 347 70.9
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 2.6e-135 486.1 348 69.3
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 3.3e-135 485.7 347 70.6
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 9.7e-135 484.2 347 69.2
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 2.2e-134 483.0 347 68.9
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 3.7e-134 482.3 342 70.8
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 6.3e-134 481.5 347 68.0
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 9.1e-133 477.6 351 67.5
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 9.1e-133 477.6 347 68.0
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 1.5e-132 476.9 347 67.4
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 2.6e-132 476.1 344 69.5
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 4.5e-132 475.3 348 69.0
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 5.9e-132 474.9 342 70.2
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 1.0e-131 474.2 341 69.5
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 1.3e-131 473.8 347 66.9
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.7e-131 473.4 342 69.9
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 3.8e-131 472.2 346 67.1
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 8.5e-131 471.1 344 67.7
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 8.5e-131 471.1 351 68.1
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 2.5e-130 469.5 349 69.1
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 2.5e-130 469.5 347 67.1
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 9.4e-130 467.6 347 68.3
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 1.6e-129 466.8 348 68.4
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 8.0e-129 464.5 347 67.7
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.4e-128 463.8 349 66.8
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.0e-128 462.6 347 68.0
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 3.0e-128 462.6 347 68.3
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 3.9e-128 462.2 348 67.2
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 6.7e-128 461.5 342 66.7
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 8.8e-128 461.1 347 66.6
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 8.8e-128 461.1 447 56.4
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.1e-127 460.7 349 66.5
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 1.5e-127 460.3 347 65.4
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 8.2e-126 454.5 358 63.7
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 1.1e-125 454.1 348 67.0
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 1.1e-125 454.1 349 65.6
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 1.1e-125 454.1 350 67.1
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 1.8e-125 453.4 347 65.1
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 2.4e-125 453.0 347 66.9
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 3.1e-125 452.6 347 65.1
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 5.3e-125 451.8 347 64.8
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 7.0e-125 451.4 368 63.3
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 9.1e-125 451.1 348 64.7
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 1.2e-124 450.7 347 64.8
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 2.6e-124 449.5 329 67.8
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 5.9e-124 448.4 347 65.1
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 5.9e-124 448.4 347 65.7
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 5.9e-124 448.4 342 66.7
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 5.9e-124 448.4 347 64.3
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 1.3e-123 447.2 348 66.1
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.7e-123 446.8 347 66.0
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 2.2e-123 446.4 342 65.2
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 8.5e-123 444.5 347 65.7
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 1.1e-122 444.1 348 65.8
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 1.1e-122 444.1 344 65.1
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 4.2e-122 442.2 347 64.3
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 4.2e-122 442.2 347 64.6
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 4.2e-122 442.2 346 64.7
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 9.4e-122 441.0 342 65.8
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 9.4e-122 441.0 342 63.5
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 2.1e-121 439.9 342 63.7
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 1.4e-120 437.2 359 61.6
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 1.4e-120 437.2 355 63.7
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 1.2e-119 434.1 350 62.9
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 2.6e-119 433.0 351 63.0
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 5.7e-119 431.8 347 62.0
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 5.7e-119 431.8 347 62.5
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 2.8e-118 429.5 341 60.7
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 4.8e-118 428.7 347 61.1
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 1.8e-117 426.8 349 62.2
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 3.1e-117 426.0 347 61.7
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 4.1e-117 425.6 350 61.4
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 4.1e-117 425.6 347 59.9
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 9.1e-117 424.5 351 60.4
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 2.0e-116 423.3 347 62.2
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 2.0e-116 423.3 347 61.4
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 3.5e-116 422.5 308 69.8
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 7.7e-116 421.4 342 61.4
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 1.1e-114 417.5 341 61.6
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 1.9e-114 416.8 347 63.1
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 5.5e-114 415.2 350 60.3
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 2.7e-113 412.9 347 59.9
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 2.7e-113 412.9 367 59.1
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 4.7e-113 412.1 347 57.9
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 1.4e-112 410.6 351 57.5
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.0e-112 409.5 352 61.4
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 5.2e-112 408.7 352 57.4
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 1.5e-111 407.1 363 59.0
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 2.8e-110 402.9 356 57.9
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 6.3e-110 401.7 306 67.3
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 2.7e-108 396.4 341 58.9
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 3.5e-108 396.0 295 68.1
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 5.9e-108 395.2 274 72.3
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 2.3e-107 393.3 352 58.0
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 9.5e-106 387.9 343 56.3
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 9.5e-106 387.9 346 55.5
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.6e-105 387.1 246 79.7
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 6.1e-105 385.2 299 67.2
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 9.8e-103 377.9 344 55.2
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 1.6e-100 370.5 302 63.2
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 3.5e-100 369.4 431 48.5
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.5e-98 364.0 359 55.4
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 2.6e-95 353.2 339 51.3
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 4.9e-94 349.0 336 56.2
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 3.1e-88 329.7 246 67.9
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 2.0e-87 327.0 291 58.8
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 3.2e-85 319.7 299 56.5
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 2.1e-84 317.0 342 46.2
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 2.1e-84 317.0 248 68.1
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 1.0e-83 314.7 300 57.0
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 1.7e-83 313.9 245 66.1
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.1e-82 311.2 242 67.4
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 4.3e-82 309.3 226 73.5
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 2.0e-79 300.4 343 48.4
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 9.9e-79 298.1 186 77.4
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 1.3e-78 297.7 280 55.0
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 1.1e-77 294.7 341 43.1
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 2.1e-76 290.4 350 47.4
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 9.6e-74 281.6 144 88.2
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 2.4e-72 276.9 246 58.9
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 3.4e-71 273.1 269 50.9
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 7.6e-71 271.9 269 50.9
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 9.9e-71 271.6 340 42.4
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 8.4e-70 268.5 246 57.7
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 1.9e-69 267.3 246 56.5
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 5.4e-69 265.8 339 46.0
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 5.8e-63 245.7 255 47.8
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 3.5e-60 236.5 275 48.4
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 2.9e-54 216.9 129 77.5
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.6e-50 202.6 140 70.0
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 1.3e-43 181.4 105 79.0
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.3e-42 176.4 128 71.9
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.9e-40 169.1 125 70.4
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 1.8e-35 154.5 134 59.0
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 7.4e-34 149.1 128 64.1
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 4.5e-23 113.2 74 68.9
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 1.0e-22 112.1 347 25.4
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 1.0e-19 102.1 149 33.6
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.2e-17 94.4 57 71.9
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 7.0e-16 89.4 54 61.1
PRCOL_00004263 Prasinoderma coloniale HOM05D068002 ORTHO05D004501 1.1e-13 82.0 295 24.4
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 3.2e-13 80.5 140 37.9
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 2.4e-08 64.3 45 64.4
HanXRQChr02g0053871 Helianthus annuus HOM05D004071 ORTHO05D004501 7.7e-07 59.3 101 37.6
CBR_g42155 Chara braunii HOM05D004071 ORTHO05D004501 2.2e-06 57.8 142 29.6
Haze_14102 Corylus avellana HOM05D004071 ORTHO05D004501 8.5e-06 55.8 84 48.8


User provided reference genes

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