Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 2.2e-174 615.5 316 100.0
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 1.8e-155 552.7 323 91.3
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 3.4e-138 495.4 309 85.1
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 1.3e-129 466.8 317 78.9
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 6.2e-108 394.8 314 71.3
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 2.6e-106 389.4 312 70.5
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 1.4e-104 383.6 321 67.9
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 1.1e-101 374.0 323 66.9
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 2.3e-99 366.3 314 66.9
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 2.9e-97 359.4 305 66.6
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 3.7e-97 359.0 282 68.8
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 2.4e-96 356.3 315 67.3
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 7.1e-96 354.8 320 65.0
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 7.1e-96 354.8 320 65.0
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 2.3e-94 349.7 314 64.0
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 1.1e-91 340.9 309 65.0
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 1.5e-90 337.0 322 63.7
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 3.8e-89 332.4 265 71.7
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 8.4e-89 331.3 320 60.3
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 1.4e-88 330.5 323 63.5
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 3.2e-88 329.3 302 64.6
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 5.4e-88 328.6 324 62.3
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 1.1e-85 320.9 275 68.4
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 3.3e-85 319.3 323 61.9
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 2.8e-84 316.2 322 59.0
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 4.0e-83 312.4 311 62.4
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 9.0e-83 311.2 251 71.3
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 7.6e-82 308.1 319 59.9
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 2.9e-81 306.2 313 59.4
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 3.2e-80 302.8 313 57.5
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 1.7e-78 297.0 250 69.2
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 3.0e-78 296.2 329 58.4
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 6.6e-78 295.0 320 57.8
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 6.6e-78 295.0 310 58.1
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.1e-77 294.3 312 56.1
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 1.1e-77 294.3 324 58.0
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.9e-77 293.5 312 56.4
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 1.9e-77 293.5 320 57.5
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 4.3e-77 292.4 338 56.8
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 1.3e-76 290.8 312 55.4
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 1.3e-76 290.8 319 55.2
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 2.8e-76 289.7 251 64.5
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 4.8e-76 288.9 306 56.9
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 1.8e-75 287.0 318 55.3
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 4.0e-75 285.8 316 57.9
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 6.9e-75 285.0 319 58.3
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 1.2e-74 284.3 247 66.0
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 2.0e-74 283.5 314 54.8
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 1.9e-72 276.9 345 53.9
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 2.4e-72 276.6 311 55.9
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 2.4e-72 276.6 308 54.9
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 1.2e-71 274.2 314 52.9
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 2.1e-71 273.5 314 52.9
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 2.1e-71 273.5 312 54.8
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 6.0e-71 271.9 249 65.9
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 1.0e-70 271.2 308 52.6
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 1.3e-70 270.8 294 57.5
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 3.9e-70 269.2 268 61.6
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 5.1e-70 268.9 323 52.0
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 8.7e-70 268.1 296 55.1
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 5.6e-69 265.4 319 51.1
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 7.4e-69 265.0 228 66.2
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 9.6e-69 264.6 323 52.9
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 9.6e-69 264.6 323 50.2
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 4.8e-68 262.3 323 52.9
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 4.8e-68 262.3 309 53.4
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 6.2e-68 261.9 309 53.7
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 8.1e-68 261.5 309 53.7
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 8.1e-68 261.5 312 54.2
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 8.1e-68 261.5 322 50.9
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 2.4e-67 260.0 305 53.8
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 3.1e-67 259.6 304 56.6
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 3.1e-67 259.6 327 50.8
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.5e-66 257.3 335 49.0
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 2.0e-66 256.9 338 46.7
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 3.4e-66 256.1 224 65.6
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 4.5e-66 255.8 268 59.0
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 1.0e-65 254.6 245 59.2
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.9e-65 253.1 311 55.6
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 2.9e-65 253.1 312 55.4
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.9e-64 250.4 313 51.1
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 2.5e-64 250.0 231 62.8
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 5.5e-64 248.8 298 53.0
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 2.7e-63 246.5 324 51.9
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 1.0e-62 244.6 251 59.4
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 1.5e-61 240.7 335 47.5
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 3.7e-60 236.1 300 49.0
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 1.8e-59 233.8 311 50.2
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 1.5e-58 230.7 272 59.2
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.0e-57 228.0 179 70.4
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 2.2e-57 226.9 345 46.7
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.9e-57 226.5 338 47.3
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 2.5e-56 223.4 287 52.3
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 3.2e-56 223.0 293 49.8
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 3.5e-55 219.5 301 49.5
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 1.8e-54 217.2 162 70.4
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 3.9e-54 216.1 258 53.9
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 6.7e-54 215.3 234 60.7
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 1.1e-53 214.5 296 50.3
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.5e-53 213.4 204 63.7
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 3.7e-52 209.5 324 46.6
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 6.3e-52 208.8 318 44.3
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 2.4e-51 206.8 286 48.3
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 5.9e-50 202.2 296 49.7
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 5.9e-50 202.2 311 44.7
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 1.7e-49 200.7 311 44.4
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 8.5e-49 198.4 324 42.9
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 1.9e-48 197.2 305 45.6
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 5.5e-48 195.7 325 43.1
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 9.4e-48 194.9 332 42.2
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 1.6e-47 194.1 312 43.9
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 3.6e-47 193.0 248 50.8
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 4.6e-47 192.6 222 52.7
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 4.6e-47 192.6 330 44.5
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 4.6e-47 192.6 262 50.4
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 4.6e-47 192.6 325 42.5
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 4.6e-47 192.6 262 50.4
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 6.1e-47 192.2 238 52.9
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 1.0e-46 191.4 233 54.5
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 1.0e-46 191.4 252 50.0
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 3.0e-46 189.9 332 41.6
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 3.9e-46 189.5 345 42.0
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 5.1e-46 189.1 243 51.4
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 5.1e-46 189.1 330 43.3
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 2.0e-45 187.2 345 41.7
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 9.7e-45 184.9 228 52.6
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 2.8e-44 183.3 252 50.8
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 3.7e-44 183.0 315 42.5
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 3.7e-44 183.0 295 42.4
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 3.7e-44 183.0 310 42.6
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 6.3e-44 182.2 255 48.6
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 8.2e-44 181.8 209 52.6
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 2.4e-43 180.3 220 53.2
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 5.3e-43 179.1 196 55.6
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 1.5e-42 177.6 288 44.4
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 1.3e-41 174.5 222 51.8
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 1.7e-41 174.1 251 47.0
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 1.7e-41 174.1 251 47.0
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 2.2e-41 173.7 320 41.9
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 5.0e-41 172.6 285 43.9
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.9e-40 170.6 301 42.9
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 3.2e-40 169.9 236 47.9
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 3.2e-40 169.9 223 51.6
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 3.0e-38 163.3 295 40.3
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 5.7e-37 159.1 157 56.1
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 1.3e-36 157.9 240 45.0
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 4.8e-36 156.0 241 44.4
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 1.8e-35 154.1 166 57.8
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 2.6e-34 150.2 110 71.8
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 3.5e-34 149.8 115 69.6
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 8.5e-33 145.2 308 37.7
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 1.1e-32 144.8 308 37.7
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 2.5e-32 143.7 309 37.9
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 5.5e-32 142.5 309 37.5
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 3.0e-30 136.7 282 38.7
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 5.2e-30 136.0 273 39.6
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 9.7e-29 131.7 306 36.9
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 8.5e-25 118.6 178 47.8
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 1.2e-23 114.8 169 47.3
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 4.1e-19 99.8 240 35.0
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 2.5e-16 90.5 63 77.8
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 5.5e-16 89.4 89 53.9


User provided reference genes

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