Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G042400 Glycine max HOM05D007310 ORTHO05D002375 3.4e-102 375.2 212 100.0
Glyma.08G070200 Glycine max HOM05D007310 ORTHO05D002375 1.5e-78 296.6 233 78.5
VMungo0251G1327 Vigna mungo HOM05D007310 ORTHO05D002375 1.0e-66 257.3 247 66.8
Phvul.002G211100 Phaseolus vulgaris HOM05D007310 ORTHO05D002375 6.2e-64 248.1 217 72.8
TPR.G2868 Trifolium pratense HOM05D007310 ORTHO05D002375 1.8e-58 229.9 212 66.5
Lj4g0014623 Lotus japonicus HOM05D007310 ORTHO05D002375 1.9e-57 226.5 214 67.8
Lalb_Chr09g0326871 Lupinus albus HOM05D007310 ORTHO05D002375 1.1e-55 220.7 213 56.8
arahy.Tifrunner.gnm1.ann1.U7VQVC Arachis hypogaea HOM05D007310 ORTHO05D002375 1.3e-53 213.8 215 64.7
arahy.Tifrunner.gnm1.ann1.KVX74B Arachis hypogaea HOM05D007310 ORTHO05D002375 1.7e-53 213.4 215 64.7
Ca_18369_v3 Cicer arietinum L. HOM05D007310 ORTHO05D002375 2.2e-53 213.0 214 64.5
Medtr4g093820 Medicago truncatula HOM05D007310 ORTHO05D002375 2.5e-52 209.5 213 61.5
Psat7g100440 Pisum sativum HOM05D007310 ORTHO05D002375 3.4e-46 189.1 213 57.3
Potri.001G310100 Populus trichocarpa HOM05D007310 ORTHO05D002375 1.3e-32 144.1 206 45.6
Ciclev10030152m.g Citrus clementina HOM05D007310 ORTHO05D002375 2.2e-32 143.3 186 53.8
QL11p023211 Quercus lobata HOM05D007310 ORTHO05D002375 2.0e-30 136.7 214 47.2
Prupe.8G066300 Prunus persica HOM05D007310 ORTHO05D002375 2.9e-29 132.9 207 45.9
CiPaw.05G032100 Carya illinoinensis HOM05D007310 ORTHO05D002375 1.5e-28 130.6 217 46.1
Dinv24166 Davidia involucrata HOM05D007310 ORTHO05D002375 2.5e-28 129.8 213 45.5
Cfa005685 Carpinus fangiana HOM05D007310 ORTHO05D002375 4.2e-28 129.0 221 43.9
Thecc.02G133200 Theobroma cacao HOM05D007310 ORTHO05D002375 1.2e-27 127.5 191 50.3
Manes.07G038100 Manihot esculenta HOM05D007310 ORTHO05D002375 5.2e-26 122.1 151 55.6
Manes.07G035800 Manihot esculenta HOM05D007310 ORTHO05D002375 1.2e-25 120.9 153 54.2
Rhsim05G0103200 Rhododendron simsii HOM05D007310 ORTHO05D002375 3.4e-25 119.4 166 50.6
Haze_10565 Corylus avellana HOM05D007310 ORTHO05D002375 4.4e-25 119.0 220 43.6
FvH4_2g13500 Fragaria vesca HOM05D007310 ORTHO05D002375 7.5e-25 118.2 161 41.0
FAN24G3359 Fragaria x ananassa HOM05D007310 ORTHO05D004145 7.5e-25 118.2 161 41.0
CSS0047922 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 9.8e-25 117.9 140 60.0
RcHm_v2.0_Chr7g0236611 Rosa chinensis HOM05D007310 ORTHO05D002375 2.8e-24 116.3 219 42.5
FAN15G0442 Fragaria x ananassa HOM05D007310 ORTHO05D002375 3.7e-24 115.9 213 44.1
PGR142G1548 Punica granatum HOM05D007310 ORTHO05D002375 3.7e-24 115.9 233 41.2
Duzib248G0762 Durio zibethinus HOM05D007310 ORTHO05D002375 2.4e-23 113.2 164 51.8
FAN27G1440 Fragaria x ananassa HOM05D007310 ORTHO05D002375 3.1e-23 112.8 161 42.2
CiPaw.06G156100 Carya illinoinensis HOM05D007310 ORTHO05D002375 4.1e-23 112.5 123 64.2
Nitab4.5_0006625g0010 Nicotiana tabacum HOM05D007310 ORTHO05D002375 5.4e-23 112.1 179 45.3
COL.COLO4_32323 Corchorus olitorius HOM05D007310 ORTHO05D002375 2.0e-22 110.2 135 59.3
CANSAT11G0123 Cannabis sativa HOM05D007310 ORTHO05D002375 4.5e-22 109.0 189 45.0
THA.LOC104804411 Tarenaya hassleriana HOM05D007310 ORTHO05D002375 5.9e-22 108.6 151 57.6
Peaxi162Scf00299g00914 Petunia axillaris HOM05D007310 ORTHO05D002375 7.7e-22 108.2 214 38.3
MD05G1054900 Malus domestica HOM05D007310 ORTHO05D002375 1.0e-21 107.8 208 41.3
Nn5g29980 Nelumbo nucifera HOM05D007310 ORTHO05D002375 1.0e-21 107.8 196 45.4
Hma1.2p1_0784F.1_g217300 Hydrangea macrophylla HOM05D007310 ORTHO05D002375 1.7e-21 107.1 117 59.8
Cpa.g.sc42.21 Carica papaya HOM05D007310 ORTHO05D002375 2.9e-21 106.3 154 53.9
Cc02_g21140 Coffea canephora HOM05D007310 ORTHO05D002375 5.0e-21 105.5 202 45.5
Potri.017G050000 Populus trichocarpa HOM05D007310 ORTHO05D002375 6.5e-21 105.1 191 43.5
Eucgr.I02631 Eucalyptus grandis HOM05D007310 ORTHO05D002375 8.5e-21 104.8 146 48.6
AT2G14095 Arabidopsis thaliana HOM05D007310 ORTHO05D002375 1.1e-20 104.4 133 43.6
Carub.0003s2834 Capsella rubella HOM05D007310 ORTHO05D002375 1.1e-20 104.4 133 42.9
Migut.B00577 Erythranthe guttata HOM05D007310 ORTHO05D002375 1.1e-20 104.4 143 39.2
GSVIVG01015685001 Vitis vinifera HOM05D007310 ORTHO05D002375 1.5e-20 104.0 174 41.4
Sabra16G0196000 Salix brachista HOM05D007310 ORTHO05D002375 4.2e-20 102.4 184 42.9
TWI14G0938 Tripterygium wilfordii HOM05D007310 ORTHO05D002375 4.2e-20 102.4 224 41.5
Nitab4.5_0000863g0020 Nicotiana tabacum HOM05D007310 ORTHO05D002375 9.4e-20 101.3 197 39.6
Oeu022081.1 Olea europaea HOM05D007310 ORTHO05D002375 1.6e-19 100.5 154 44.2
CAN.G523.36 Capsicum annuum HOM05D007310 ORTHO05D002375 2.7e-19 99.8 161 43.5
CARHR104210 Cardamine hirsuta HOM05D007310 ORTHO05D002375 2.7e-19 99.8 121 43.8
Sp3g27450 Schrenkiella parvula HOM05D007310 ORTHO05D002375 6.1e-19 98.6 144 51.4
ECA234G2182 Erigeron canadensis HOM05D007310 ORTHO05D002375 8.0e-19 98.2 137 54.0
HanXRQChr10g0290991 Helianthus annuus HOM05D007310 ORTHO05D002375 3.0e-18 96.3 140 50.0
AL3G45790 Arabidopsis lyrata HOM05D007310 ORTHO05D002375 4.0e-18 95.9 133 42.9
AUR62011722 Chenopodium quinoa HOM05D007310 ORTHO05D002375 5.2e-18 95.5 205 39.0
SalBow8G1210 Salvia bowleyana HOM05D007310 ORTHO05D002375 6.8e-18 95.1 120 39.2
AUR62012905 Chenopodium quinoa HOM05D007310 ORTHO05D002375 1.5e-17 94.0 119 55.5
MBI06_g03314_MAGBIO Magnolia biondii HOM05D007310 ORTHO05D002375 1.5e-17 94.0 147 52.4
PGSC0003DMG400012536 Solanum tuberosum HOM05D007310 ORTHO05D002375 2.0e-17 93.6 215 33.5
SGA_v2.0_scaffold14G07142 Striga asiatica HOM05D007310 ORTHO05D002375 2.0e-17 93.6 119 39.5
Actinidia28038 Actinidia chinensis HOM05D007310 ORTHO05D002375 2.6e-17 93.2 149 47.7
BcaB08g34551 Brassica carinata HOM05D007310 ORTHO05D002375 3.4e-17 92.8 160 44.4
PSO761G0222 Papaver somniferum HOM05D007310 ORTHO05D002375 4.4e-17 92.4 210 30.0
DCAR_021882 Daucus carota HOM05D007310 ORTHO05D002375 7.5e-17 91.7 209 37.3
Solyc01g105600.3 Solanum lycopersicum HOM05D007310 ORTHO05D002375 7.5e-17 91.7 161 37.3
EL10Ac9g21224 Beta vulgaris HOM05D007310 ORTHO05D002375 9.8e-17 91.3 120 51.7
MELO3C018616.2 Cucumis melo HOM05D007310 ORTHO05D002375 9.8e-17 91.3 116 59.5
Sopen01g048060 Solanum pennellii HOM05D007310 ORTHO05D002375 1.3e-16 90.9 161 36.6
Sabra17G0036600 Salix brachista HOM05D007310 ORTHO05D002375 1.7e-16 90.5 96 57.3
TAR376G0136 Trochodendron aralioides HOM05D007310 ORTHO05D002375 1.7e-16 90.5 174 50.0
Sed0021578 Sechium edule HOM05D007310 ORTHO05D002375 5.4e-15 85.5 125 52.8
Sc08g0003780 Simmondsia chinensis HOM05D007310 ORTHO05D002375 7.0e-15 85.1 210 38.6
Nn1g05467 Nelumbo nucifera HOM05D004728 ORTHO05D002375 1.2e-14 84.3 112 53.6
CsaV3_7G006790 Cucumis sativus L. HOM05D007310 ORTHO05D002375 1.6e-14 84.0 118 58.5
ClCG09G015950 Citrullus lanatus HOM05D007310 ORTHO05D002375 2.0e-14 83.6 110 57.3
Sabra17G0042000 Salix brachista HOM05D007310 ORTHO05D002375 4.5e-14 82.4 123 46.3
HPP92_019302 Vanilla planifolia HOM05D007310 ORTHO05D002375 7.7e-14 81.6 148 41.9
PGR042G1769 Punica granatum HOM05D004728 ORTHO05D002375 1.0e-13 81.3 122 50.0
Gohir.D02G199400 Gossypium hirsutum HOM05D007310 ORTHO05D002375 2.9e-13 79.7 132 48.5
BcaC01g03103 Brassica carinata HOM05D007310 ORTHO05D002375 8.6e-13 78.2 137 40.1
Duzib147G1195 Durio zibethinus HOM05D004728 ORTHO05D002375 3.3e-12 76.3 123 47.2
FAN19G1066 Fragaria x ananassa HOM05D004728 ORTHO05D002375 3.3e-12 76.3 196 38.3
CSS0048944 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 4.3e-12 75.9 62 62.9
FAN23G2235 Fragaria x ananassa HOM05D004728 ORTHO05D002375 4.3e-12 75.9 134 46.3
CSS0049063 Camellia sinensis var. sinensis HOM05D004728 ORTHO05D002375 5.6e-12 75.5 165 43.0
Thhalv10022863m.g Eutrema salsugineum HOM05D007310 ORTHO05D002375 5.6e-12 75.5 122 36.1
unitig_0.g2111 Utricularia gibba HOM05D004728 ORTHO05D002375 5.6e-12 75.5 153 44.4
FAN26G1362 Fragaria x ananassa HOM05D004728 ORTHO05D002375 7.3e-12 75.1 134 45.5
PSO700G0139 Papaver somniferum HOM05D007310 ORTHO05D002375 7.3e-12 75.1 137 35.0
Atru.chr13.1111 Acer truncatum HOM05D004728 ORTHO05D002375 9.5e-12 74.7 146 41.8
CSS0024408 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 2.1e-11 73.6 72 59.7
C03p56020 Brassica napus HOM05D007310 ORTHO05D002375 2.8e-11 73.2 138 40.6
BolC3t17888H Brassica oleracea HOM05D007310 ORTHO05D002375 2.8e-11 73.2 138 40.6
FvH4_1g20180 Fragaria vesca HOM05D004728 ORTHO05D002375 3.6e-11 72.8 196 38.3
FAN28G1290 Fragaria x ananassa HOM05D004728 ORTHO05D002375 3.6e-11 72.8 134 44.8
BraA03t13650Z Brassica rapa HOM05D007310 ORTHO05D002375 1.0e-10 71.2 152 38.2
MD08G1189800 Malus domestica HOM05D004728 ORTHO05D002375 1.0e-10 71.2 124 40.3
Atru.chr6.1218 Acer truncatum HOM05D007310 ORTHO05D002375 1.8e-10 70.5 65 60.0
A03p45150 Brassica napus HOM05D007310 ORTHO05D002375 1.8e-10 70.5 137 40.9
Gorai.005G224000 Gossypium raimondii HOM05D007310 ORTHO05D002375 1.8e-10 70.5 153 42.5
MD15G1317700 Malus domestica HOM05D004728 ORTHO05D002375 1.8e-10 70.5 147 38.8
Dinv07081 Davidia involucrata HOM05D004728 ORTHO05D002375 2.3e-10 70.1 137 44.5
Gorai.009G233200 Gossypium raimondii HOM05D004728 ORTHO05D002375 3.0e-10 69.7 130 44.6
ECA247G2878 Erigeron canadensis HOM05D004728 ORTHO05D002375 4.0e-10 69.3 130 43.1
HanXRQChr17g0556311 Helianthus annuus HOM05D004728 ORTHO05D002375 5.2e-10 68.9 117 47.9
RcHm_v2.0_Chr2g0112251 Rosa chinensis HOM05D004728 ORTHO05D002375 1.2e-09 67.8 122 44.3
Lsat_1_v5_gn_1_2840 Lactuca sativa HOM05D004728 ORTHO05D002375 1.5e-09 67.4 105 47.6
Aa31LG8G12500 Aethionema arabicum HOM05D007310 ORTHO05D002375 2.6e-09 66.6 121 36.4
Aqoxy476s002 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 5.7e-09 65.5 168 25.6
Aqoxy6G00703 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 5.7e-09 65.5 168 25.6
CiPaw.16G032300 Carya illinoinensis HOM05D004728 ORTHO05D002375 5.7e-09 65.5 130 40.0
Migut.C01097 Erythranthe guttata HOM05D004728 ORTHO05D002375 5.7e-09 65.5 132 41.7
Sabra02G0079700 Salix brachista HOM05D004728 ORTHO05D002375 5.7e-09 65.5 135 42.2
TAR625G1009 Trochodendron aralioides HOM05D007310 ORTHO05D002375 5.7e-09 65.5 108 36.1
MD15G1377600 Malus domestica HOM05D004728 ORTHO05D002375 7.5e-09 65.1 124 38.7
PSO761G0559 Papaver somniferum HOM05D015253 ORTHO05D002375 9.8e-09 64.7 135 30.4
Cfa017900 Carpinus fangiana HOM05D004728 ORTHO05D002375 1.7e-08 63.9 130 39.2
Zm00001eb027840 Zea mays HOM05D007310 ORTHO05D002375 4.9e-08 62.4 126 38.9
Haze_18251 Corylus avellana HOM05D004728 ORTHO05D002375 8.3e-08 61.6 133 41.4
Lj4A95G11 Lonicera japonica HOM05D004728 ORTHO05D002375 8.3e-08 61.6 117 45.3
Actinidia10351 Actinidia chinensis HOM05D007310 ORTHO05D002375 1.4e-07 60.8 99 57.6
CANSAT01G0157 Cannabis sativa HOM05D004728 ORTHO05D002375 1.8e-07 60.5 183 34.4
CANSAT25G2000 Cannabis sativa HOM05D004728 ORTHO05D002375 2.4e-07 60.1 89 52.8
Duzib132G0922 Durio zibethinus HOM05D007310 ORTHO05D002375 2.4e-07 60.1 143 32.9
Lj2A538G23 Lonicera japonica HOM05D004728 ORTHO05D002375 3.2e-07 59.7 116 31.9
Oeu045990.1 Olea europaea HOM05D004728 ORTHO05D002375 4.1e-07 59.3 188 31.9
COL.COLO4_11993 Corchorus olitorius HOM05D004728 ORTHO05D002375 5.4e-07 58.9 100 51.0
Duzib093G2113 Durio zibethinus HOM05D004728 ORTHO05D002375 5.4e-07 58.9 115 40.9
Gorai.005G094700 Gossypium raimondii HOM05D004728 ORTHO05D002375 5.4e-07 58.9 105 46.7
Gohir.A02G076900 Gossypium hirsutum HOM05D004728 ORTHO05D002375 7.0e-07 58.5 105 46.7
Rhsim06G0077100 Rhododendron simsii HOM05D004728 ORTHO05D002375 7.0e-07 58.5 129 41.1
Duzib116G0314 Durio zibethinus HOM05D004728 ORTHO05D002375 9.2e-07 58.2 123 43.9
unitig_747.g21502 Utricularia gibba HOM05D004728 ORTHO05D002375 9.2e-07 58.2 113 49.6
ATR0684G111 Amborella trichopoda HOM05D007310 ORTHO05D002375 1.2e-06 57.8 88 55.7
Cfa017899 Carpinus fangiana HOM05D004728 ORTHO05D002375 1.2e-06 57.8 136 39.0
Sc01g0000880 Simmondsia chinensis HOM05D004728 ORTHO05D002375 1.2e-06 57.8 134 37.3
GSVIVG01009093001 Vitis vinifera HOM05D004728 ORTHO05D002375 1.2e-06 57.8 101 45.5
Actinidia33119 Actinidia chinensis HOM05D004728 ORTHO05D002375 1.6e-06 57.4 105 49.5
MSTRG.1388 Avicennia marina HOM05D004728 ORTHO05D002375 1.6e-06 57.4 123 40.7
CiPaw.15G045100 Carya illinoinensis HOM05D004728 ORTHO05D002375 2.0e-06 57.0 133 36.1
DCAR_003461 Daucus carota HOM05D004728 ORTHO05D002375 2.0e-06 57.0 117 29.1
Gohir.A05G223000 Gossypium hirsutum HOM05D004728 ORTHO05D002375 2.0e-06 57.0 133 44.4
Lj4A95G12 Lonicera japonica HOM05D004728 ORTHO05D002375 2.0e-06 57.0 117 41.0
Potri.002G101600 Populus trichocarpa HOM05D004728 ORTHO05D002375 2.0e-06 57.0 89 51.7
RcHm_v2.0_Chr2g0112261 Rosa chinensis HOM05D004728 ORTHO05D002375 2.7e-06 56.6 109 39.4
Hund14099 Selenicereus undatus HOM05D004728 ORTHO05D002375 4.6e-06 55.8 107 46.7
Thecc.08G100900 Theobroma cacao HOM05D004728 ORTHO05D002375 4.6e-06 55.8 194 30.9
Gohir.D02G084100 Gossypium hirsutum HOM05D004728 ORTHO05D002375 5.9e-06 55.5 102 46.1


User provided reference genes

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