Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G039000 Glycine max HOM05D006006 ORTHO05D007566 2.4e-206 721.8 348 100.0
Glyma.14G123000 Glycine max HOM05D006006 ORTHO05D007566 2.2e-199 698.7 348 96.0
Phvul.001G072900 Phaseolus vulgaris HOM05D006006 ORTHO05D007566 5.8e-176 620.9 348 85.1
Lalb_Chr04g0263651 Lupinus albus HOM05D006006 ORTHO05D007566 1.3e-170 603.2 346 83.2
VMungo0647G2124 Vigna mungo HOM05D006006 ORTHO05D007566 1.3e-167 593.2 329 86.6
Lj1g0023019 Lotus japonicus HOM05D006006 ORTHO05D007566 6.0e-165 584.3 350 82.0
arahy.Tifrunner.gnm1.ann1.D9Y8GI Arachis hypogaea HOM05D006006 ORTHO05D007566 2.0e-160 569.3 350 80.0
arahy.Tifrunner.gnm1.ann1.T5RWDG Arachis hypogaea HOM05D006006 ORTHO05D007566 2.9e-159 565.5 350 79.1
Medtr1g029000 Medicago truncatula HOM05D006006 ORTHO05D007566 5.0e-159 564.7 351 78.9
Ca_12665_v3 Cicer arietinum L. HOM05D006006 ORTHO05D007566 5.5e-158 561.2 348 81.6
TPR.G33300 Trifolium pratense HOM05D006006 ORTHO05D007566 2.1e-157 559.3 346 80.1
COL.COLO4_04848 Corchorus olitorius HOM05D006006 ORTHO05D007566 1.0e-156 557.0 349 77.1
Thecc.08G145800 Theobroma cacao HOM05D006006 ORTHO05D007566 3.0e-156 555.4 347 76.7
Duzib093G0547 Durio zibethinus HOM05D006006 ORTHO05D007566 3.9e-156 555.1 347 77.2
Psat0s5561g0040 Pisum sativum HOM05D006006 ORTHO05D007566 1.2e-152 543.5 349 77.7
GSVIVG01010048001 Vitis vinifera HOM05D006006 ORTHO05D007566 5.0e-151 538.1 348 72.1
QL02p024995 Quercus lobata HOM05D006006 ORTHO05D007566 1.2e-149 533.5 349 73.1
Prupe.8G021400 Prunus persica HOM05D006006 ORTHO05D007566 4.6e-149 531.6 345 74.5
Gorai.005G081300 Gossypium raimondii HOM05D006006 ORTHO05D007566 1.4e-148 530.0 347 74.6
CiPaw.15G020800 Carya illinoinensis HOM05D006006 ORTHO05D007566 1.8e-148 529.6 350 72.9
Gohir.D02G072100 Gossypium hirsutum HOM05D006006 ORTHO05D007566 3.0e-148 528.9 347 74.4
TAR381G0495 Trochodendron aralioides HOM05D006006 ORTHO05D007566 8.8e-148 527.3 348 71.3
Cpa.g.sc49.54 Carica papaya HOM05D006006 ORTHO05D007566 1.1e-147 526.9 348 72.1
Ciclev10001700m.g Citrus clementina HOM05D006006 ORTHO05D007566 1.1e-147 526.9 350 72.0
Manes.02G175900 Manihot esculenta HOM05D006006 ORTHO05D007566 2.0e-147 526.2 348 73.0
Gohir.A02G066200 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.5e-147 525.8 347 74.1
Cfa018352 Carpinus fangiana HOM05D006006 ORTHO05D007566 5.7e-147 524.6 347 72.3
Lj7A365T41 Lonicera japonica HOM05D006006 ORTHO05D007566 9.7e-147 523.9 348 71.0
Atru.chr13.1712 Acer truncatum HOM05D006006 ORTHO05D007566 8.2e-146 520.8 347 70.3
CSS0044653 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 2.4e-145 519.2 347 72.3
CSS0049727 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 4.1e-145 518.5 347 72.3
TWI34G1885 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 6.9e-145 517.7 348 71.3
THA.LOC104813696 Tarenaya hassleriana HOM05D006006 ORTHO05D007566 3.4e-144 515.4 345 71.6
Potri.002G071300 Populus trichocarpa HOM05D006006 ORTHO05D007566 5.9e-144 514.6 335 72.5
ClCG09G009860 Citrullus lanatus HOM05D006006 ORTHO05D007566 1.0e-143 513.8 349 70.5
TWI60G1394 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 1.0e-143 513.8 348 70.4
CiPaw.16G016900 Carya illinoinensis HOM05D006006 ORTHO05D007566 2.2e-143 512.7 348 71.3
CsaV3_7G024870 Cucumis sativus L. HOM05D006006 ORTHO05D007566 3.8e-143 511.9 349 70.5
Haze_17707 Corylus avellana HOM05D006006 ORTHO05D007566 8.5e-143 510.8 377 67.4
Nn1g06190 Nelumbo nucifera HOM05D006006 ORTHO05D007566 1.1e-142 510.4 346 70.8
FvH4_2g14460 Fragaria vesca HOM05D006006 ORTHO05D007566 1.4e-142 510.0 346 72.0
FAN24G1565 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.9e-142 509.6 346 71.7
Sabra02G0056100 Salix brachista HOM05D006006 ORTHO05D007566 1.9e-142 509.6 335 72.2
Gohir.D03G061500 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.5e-142 509.2 346 72.8
Gorai.013G105300 Gossypium raimondii HOM05D006006 ORTHO05D007566 2.5e-142 509.2 346 72.5
MD10G1017500 Malus domestica HOM05D006006 ORTHO05D007566 2.5e-142 509.2 345 71.9
PGR042G3502 Punica granatum HOM05D006006 ORTHO05D007566 2.5e-142 509.2 348 70.7
Eucgr.F04261 Eucalyptus grandis HOM05D006006 ORTHO05D007566 5.5e-142 508.1 343 69.4
RcHm_v2.0_Chr6g0276791 Rosa chinensis HOM05D006006 ORTHO05D007566 1.6e-141 506.5 349 70.8
Nn5g28652 Nelumbo nucifera HOM05D006006 ORTHO05D007566 2.1e-141 506.1 348 69.0
Nitab4.5_0000633g0110 Nicotiana tabacum HOM05D006006 ORTHO05D007566 2.1e-141 506.1 345 70.1
FAN27G0920 Fragaria x ananassa HOM05D006006 ORTHO05D007566 2.7e-141 505.8 346 71.1
CANSAT25G3881 Cannabis sativa HOM05D006006 ORTHO05D007566 3.6e-141 505.4 347 70.3
MD05G1017500 Malus domestica HOM05D006006 ORTHO05D007566 4.7e-141 505.0 345 71.0
Aqoxy6G00385 Aquilegia oxysepala HOM05D006006 ORTHO05D007566 2.3e-140 502.7 348 68.1
AT1G21370 Arabidopsis thaliana HOM05D006006 ORTHO05D007566 3.0e-140 502.3 347 70.3
FAN15G3392 Fragaria x ananassa HOM05D006006 ORTHO05D007566 3.0e-140 502.3 346 70.5
PGSC0003DMG400017575 Solanum tuberosum HOM05D006006 ORTHO05D007566 3.9e-140 501.9 344 69.2
Sopen06g020580 Solanum pennellii HOM05D006006 ORTHO05D007566 6.7e-140 501.1 344 69.8
Carub.0001s2078 Capsella rubella HOM05D006006 ORTHO05D007566 8.8e-140 500.7 348 69.8
CAN.G62.45 Capsicum annuum HOM05D006006 ORTHO05D007566 8.8e-140 500.7 346 69.9
Thhalv10008107m.g Eutrema salsugineum HOM05D006006 ORTHO05D007566 1.1e-139 500.4 347 69.7
Solyc06g060460.3 Solanum lycopersicum HOM05D006006 ORTHO05D007566 1.1e-139 500.4 344 69.5
Sed0017044 Sechium edule HOM05D006006 ORTHO05D007566 4.8e-138 495.0 350 68.6
MBI03_g11319_MAGBIO Magnolia biondii HOM05D006006 ORTHO05D007566 1.1e-137 493.8 343 66.2
DCAR_008158 Daucus carota HOM05D006006 ORTHO05D007566 1.8e-137 493.0 340 68.8
Oeu051259.1 Olea europaea HOM05D006006 ORTHO05D007566 1.8e-137 493.0 345 70.1
CARHR021760 Cardamine hirsuta HOM05D006006 ORTHO05D007566 9.1e-137 490.7 350 68.3
MELO3C023695.2 Cucumis melo HOM05D006006 ORTHO05D007566 2.0e-136 489.6 408 60.5
HanXRQChr04g0109001 Helianthus annuus HOM05D006006 ORTHO05D007566 2.0e-136 489.6 347 68.3
Sp1g18920 Schrenkiella parvula HOM05D006006 ORTHO05D007566 4.5e-136 488.4 348 68.4
Oeu014478.2 Olea europaea HOM05D006006 ORTHO05D007566 5.9e-136 488.0 364 65.9
Lj4A692T31 Lonicera japonica HOM05D006006 ORTHO05D007566 7.7e-136 487.6 346 67.1
FAN20G0686 Fragaria x ananassa HOM05D006006 ORTHO05D007566 2.9e-135 485.7 378 64.8
Aa31LG7G5530 Aethionema arabicum HOM05D006006 ORTHO05D007566 1.9e-134 483.0 348 68.1
PSO675G8728 Papaver somniferum HOM05D006006 ORTHO05D007566 1.9e-134 483.0 346 67.3
ATR1136G139 Amborella trichopoda HOM05D006006 ORTHO05D007566 4.2e-134 481.9 340 67.6
PSO541G2188 Papaver somniferum HOM05D006006 ORTHO05D007566 1.6e-133 479.9 346 66.5
BcaB07g32125 Brassica carinata HOM05D006006 ORTHO05D007566 3.6e-133 478.8 347 67.1
MSTRG.24200 Avicennia marina HOM05D006006 ORTHO05D007566 6.1e-133 478.0 345 67.2
BraA06t24839Z Brassica rapa HOM05D006006 ORTHO05D007566 1.8e-132 476.5 351 66.7
Ah.01g005030 Amaranthus hybridus HOM05D006006 ORTHO05D007566 2.3e-132 476.1 346 67.1
HanXRQChr08g0217661 Helianthus annuus HOM05D006006 ORTHO05D007566 3.0e-132 475.7 352 65.9
Migut.N03230 Erythranthe guttata HOM05D006006 ORTHO05D007566 4.0e-132 475.3 342 68.1
C05p20260 Brassica napus HOM05D006006 ORTHO05D007566 2.6e-131 472.6 352 66.2
BolC5t30719H Brassica oleracea HOM05D006006 ORTHO05D007566 2.6e-131 472.6 352 66.2
AL1G34470 Arabidopsis lyrata HOM05D006006 ORTHO05D007566 3.3e-131 472.2 301 73.8
BcaC05g26044 Brassica carinata HOM05D006006 ORTHO05D007566 5.7e-131 471.5 352 66.2
A06p17420 Brassica napus HOM05D006006 ORTHO05D007566 7.5e-131 471.1 348 66.1
BcaB03g12819 Brassica carinata HOM05D006006 ORTHO05D007566 1.7e-130 469.9 348 65.5
EL10Ac9g20647 Beta vulgaris HOM05D006006 ORTHO05D007566 6.3e-130 468.0 346 65.0
Cc10_g14250 Coffea canephora HOM05D006006 ORTHO05D007566 6.3e-130 468.0 325 67.7
Os04g0438500 Oryza sativa ssp. japonica HOM05D006006 ORTHO05D007566 2.4e-129 466.1 349 65.6
unitig_21.g20180 Utricularia gibba HOM05D006006 ORTHO05D007566 8.5e-127 457.6 346 64.7
Lsat_1_v5_gn_1_8980 Lactuca sativa HOM05D006006 ORTHO05D007566 2.7e-125 452.6 292 74.3
SHI09110 Sapria himalayana HOM05D006006 ORTHO05D007566 5.2e-124 448.4 348 62.6
HPP92_004629 Vanilla planifolia HOM05D006006 ORTHO05D007566 7.5e-123 444.5 347 59.4
Zm00001eb422860 Zea mays HOM05D006006 ORTHO05D007566 9.8e-123 444.1 350 64.0
C08p20770 Brassica napus HOM05D006006 ORTHO05D007566 1.7e-122 443.4 324 65.7
unitig_744.g24565 Utricularia gibba HOM05D006006 ORTHO05D007566 1.8e-121 439.9 349 61.3
Actinidia15154 Actinidia chinensis HOM05D006006 ORTHO05D007566 2.0e-120 436.4 283 73.1
CDE08G1689 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 1.5e-115 420.2 250 76.4
CDE06G2625 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 1.7e-114 416.8 244 77.5
Peaxi162Scf00051g00516 Petunia axillaris HOM05D006006 ORTHO05D007566 2.8e-114 416.0 233 80.7
BolC8t49716H Brassica oleracea HOM05D006006 ORTHO05D007566 6.3e-114 414.8 325 62.5
ECA247G2705 Erigeron canadensis HOM05D006006 ORTHO05D007566 1.4e-113 413.7 255 76.5
Dinv25817 Davidia involucrata HOM05D006006 ORTHO05D007566 1.1e-105 387.5 253 74.3
Mapoly0050s0105 Marchantia polymorpha HOM05D006006 ORTHO05D007566 6.2e-101 371.7 302 60.6
SEGI_37970 Sequoiadendron giganteum HOM05D006006 ORTHO05D007566 1.0e-100 370.9 332 58.7
Pp3c25_12020 Physcomitrium patens HOM05D006006 ORTHO05D007566 2.2e-98 363.2 327 55.4
BcaC07g39093 Brassica carinata HOM05D006006 ORTHO05D007566 3.7e-98 362.5 325 58.2
C06p40100 Brassica napus HOM05D006006 ORTHO05D007566 4.7e-93 345.5 232 69.8
Gohir.A02G108508 Gossypium hirsutum HOM05D006006 ORTHO05D007566 4.9e-90 335.5 243 70.4
Gohir.A02G108509 Gossypium hirsutum HOM05D006006 ORTHO05D007566 4.9e-90 335.5 243 70.4
Sc02g0004370 Simmondsia chinensis HOM05D006006 ORTHO05D007566 4.1e-89 332.4 242 67.8
Nitab4.5_0008475g0010 Nicotiana tabacum HOM05D006006 ORTHO05D007566 4.6e-88 328.9 241 67.2
Pp3c6_4630 Physcomitrium patens HOM05D006006 ORTHO05D007566 2.1e-85 320.1 330 50.3
SMO228G0011 Selaginella moellendorffii HOM05D006006 ORTHO05D007566 4.7e-85 318.9 244 61.5
SGA_v2.0_scaffold25G11170 Striga asiatica HOM05D006006 ORTHO05D007566 1.1e-81 307.8 242 64.0
AagrBONN_evm.TU.Sc2ySwM_344.2333 Anthoceros agrestis HOM05D006006 ORTHO05D007566 1.6e-64 250.8 173 68.2
MCO04G174 Micromonas commoda HOM05D006006 ORTHO05D007566 6.2e-61 238.8 248 47.6
TAR625G0955 Trochodendron aralioides HOM05D006006 ORTHO05D007566 5.3e-60 235.7 165 67.9
AUR62025132 Chenopodium quinoa HOM05D006006 ORTHO05D007566 2.1e-56 223.8 195 57.9
PRCOL_00006391 Prasinoderma coloniale HOM05D006006 ORTHO05D007566 6.0e-56 222.2 199 53.3
AUR62037127 Chenopodium quinoa HOM05D006006 ORTHO05D007566 5.6e-54 215.7 195 56.4
Cre02.g116000 Chlamydomonas reinhardtii HOM05D006006 ORTHO05D007566 3.8e-50 203.0 180 56.7
Pp3c5_24650 Physcomitrium patens HOM05D006006 ORTHO05D007566 8.7e-47 191.8 186 53.8
SGA_v2.0_scaffold35G14089 Striga asiatica HOM05D006006 ORTHO05D007566 2.9e-26 123.6 79 69.6
Ah.02g110550 Amaranthus hybridus HOM05D006006 ORTHO05D007566 1.9e-25 120.9 73 72.6
CDE04G1521 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 1.2e-19 101.7 57 73.7
Pp3c16_22840 Physcomitrium patens HOM05D006006 ORTHO05D318415 7.2e-09 65.9 51 62.7


User provided reference genes

Program Settings