Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 4.3e-256 887.5 446 100.0
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 1.1e-182 643.7 620 60.3
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.6e-117 427.2 759 41.2
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 3.3e-75 286.6 473 43.8
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 1.3e-66 258.1 314 50.6
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 2.4e-57 227.3 228 52.2
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 2.2e-55 220.7 199 57.8
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 1.6e-53 214.5 267 46.8
arahy.Tifrunner.gnm1.ann1.710PNE Arachis hypogaea HOM05D006236 ORTHO05D003486 3.4e-51 206.8 386 37.8
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 2.2e-50 204.1 224 51.3
arahy.Tifrunner.gnm1.ann1.BNP26P Arachis hypogaea HOM05D006236 ORTHO05D003486 3.1e-49 200.3 386 37.0
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 3.4e-43 180.3 194 48.5
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 8.3e-42 175.6 485 32.8
Ca_12735_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 1.3e-39 168.3 200 50.5
Ca_12741_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 1.3e-39 168.3 200 50.5
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 4.1e-33 146.7 494 30.6
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 1.5e-30 138.3 203 41.9
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 7.8e-24 115.9 199 39.2
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 3.3e-22 110.5 202 36.6
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 2.8e-21 107.5 202 34.7
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 4.7e-21 106.7 205 36.6
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 1.4e-20 105.1 204 34.3
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 2.3e-20 104.4 113 51.3
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 6.8e-20 102.8 199 36.7
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 1.2e-19 102.1 201 35.3
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 4.4e-19 100.1 201 35.8
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 4.4e-19 100.1 200 34.0
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 7.6e-19 99.4 385 31.2
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 1.7e-18 98.2 196 32.7
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 3.7e-18 97.1 322 30.1
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 8.4e-18 95.9 110 48.2
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 1.1e-17 95.5 221 32.6
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 4.1e-17 93.6 125 46.4
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 9.2e-17 92.4 198 35.9
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 2.7e-16 90.9 182 35.2
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 3.5e-16 90.5 320 31.9
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 4.6e-16 90.1 163 36.8
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 6.0e-16 89.7 157 35.7
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 6.0e-16 89.7 313 32.3
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 7.8e-16 89.4 315 26.7
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 7.8e-16 89.4 173 34.7
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 1.0e-15 89.0 291 32.3
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 1.0e-15 89.0 278 27.3
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.7e-15 88.2 158 37.3
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 1.7e-15 88.2 204 32.4
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 3.0e-15 87.4 204 31.9
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 3.0e-15 87.4 112 42.9
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 3.0e-15 87.4 424 26.9
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 5.1e-15 86.7 112 43.8
TPR.G39827 Trifolium pratense HOM05D006236 ORTHO05D003486 5.1e-15 86.7 103 47.6
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 8.6e-15 85.9 199 32.7
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 1.1e-14 85.5 202 32.7
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 1.5e-14 85.1 200 31.0
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 1.9e-14 84.7 114 44.7
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 3.3e-14 84.0 105 42.9
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 4.3e-14 83.6 106 41.5
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 4.3e-14 83.6 112 42.0
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 4.3e-14 83.6 128 39.8
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 9.6e-14 82.4 179 37.4
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 9.6e-14 82.4 109 41.3
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 9.6e-14 82.4 314 26.1
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 1.2e-13 82.0 221 32.1
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 1.2e-13 82.0 118 39.0
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 2.1e-13 81.3 102 44.1
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 2.8e-13 80.9 111 42.3
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 2.8e-13 80.9 334 26.9
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 3.6e-13 80.5 187 35.3
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 4.7e-13 80.1 332 26.2
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.1e-12 79.0 222 31.5
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 1.4e-12 78.6 342 26.6
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 1.8e-12 78.2 200 31.5
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 1.8e-12 78.2 114 40.4
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 2.4e-12 77.8 99 44.4
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 2.4e-12 77.8 99 43.4
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 2.4e-12 77.8 106 38.7
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 3.1e-12 77.4 207 32.4
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 3.1e-12 77.4 201 31.3
RcHm_v2.0_Chr6g0296791 Rosa chinensis HOM05D006236 ORTHO05D003486 3.1e-12 77.4 107 39.3
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 5.2e-12 76.6 210 30.5
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 5.2e-12 76.6 120 40.8
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 6.8e-12 76.3 137 35.8
SalBow7G0481 Salvia bowleyana HOM05D006236 ORTHO05D003486 6.8e-12 76.3 131 29.8
SalBow7G2443 Salvia bowleyana HOM05D006236 ORTHO05D003486 6.8e-12 76.3 158 27.8
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 6.8e-12 76.3 109 39.4
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 6.8e-12 76.3 109 39.4
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 8.9e-12 75.9 340 27.4
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 1.5e-11 75.1 302 29.5
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 1.5e-11 75.1 99 42.4
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 2.0e-11 74.7 207 31.9
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 2.6e-11 74.3 113 39.8
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 2.6e-11 74.3 107 41.1
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 2.6e-11 74.3 99 41.4
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 4.4e-11 73.6 284 28.5
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 4.4e-11 73.6 106 39.6
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 4.4e-11 73.6 112 43.8
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 5.8e-11 73.2 272 28.3
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 5.8e-11 73.2 324 28.4
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 5.8e-11 73.2 111 42.3
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 7.6e-11 72.8 107 45.8
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 9.9e-11 72.4 353 27.5
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 9.9e-11 72.4 408 26.7
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 9.9e-11 72.4 291 26.1
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.3e-10 72.0 314 24.8
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 1.3e-10 72.0 379 26.1
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 1.7e-10 71.6 403 25.8
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 1.7e-10 71.6 106 35.8
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 2.2e-10 71.2 149 32.9
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 2.2e-10 71.2 169 32.5
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 2.9e-10 70.9 211 31.8
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 2.9e-10 70.9 235 27.7
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 2.9e-10 70.9 178 34.8
MELO3C012710.2 Cucumis melo HOM05D006236 ORTHO05D003486 2.9e-10 70.9 182 31.3
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 2.9e-10 70.9 375 26.1
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.9e-10 70.9 218 29.4
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 3.8e-10 70.5 101 39.6
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 4.9e-10 70.1 139 31.7
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 4.9e-10 70.1 204 31.4
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 4.9e-10 70.1 100 45.0
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 4.9e-10 70.1 134 36.6
TPR.G24496 Trifolium pratense HOM05D006236 ORTHO05D003486 4.9e-10 70.1 97 45.4
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 6.4e-10 69.7 310 29.0
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 8.4e-10 69.3 194 30.4
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 8.4e-10 69.3 108 38.0
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 1.1e-09 68.9 201 29.9
Migut.C01072 Erythranthe guttata HOM05D006236 ORTHO05D003486 1.1e-09 68.9 137 34.3
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.1e-09 68.9 287 26.8
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 1.4e-09 68.6 319 28.5
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 2.4e-09 67.8 111 35.1
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 2.4e-09 67.8 111 35.1
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 2.4e-09 67.8 383 25.1
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 2.4e-09 67.8 304 23.7
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 4.2e-09 67.0 335 26.3
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 4.2e-09 67.0 98 36.7
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 5.4e-09 66.6 199 31.7
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 5.4e-09 66.6 199 31.7
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 5.4e-09 66.6 77 40.3
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 9.3e-09 65.9 111 34.2
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 9.3e-09 65.9 335 25.7
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 9.3e-09 65.9 326 27.6
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 9.3e-09 65.9 200 31.5
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 1.2e-08 65.5 243 27.6
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 1.2e-08 65.5 111 34.2
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 1.2e-08 65.5 111 34.2
Gohir.D02G077700 Gossypium hirsutum HOM05D006236 ORTHO05D003486 1.2e-08 65.5 90 40.0
HanXRQChr05g0149711 Helianthus annuus HOM05D006236 ORTHO05D003486 1.2e-08 65.5 106 35.8
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 1.6e-08 65.1 194 29.9
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 2.1e-08 64.7 103 36.9
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 3.5e-08 63.9 141 31.2
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 3.5e-08 63.9 326 27.3
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 3.5e-08 63.9 110 30.0
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 3.5e-08 63.9 110 30.0
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 7.8e-08 62.8 141 31.2
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 7.8e-08 62.8 111 33.3
SEGI_21165 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 1.0e-07 62.4 101 34.7
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 1.3e-07 62.0 197 28.4
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 1.3e-07 62.0 313 26.5
FAN27G1104 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.7e-07 61.6 294 25.5
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 2.3e-07 61.2 131 29.8
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 2.3e-07 61.2 131 29.8
arahy.Tifrunner.gnm1.ann1.3CVD71 Arachis hypogaea HOM05D024686 ORTHO05D003486 3.0e-07 60.8 142 28.2
Aqoxy3G01606 Aquilegia oxysepala HOM05D020429 ORTHO05D023582 3.9e-07 60.5 201 29.9
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 6.6e-07 59.7 111 36.0
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 8.7e-07 59.3 138 32.6
Pp3c14_13780 Physcomitrium patens HOM05D002377 ORTHO05D003486 8.7e-07 59.3 98 37.8
Pp3c8_15980 Physcomitrium patens HOM05D006236 ORTHO05D003486 8.7e-07 59.3 110 33.6
SEGI_20168 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 8.7e-07 59.3 100 34.0
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 1.5e-06 58.5 287 25.4
Mapoly0015s0190 Marchantia polymorpha HOM05D006236 ORTHO05D003486 1.9e-06 58.2 104 33.7
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 2.5e-06 57.8 323 25.1
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 2.5e-06 57.8 163 31.9
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.5e-06 57.8 335 26.9
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 4.3e-06 57.0 217 26.3
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 4.3e-06 57.0 310 23.9
Cpa.g.sc1156.3 Carica papaya HOM05D006236 ORTHO05D003486 5.6e-06 56.6 34 61.8
SEGI_27702 Sequoiadendron giganteum HOM05D002377 ORTHO05D003486 5.6e-06 56.6 91 36.3


User provided reference genes

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