Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1907.1 966 100.0
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1682.9 962 88.9
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1635.5 1037 81.3
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1622.4 964 85.7
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1614.4 968 85.0
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1586.6 968 83.9
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1581.2 965 84.0
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1576.6 967 83.0
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1570.1 970 82.7
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1489.9 971 78.5
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1480.7 971 78.3
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1472.2 972 77.5
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1452.2 967 76.7
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1446.0 967 75.9
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1444.1 972 76.2
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1442.9 983 75.1
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1436.4 974 75.5
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1435.2 966 75.7
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1433.7 967 75.3
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1429.8 974 75.1
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1427.2 976 75.0
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1426.4 973 74.7
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1425.6 968 74.7
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1419.1 973 75.0
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1417.1 993 73.0
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1416.7 969 74.7
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1414.1 995 72.7
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1409.4 974 74.5
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1407.1 977 73.7
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1406.3 924 77.8
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1406.3 933 77.5
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1406.3 977 74.1
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1406.0 986 73.1
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1406.0 970 74.4
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1403.7 1004 71.6
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1402.9 969 74.8
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1402.9 978 72.2
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1400.2 969 74.6
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1400.2 970 74.5
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1399.0 975 73.5
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1396.3 977 73.2
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1390.9 978 73.1
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1390.6 980 71.9
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1390.2 975 72.8
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1390.2 980 71.8
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1389.4 982 72.9
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1387.5 967 73.3
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1386.3 976 73.5
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1384.8 981 72.6
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1380.2 976 73.0
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1367.1 967 72.5
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1365.9 971 72.8
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1361.7 968 71.8
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1361.3 1002 71.0
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1357.4 967 72.2
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1356.7 967 72.2
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1356.3 966 72.0
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1355.5 970 72.2
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1355.1 967 72.0
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1352.8 928 74.9
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1352.0 964 73.3
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1350.9 969 70.2
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1350.9 973 71.6
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1350.5 967 72.0
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1350.1 967 71.8
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1349.7 978 69.8
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1349.3 972 71.3
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1348.2 972 71.4
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1346.6 964 73.1
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1346.3 968 70.7
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1345.5 968 70.7
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1345.1 965 71.3
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1343.9 977 71.8
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1338.9 983 70.7
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1338.6 976 70.3
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1329.7 987 70.2
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1328.5 968 70.2
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1327.0 988 71.0
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1325.8 995 69.4
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1323.1 970 69.6
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1315.8 971 69.2
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1312.7 971 69.2
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1307.7 1004 67.3
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1298.5 1057 65.8
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1295.4 995 68.0
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1288.5 942 70.0
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1285.4 990 66.2
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1284.6 962 67.8
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1283.9 982 68.4
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1274.2 974 69.2
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1263.8 973 69.4
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1262.7 977 66.4
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1257.3 1104 61.0
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1245.0 971 66.6
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1241.9 972 66.3
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1238.8 1137 59.0
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1234.2 940 67.8
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1229.2 965 64.8
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1226.1 968 66.2
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1216.8 964 66.4
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1214.1 975 67.0
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1211.8 920 68.7
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1211.4 988 64.6
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1202.2 868 72.4
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1201.4 967 65.1
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1200.7 973 65.5
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1192.2 964 64.8
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1167.1 903 66.4
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1164.8 966 62.9
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1162.1 1003 61.7
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1153.3 972 63.5
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1148.3 972 63.3
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1144.0 900 66.9
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1139.8 966 60.9
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1132.5 975 60.5
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1113.2 966 59.5
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1109.0 644 89.0
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1104.4 863 67.3
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1098.6 937 60.7
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1093.6 810 70.4
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 1.0e-307 1060.1 943 61.9
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 8.6e-294 1013.8 945 58.5
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 4.3e-277 958.4 874 58.8
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 1.1e-272 943.7 781 64.5
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 1.1e-261 907.1 632 74.1
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 6.8e-259 897.9 627 74.5
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 2.1e-255 886.3 998 51.0
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 4.8e-252 875.2 999 49.9
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 8.7e-238 827.8 935 49.4
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 2.4e-227 793.1 971 46.9
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 1.2e-226 790.8 623 64.5
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 3.6e-223 779.2 979 45.5
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 6.5e-217 758.4 1189 41.0
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 7.7e-202 708.4 839 44.6
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 3.0e-190 669.8 343 96.2
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 2.2e-180 637.1 465 73.3
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 2.2e-180 637.1 472 73.1
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 1.5e-149 534.6 316 84.2
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 7.6e-149 532.3 573 51.3
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 3.1e-142 510.4 533 53.1
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 1.2e-138 498.4 347 74.4
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 4.8e-111 406.8 258 81.4
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 1.5e-109 401.7 299 70.6
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 2.2e-103 381.3 237 81.0
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 3.0e-97 360.9 233 81.1
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 1.4e-86 325.5 238 68.1
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 2.0e-80 305.1 274 63.9
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 3.3e-80 304.3 163 84.7
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 7.5e-80 303.1 282 63.5
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 3.7e-79 300.8 812 29.7
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 1.8e-70 271.9 174 76.4
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 1.9e-54 218.8 120 84.2
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 2.3e-52 211.8 108 89.8
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 2.4e-46 191.8 147 70.7
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 7.0e-46 190.3 418 32.8
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 1.2e-45 189.5 197 57.4
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 1.0e-44 186.4 153 62.7
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 3.9e-44 184.5 132 73.5
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.0e-40 172.2 90 81.1
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 2.2e-39 168.7 130 67.7
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 5.2e-33 147.5 120 69.2
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.1e-29 135.6 72 79.2
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 6.6e-28 130.6 72 81.9
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 1.2e-24 119.8 96 61.5
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 1.5e-24 119.4 80 72.5
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 1.9e-19 102.4 98 54.1
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 1.9e-19 102.4 98 54.1
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 1.9e-19 102.4 113 50.4
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 3.3e-19 101.7 80 63.8
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 6.9e-17 94.0 90 63.3
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 3.3e-11 75.1 47 72.3
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 4.3e-11 74.7 46 76.1
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 7.4e-11 73.9 80 53.8
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 8.1e-10 70.5 35 88.6
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 1.4e-09 69.7 65 52.3


User provided reference genes

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