Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 1.1e-259 899.4 457 100.0
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 1.7e-239 832.4 468 91.7
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 8.4e-215 750.4 457 85.3
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 1.9e-214 749.2 452 82.7
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 3.2e-214 748.4 452 84.1
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 9.2e-214 746.9 443 86.2
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 2.0e-208 729.2 453 82.3
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 1.7e-204 716.1 451 82.3
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 1.1e-201 706.8 451 80.0
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 2.6e-200 702.2 453 79.7
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 1.2e-197 693.3 452 79.4
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 3.4e-184 648.7 452 75.9
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 3.4e-176 622.1 437 74.4
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 4.5e-168 595.1 460 68.3
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 3.8e-167 592.0 458 67.7
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 3.8e-167 592.0 469 67.6
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 5.5e-166 588.2 461 65.7
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 9.4e-166 587.4 467 66.8
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 1.6e-165 586.6 466 65.5
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 8.8e-164 580.9 463 65.0
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 2.0e-163 579.7 461 65.7
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 3.3e-163 578.9 461 65.1
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 3.7e-162 575.5 464 64.4
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 1.4e-161 573.5 460 66.5
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 1.8e-161 573.2 461 65.3
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 3.1e-161 572.4 460 66.3
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 1.7e-159 566.6 468 64.3
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 2.2e-159 566.2 462 63.6
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 2.9e-159 565.8 461 63.6
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 2.9e-159 565.8 458 64.6
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 3.2e-158 562.4 462 62.6
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 7.2e-158 561.2 458 63.8
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 9.4e-158 560.8 471 62.8
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 1.6e-157 560.1 472 61.7
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 9.7e-155 550.8 458 61.4
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 1.7e-154 550.1 518 59.7
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 1.8e-153 546.6 476 60.3
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 3.1e-153 545.8 447 65.1
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 3.5e-152 542.3 461 64.0
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 2.2e-151 539.7 474 59.1
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 3.8e-151 538.9 478 59.4
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 1.1e-150 537.3 554 55.4
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 1.2e-149 533.9 493 59.8
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 1.6e-149 533.5 468 60.7
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 4.7e-149 531.9 495 60.8
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 2.3e-148 529.6 463 60.7
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 2.3e-148 529.6 462 59.1
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 5.2e-148 528.5 495 61.2
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 6.7e-148 528.1 502 58.6
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 1.5e-147 526.9 495 60.4
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 4.4e-147 525.4 459 60.8
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 5.7e-147 525.0 464 59.1
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.7e-146 523.5 466 60.9
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 2.2e-146 523.1 497 60.0
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 2.8e-146 522.7 459 60.6
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 3.7e-146 522.3 469 59.7
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 6.3e-146 521.5 459 60.6
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 8.2e-146 521.2 464 60.3
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 1.4e-145 520.4 460 60.2
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 2.4e-145 519.6 463 60.9
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 9.1e-145 517.7 463 60.7
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.2e-144 517.3 473 58.4
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 1.6e-144 516.9 464 58.4
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 3.5e-144 515.8 465 58.3
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 4.5e-144 515.4 465 58.3
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 4.5e-144 515.4 464 58.2
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 4.5e-144 515.4 495 59.4
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 4.5e-144 515.4 464 61.6
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 1.7e-143 513.5 400 68.2
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 1.7e-143 513.5 468 59.0
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 2.2e-143 513.1 501 59.1
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 3.8e-143 512.3 463 57.9
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 5.0e-143 511.9 465 57.8
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 5.0e-143 511.9 463 58.3
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 6.5e-143 511.5 473 59.8
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 6.5e-143 511.5 469 58.8
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 1.5e-142 510.4 469 57.4
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 1.5e-142 510.4 473 58.4
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 3.2e-142 509.2 475 58.5
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 4.2e-142 508.8 439 61.5
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 5.5e-142 508.4 451 60.3
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 3.6e-141 505.8 476 56.9
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 6.1e-141 505.0 465 58.7
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 1.0e-140 504.2 476 57.8
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 1.0e-140 504.2 461 57.9
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 1.2e-139 500.7 472 58.3
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 1.2e-139 500.7 440 58.6
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 2.0e-139 500.0 465 56.6
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 9.8e-139 497.7 461 57.7
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 1.3e-138 497.3 476 56.9
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 1.7e-138 496.9 474 56.5
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 4.8e-138 495.4 448 59.6
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 8.3e-138 494.6 451 57.6
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 1.8e-137 493.4 477 56.4
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 4.1e-137 492.3 397 65.2
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 5.4e-137 491.9 465 56.3
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 7.0e-137 491.5 465 56.1
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 3.5e-136 489.2 460 57.0
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 1.1e-134 484.2 487 55.4
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 7.2e-134 481.5 442 58.4
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 4.4e-131 472.2 439 59.7
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 1.7e-130 470.3 454 57.7
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 3.7e-130 469.2 455 57.4
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 5.4e-129 465.3 468 54.9
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 5.4e-129 465.3 468 54.9
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 5.4e-129 465.3 442 53.6
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 7.8e-128 461.5 466 54.1
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.3e-127 459.9 454 57.0
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 2.9e-127 459.5 398 62.1
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 3.8e-127 459.1 453 55.0
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 3.8e-127 459.1 457 55.1
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 1.6e-125 453.8 465 54.4
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 2.1e-125 453.4 466 54.3
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 4.7e-125 452.2 438 55.7
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 3.0e-124 449.5 475 53.7
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 4.0e-124 449.1 407 60.2
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 6.8e-124 448.4 453 54.1
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 2.9e-122 443.0 461 53.1
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 2.9e-122 443.0 445 54.8
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 4.9e-122 442.2 433 57.5
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 1.4e-121 440.7 460 55.7
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 5.0e-119 432.2 494 51.0
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 1.5e-118 430.6 442 52.0
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 9.5e-118 427.9 396 58.3
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 2.6e-115 419.9 406 55.2
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 1.6e-112 410.6 438 52.3
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 2.7e-112 409.8 451 51.0
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 1.8e-108 397.1 456 49.3
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 3.0e-103 379.8 432 51.2
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 5.1e-103 379.0 449 48.8
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 3.3e-94 349.7 449 44.8
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 2.6e-91 340.1 287 63.1
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 4.0e-84 316.2 454 42.5
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 5.3e-84 315.8 537 40.2
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.5e-83 314.3 448 42.4
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 3.4e-83 313.2 304 56.2
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 7.6e-83 312.0 213 72.8
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 2.2e-82 310.5 448 41.7
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 2.7e-80 303.5 470 40.9
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 1.3e-79 301.2 446 40.8
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 1.8e-79 300.8 434 42.4
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 3.9e-79 299.7 454 41.2
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 3.9e-79 299.7 289 58.5
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 5.1e-79 299.3 208 70.7
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 9.6e-78 295.0 258 60.9
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 1.3e-77 294.7 527 38.0
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 2.3e-71 273.9 272 55.1
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 1.1e-70 271.6 437 40.0
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 2.1e-69 267.3 433 39.7
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 6.9e-68 262.3 566 34.8
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 6.9e-68 262.3 329 45.0
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 2.2e-66 257.3 451 39.9
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 5.5e-65 252.7 574 33.6
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 9.3e-65 251.9 194 64.9
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 1.3e-63 248.1 594 34.3
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 2.2e-61 240.7 320 43.8
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 9.7e-54 215.3 294 42.2
HPP92_011782 Vanilla planifolia HOM05D003996 ORTHO05D004665 8.5e-50 202.2 144 66.7
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 7.9e-48 195.7 182 59.3
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 2.8e-37 160.6 127 59.1
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.0e-34 152.1 234 40.6
Actinidia03595 Actinidia chinensis HOM05D003996 ORTHO05D004665 2.7e-24 117.5 117 52.1
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 4.7e-24 116.7 186 38.7
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.0e-23 115.5 66 80.3
Hund15378 Selenicereus undatus HOM05D003996 ORTHO05D004665 4.4e-22 110.2 111 55.9
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 2.2e-21 107.8 70 68.6
Cre12.g513852 Chlamydomonas reinhardtii HOM05D003996 ORTHO05D004665 7.0e-12 76.3 131 40.5
unitig_26.g9925 Utricularia gibba HOM05D003996 ORTHO05D004665 4.5e-11 73.6 52 65.4
MCO15G069 Micromonas commoda HOM05D003996 ORTHO05D004665 2.9e-10 70.9 121 38.8
Os05g0597400 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 4.3e-09 67.0 54 55.6
BcaC09g50171 Brassica carinata HOM05D003996 ORTHO05D092235 6.8e-07 59.7 49 59.2


User provided reference genes

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