Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 4.3e-178 627.9 315 100.0
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 2.8e-84 316.2 296 59.1
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 2.4e-80 303.1 312 51.9
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 7.3e-77 291.6 325 48.6
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 1.6e-76 290.4 297 51.9
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 1.1e-75 287.7 303 52.5
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 7.6e-74 281.6 304 52.3
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 1.7e-73 280.4 290 50.3
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 3.2e-72 276.2 323 47.1
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 3.0e-70 269.6 278 52.2
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 1.9e-69 266.9 358 45.0
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 5.6e-69 265.4 320 47.8
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 1.5e-66 257.3 287 51.9
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 4.5e-66 255.8 287 52.3
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 7.6e-66 255.0 289 50.9
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 1.3e-65 254.2 292 49.7
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 8.4e-65 251.5 294 50.0
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 1.1e-64 251.1 275 52.0
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 1.1e-64 251.1 294 50.0
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.1e-64 251.1 293 49.1
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 2.4e-64 250.0 294 50.0
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 2.4e-64 250.0 294 50.0
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 3.2e-64 249.6 288 48.3
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 3.2e-64 249.6 263 48.7
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.2e-63 247.7 290 50.3
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 3.0e-62 243.0 272 47.1
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 8.7e-62 241.5 295 45.4
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 2.5e-61 240.0 396 38.6
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 7.4e-61 238.4 323 42.7
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 2.1e-60 236.9 311 43.4
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 2.8e-60 236.5 305 44.6
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 3.7e-60 236.1 297 46.1
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 2.4e-59 233.4 288 45.1
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 5.3e-59 232.3 289 45.7
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 3.4e-58 229.6 316 40.8
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 9.9e-58 228.0 369 38.5
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 6.4e-57 225.3 291 45.7
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 3.2e-56 223.0 347 38.6
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 3.2e-56 223.0 392 36.7
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 2.1e-55 220.3 350 42.0
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 2.7e-55 219.9 378 36.8
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 2.7e-55 219.9 380 36.6
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 4.6e-55 219.2 381 36.5
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 4.6e-55 219.2 333 40.2
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 6.0e-55 218.8 380 36.8
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 7.9e-55 218.4 359 37.3
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 1.0e-54 218.0 296 42.6
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 2.3e-54 216.9 307 44.3
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 3.0e-54 216.5 351 38.2
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 6.7e-54 215.3 399 36.3
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 1.1e-53 214.5 277 44.0
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 1.1e-53 214.5 310 44.2
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 1.5e-53 214.2 282 45.4
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.9e-53 213.8 347 37.2
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.9e-53 213.8 298 43.6
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 2.5e-53 213.4 401 35.7
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 4.3e-53 212.6 384 35.2
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 4.3e-53 212.6 386 35.8
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 5.6e-53 212.2 405 35.6
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 9.6e-53 211.5 273 44.0
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 9.6e-53 211.5 348 37.6
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 9.6e-53 211.5 359 37.9
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 1.3e-52 211.1 390 36.7
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 2.8e-52 209.9 386 37.0
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 4.8e-52 209.1 336 37.8
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 4.8e-52 209.1 336 37.8
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 4.8e-52 209.1 370 36.5
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 2.4e-51 206.8 272 45.2
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 3.1e-51 206.5 383 36.0
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 3.1e-51 206.5 355 37.5
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 4.0e-51 206.1 369 35.0
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 5.3e-51 205.7 372 35.8
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 5.3e-51 205.7 365 35.9
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 6.9e-51 205.3 275 42.9
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 1.5e-50 204.1 394 35.3
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 1.5e-50 204.1 393 34.4
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 1.5e-50 204.1 362 37.8
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 4.5e-50 202.6 278 44.2
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 1.4e-48 197.6 382 35.6
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 3.2e-48 196.4 387 35.4
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 3.2e-48 196.4 382 35.3
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 3.2e-48 196.4 403 35.0
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 5.5e-48 195.7 380 34.5
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 7.1e-48 195.3 399 33.8
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 1.2e-47 194.5 396 35.4
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 3.5e-47 193.0 265 43.4
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 4.6e-47 192.6 279 40.1
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 1.0e-46 191.4 394 34.8
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.0e-46 191.4 396 34.1
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 1.3e-46 191.0 352 35.5
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 1.8e-46 190.7 349 35.2
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 3.0e-46 189.9 203 50.7
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 3.9e-46 189.5 409 32.5
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 6.7e-46 188.7 270 42.6
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 6.7e-46 188.7 138 66.7
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 1.9e-45 187.2 138 65.9
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 3.7e-44 183.0 262 41.2
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 8.2e-44 181.8 401 33.2
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 8.2e-44 181.8 405 33.6
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 2.4e-43 180.3 409 32.5
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 3.1e-43 179.9 396 33.1
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 6.9e-43 178.7 391 32.2
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.5e-42 177.6 294 39.1
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 1.5e-42 177.6 393 33.3
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 1.0e-41 174.9 214 48.1
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 1.0e-41 174.9 214 48.1
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 2.2e-41 173.7 194 50.5
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 5.0e-41 172.6 291 38.1
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.5e-40 170.2 205 47.3
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 5.5e-40 169.1 205 46.8
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 4.6e-39 166.0 278 37.4
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 3.0e-38 163.3 381 30.7
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 2.5e-37 160.2 289 36.7
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.1e-35 154.8 291 37.5
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 3.1e-35 153.3 146 56.8
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 9.1e-35 151.8 150 54.7
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 2.0e-34 150.6 199 44.2
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 4.5e-34 149.4 287 36.9
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 5.0e-33 146.0 288 36.8
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 1.9e-32 144.1 303 31.4
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 5.5e-32 142.5 296 33.4
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 6.3e-28 129.0 126 50.8
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.8e-27 127.5 320 30.0
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 5.0e-25 119.4 312 31.1
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 8.8e-22 108.6 166 39.2
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 2.6e-21 107.1 166 38.6
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 1.7e-20 104.4 99 50.5
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 2.8e-20 103.6 107 45.8
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 9.1e-19 98.6 102 48.0
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 2.6e-18 97.1 193 31.1
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 2.6e-18 97.1 113 47.8
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 1.0e-17 95.1 167 35.9
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 1.7e-17 94.4 151 36.4
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 2.9e-17 93.6 138 34.8
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 3.8e-17 93.2 147 38.8
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 9.4e-16 88.6 211 30.3
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.2e-15 88.2 146 36.3
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 2.1e-15 87.4 194 34.0
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 1.5e-13 81.3 101 41.6
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 2.0e-13 80.9 102 40.2
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.2e-10 71.6 115 36.5
COL.COLO4_16251 Corchorus olitorius HOM05D005167 ORTHO05D006312 4.2e-08 63.2 237 28.3
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 5.5e-08 62.8 78 39.7


User provided reference genes

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