Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G009900 Glycine max HOM05D004843 ORTHO05D005833 2.3e-265 918.3 447 100.0
Glyma.12G227600 Glycine max HOM05D004843 ORTHO05D005833 4.1e-198 694.9 518 71.0
Glyma.13G272600 Glycine max HOM05D004843 ORTHO05D005833 2.2e-196 689.1 522 70.5
Phvul.005G067200 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 9.4e-179 630.6 518 62.9
VMungo1080G1831 Vigna mungo HOM05D004843 ORTHO05D005833 2.5e-171 605.9 518 62.0
Lj3g0014260 Lotus japonicus HOM05D004843 ORTHO05D005833 4.5e-165 585.1 527 59.4
Lj1g0026777 Lotus japonicus HOM05D004843 ORTHO05D005833 3.4e-160 568.9 515 60.0
Lalb_Chr25g0286141 Lupinus albus HOM05D004843 ORTHO05D005833 1.3e-143 513.8 497 55.7
Psat5g240000 Pisum sativum HOM05D004843 ORTHO05D005833 1.6e-141 506.9 530 52.8
Medtr2g078390 Medicago truncatula HOM05D004843 ORTHO05D005833 5.1e-140 501.9 537 52.1
TPR.G29644 Trifolium pratense HOM05D004843 ORTHO05D005833 1.8e-137 493.4 530 52.8
arahy.Tifrunner.gnm1.ann1.60B7R0 Arachis hypogaea HOM05D004843 ORTHO05D005833 3.1e-137 492.7 526 52.3
arahy.Tifrunner.gnm1.ann1.G1PXE9 Arachis hypogaea HOM05D004843 ORTHO05D005833 1.5e-131 473.8 510 52.2
QL11p026708 Quercus lobata HOM05D004843 ORTHO05D005833 7.6e-120 434.9 564 44.0
Cfa019615 Carpinus fangiana HOM05D004843 ORTHO05D005833 1.4e-118 430.6 525 46.7
CiPaw.08G115600 Carya illinoinensis HOM05D004843 ORTHO05D005833 1.0e-116 424.5 514 45.3
Dinv20222 Davidia involucrata HOM05D004843 ORTHO05D005833 8.7e-108 394.8 482 45.4
GSVIVG01014249001 Vitis vinifera HOM05D004843 ORTHO05D005833 1.5e-107 394.0 519 42.6
TWI38G0787 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 1.6e-106 390.6 518 42.7
Phvul.005G068700 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 3.1e-105 386.3 371 57.1
Actinidia35229 Actinidia chinensis HOM05D004843 ORTHO05D005833 9.0e-105 384.8 508 43.9
CSS0025192 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 7.6e-104 381.7 523 42.1
TAR627G0485 Trochodendron aralioides HOM05D004843 ORTHO05D005833 6.7e-100 368.6 506 41.9
Duzib268G0207 Durio zibethinus HOM05D004843 ORTHO05D005833 1.1e-97 361.3 514 41.1
Hma1.2p1_0416F.1_g148560 Hydrangea macrophylla HOM05D004843 ORTHO05D005833 3.1e-97 359.8 525 41.5
Sed0025158 Sechium edule HOM05D004843 ORTHO05D005833 2.2e-95 353.6 506 41.7
Oeu024378.1 Olea europaea HOM05D004843 ORTHO05D005833 4.2e-94 349.4 509 38.9
MD03G1237200 Malus domestica HOM05D004843 ORTHO05D005833 5.5e-94 349.0 507 41.2
Prupe.4G172200 Prunus persica HOM05D004843 ORTHO05D005833 7.9e-93 345.1 515 41.4
Ciclev10019192m.g Citrus clementina HOM05D004843 ORTHO05D005833 2.3e-92 343.6 528 39.2
MD10G1064700 Malus domestica HOM05D004843 ORTHO05D005833 2.5e-91 340.1 508 40.6
MSTRG.12883 Avicennia marina HOM05D004843 ORTHO05D005833 3.3e-91 339.7 523 38.8
Nitab4.5_0007508g0020 Nicotiana tabacum HOM05D004843 ORTHO05D005833 5.7e-91 339.0 506 38.7
PGR031G2553 Punica granatum HOM05D004843 ORTHO05D005833 5.7e-91 339.0 514 37.5
MELO3C016086.2 Cucumis melo HOM05D004843 ORTHO05D005833 2.8e-90 336.7 509 38.7
Manes.15G090500 Manihot esculenta HOM05D004843 ORTHO05D005833 2.8e-90 336.7 539 38.4
vmacro09509 Vaccinium macrocarpon HOM05D004843 ORTHO05D005833 2.8e-90 336.7 572 38.1
Oeu061325.2 Olea europaea HOM05D004843 ORTHO05D005833 3.7e-90 336.3 520 37.9
Lj1C835G2 Lonicera japonica HOM05D004843 ORTHO05D005833 1.8e-89 334.0 523 38.2
CsaV3_4G008440 Cucumis sativus L. HOM05D004843 ORTHO05D005833 3.1e-89 333.2 509 38.3
SGA_v2.0_scaffold70G23704 Striga asiatica HOM05D004843 ORTHO05D005833 5.3e-89 332.4 518 38.2
Eucgr.F03287 Eucalyptus grandis HOM05D004843 ORTHO05D005833 1.2e-88 331.3 510 39.6
Gohir.D05G347266 Gossypium hirsutum HOM05D004843 ORTHO05D005833 2.0e-88 330.5 515 38.1
Gorai.009G374700 Gossypium raimondii HOM05D004843 ORTHO05D005833 4.5e-88 329.3 515 38.1
Rhsim04G0023600 Rhododendron simsii HOM05D004843 ORTHO05D005833 7.7e-88 328.6 599 35.4
Cpa.g.sc131.81 Carica papaya HOM05D004843 ORTHO05D005833 1.3e-87 327.8 509 39.7
Gohir.A04G036900 Gossypium hirsutum HOM05D004843 ORTHO05D005833 1.3e-87 327.8 516 38.2
Nn1g06340 Nelumbo nucifera HOM05D004843 ORTHO05D005833 1.3e-87 327.8 504 36.3
CAN.G765.5 Capsicum annuum HOM05D004843 ORTHO05D005833 5.0e-87 325.9 506 37.5
Oeu061997.2 Olea europaea HOM05D004843 ORTHO05D005833 3.2e-86 323.2 503 39.2
SalBow7G4166 Salvia bowleyana HOM05D004843 ORTHO05D005833 2.1e-85 320.5 482 39.8
Sopen12g005870 Solanum pennellii HOM05D004843 ORTHO05D005833 2.1e-85 320.5 496 38.3
CSS0012812 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 3.6e-85 319.7 300 55.0
Cc05_g11520 Coffea canephora HOM05D004843 ORTHO05D005833 1.8e-84 317.4 518 38.0
Solyc12g014090.2 Solanum lycopersicum HOM05D004843 ORTHO05D005833 1.8e-84 317.4 516 37.2
Potri.012G106300 Populus trichocarpa HOM05D004843 ORTHO05D005833 5.1e-84 315.8 524 36.6
RcHm_v2.0_Chr6g0312691 Rosa chinensis HOM05D004843 ORTHO05D005833 5.1e-84 315.8 491 39.9
ClCG07G009890 Citrullus lanatus HOM05D004843 ORTHO05D005833 2.6e-83 313.5 503 38.4
FvH4_3g19060 Fragaria vesca HOM05D004843 ORTHO05D005833 1.3e-82 311.2 492 40.4
DCAR_021007 Daucus carota HOM05D004843 ORTHO05D005833 1.7e-82 310.8 487 37.6
Nitab4.5_0003077g0040 Nicotiana tabacum HOM05D004843 ORTHO05D005833 2.2e-82 310.5 498 38.0
FAN25G1696 Fragaria x ananassa HOM05D004843 ORTHO05D005833 3.7e-82 309.7 492 40.4
RcHm_v2.0_Chr5g0031851 Rosa chinensis HOM05D004843 ORTHO05D005833 5.9e-80 302.4 521 38.6
Aqoxy4G00544 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 6.5e-79 298.9 499 35.7
Thecc.07G102200 Theobroma cacao HOM05D004843 ORTHO05D005833 6.5e-79 298.9 287 53.7
Sabra12G0078800 Salix brachista HOM05D004843 ORTHO05D005833 5.5e-78 295.8 576 34.0
Lsat_1_v5_gn_5_128660 Lactuca sativa HOM05D004843 ORTHO05D005833 3.6e-77 293.1 502 35.9
CiPaw.11G165700 Carya illinoinensis HOM05D004843 ORTHO05D005833 1.4e-76 291.2 477 39.6
EL10Ac4g08285 Beta vulgaris HOM05D004843 ORTHO05D005833 1.5e-75 287.7 519 34.7
Haze_09370 Corylus avellana HOM05D004843 ORTHO05D005833 1.5e-75 287.7 392 43.6
Peaxi162Scf00000g02614 Petunia axillaris HOM05D004843 ORTHO05D005833 4.5e-72 276.2 625 30.4
FAN11G0804 Fragaria x ananassa HOM05D004843 ORTHO05D005833 3.8e-71 273.1 492 37.6
AUR62036128 Chenopodium quinoa HOM05D004843 ORTHO05D005833 5.0e-71 272.7 517 34.6
DCAR_031588 Daucus carota HOM05D004843 ORTHO05D005833 9.4e-70 268.5 481 34.1
Ca_15018_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 2.6e-67 260.4 337 48.7
TWI31G0686 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 7.0e-65 252.3 416 39.4
ECA234G3172 Erigeron canadensis HOM05D004843 ORTHO05D005833 7.7e-64 248.8 416 37.7
Migut.H01969 Erythranthe guttata HOM05D004843 ORTHO05D005833 7.7e-64 248.8 512 31.8
HPP92_010831 Vanilla planifolia HOM05D004843 ORTHO05D005833 6.5e-63 245.7 414 36.7
Sc03g0010280 Simmondsia chinensis HOM05D004843 ORTHO05D005833 7.2e-62 242.3 527 32.4
HanXRQChr10g0302381 Helianthus annuus HOM05D004843 ORTHO05D005833 9.4e-62 241.9 292 44.9
Hund13862 Selenicereus undatus HOM05D004843 ORTHO05D005833 1.2e-61 241.5 293 45.4
Atru.chr2.138 Acer truncatum HOM05D004843 ORTHO05D005833 1.0e-60 238.4 217 53.0
Aa31LG6G6390 Aethionema arabicum HOM05D000944 ORTHO05D003581 1.0e-60 238.4 492 32.9
Thecc.07G102000 Theobroma cacao HOM05D004843 ORTHO05D005833 1.0e-60 238.4 240 50.8
AUR62019511 Chenopodium quinoa HOM05D004843 ORTHO05D005833 1.4e-60 238.0 456 34.4
AUR62026744 Chenopodium quinoa HOM05D004843 ORTHO05D005833 1.8e-60 237.7 457 34.1
PSO832G1805 Papaver somniferum HOM05D004843 ORTHO05D005833 2.3e-60 237.3 523 31.9
PSO210G0781 Papaver somniferum HOM05D004843 ORTHO05D005833 3.4e-59 233.4 521 32.2
Aqoxy7G02743 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 1.1e-57 228.4 260 44.2
THA.LOC104798752 Tarenaya hassleriana HOM05D004843 ORTHO05D005833 1.4e-57 228.0 287 41.8
unitig_26.g10042 Utricularia gibba HOM05D004843 ORTHO05D005833 5.9e-56 222.6 311 41.2
MBI02_g30880_MAGBIO Magnolia biondii HOM05D004843 ORTHO05D005833 1.3e-55 221.5 285 42.8
AL1G61600 Arabidopsis lyrata HOM05D004843 ORTHO05D005833 8.6e-55 218.8 509 31.6
Os06g0244100 Oryza sativa ssp. japonica HOM05D004843 ORTHO05D005833 4.2e-54 216.5 479 29.9
Zm00001eb280030 Zea mays HOM05D004843 ORTHO05D005833 2.1e-53 214.2 477 31.0
Carub.0001s4239 Capsella rubella HOM05D004843 ORTHO05D005833 3.6e-53 213.4 511 31.3
AT1G53200 Arabidopsis thaliana HOM05D004843 ORTHO05D005833 4.7e-53 213.0 303 42.2
CARHR043430 Cardamine hirsuta HOM05D004843 ORTHO05D005833 2.3e-52 210.7 513 30.2
Ca_04025_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 7.5e-51 205.7 301 45.2
Sp1g39780 Schrenkiella parvula HOM05D004843 ORTHO05D005833 2.8e-50 203.8 506 31.0
BcaB02g10938 Brassica carinata HOM05D004843 ORTHO05D005833 1.1e-49 201.8 509 31.0
BolC6t36637H Brassica oleracea HOM05D004843 ORTHO05D005833 1.4e-49 201.4 537 29.6
C06p14590 Brassica napus HOM05D004843 ORTHO05D005833 5.4e-49 199.5 509 30.3
SalBow7G4326 Salvia bowleyana HOM05D004843 ORTHO05D005833 9.2e-49 198.7 383 35.2
BcaC08g44060 Brassica carinata HOM05D004843 ORTHO05D005833 1.2e-48 198.4 509 30.3
A05p18490 Brassica napus HOM05D004843 ORTHO05D005833 1.2e-48 198.4 524 30.0
BraA05t20741Z Brassica rapa HOM05D004843 ORTHO05D005833 1.6e-48 198.0 509 30.5
Thhalv10011326m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 2.9e-47 193.7 300 42.3
Thhalv10028227m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 2.5e-46 190.7 489 30.1
ATR0165G025 Amborella trichopoda HOM05D004843 ORTHO05D005833 2.8e-45 187.2 289 40.1
A06p01130 Brassica napus HOM05D004843 ORTHO05D005833 4.0e-44 183.3 283 38.9
HPP92_010833 Vanilla planifolia HOM05D004843 ORTHO05D005833 2.0e-43 181.0 277 39.7
CDE10G0946 Ceratophyllum demersum HOM05D004843 ORTHO05D005833 7.5e-43 179.1 379 33.5
DCAR_032123 Daucus carota HOM05D004843 ORTHO05D005833 1.7e-42 177.9 162 51.2
Oeu038157.2 Olea europaea HOM05D004843 ORTHO05D005833 1.1e-41 175.3 231 45.9
BolC6t35976H Brassica oleracea HOM05D004843 ORTHO05D005833 6.0e-40 169.5 411 33.3
SEGI_17777 Sequoiadendron giganteum HOM05D004843 ORTHO05D005833 2.1e-37 161.0 310 33.9
BcaC08g43511 Brassica carinata HOM05D004843 ORTHO05D005833 6.2e-37 159.5 304 34.5
C06p08970 Brassica napus HOM05D004843 ORTHO05D005833 2.3e-36 157.5 231 39.8
Thecc.07G101400 Theobroma cacao HOM05D004843 ORTHO05D005833 1.2e-35 155.2 161 47.8
Thecc.07G101600 Theobroma cacao HOM05D004843 ORTHO05D005833 2.9e-34 150.6 161 47.8
Oeu027285.1 Olea europaea HOM05D004843 ORTHO05D005833 9.2e-33 145.6 157 49.7
CAN.G349.3 Capsicum annuum HOM05D004843 ORTHO05D005833 5.8e-27 126.3 220 37.7
BraA06t23340Z Brassica rapa HOM05D004843 ORTHO05D005833 2.9e-26 124.0 167 41.9
Oeu018948.1 Olea europaea HOM05D004843 ORTHO05D005833 6.4e-26 122.9 289 32.2
Pp3c12_9280 Physcomitrium patens HOM05D004843 ORTHO05D005833 4.1e-25 120.2 295 28.1
Mapoly0139s0008 Marchantia polymorpha HOM05D004843 ORTHO05D005833 8.6e-23 112.5 313 29.1
AagrBONN_evm.TU.Sc2ySwM_228.3860 Anthoceros agrestis HOM05D004843 ORTHO05D005833 3.3e-22 110.5 330 26.4
Aa31sc1038G10 Aethionema arabicum HOM05D004843 ORTHO05D005833 9.6e-22 109.0 382 25.4
CAN.G349.2 Capsicum annuum HOM05D004843 ORTHO05D005833 8.1e-21 105.9 143 40.6
Oeu052598.1 Olea europaea HOM05D004843 ORTHO05D005833 1.9e-17 94.7 215 32.1
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 1.3e-15 88.6 58 70.7
Atru.chr2.140 Acer truncatum HOM05D004843 ORTHO05D005833 2.3e-15 87.8 75 52.0
SHI27679 Sapria himalayana HOM05D000105 ORTHO05D000023 6.6e-15 86.3 135 34.1
Thecc.07G102300 Theobroma cacao HOM05D004843 ORTHO05D005833 8.7e-15 85.9 102 43.1
VMungo0540G0880 Vigna mungo HOM05D004843 ORTHO05D005833 9.6e-14 82.4 58 65.5
SHI27676 Sapria himalayana HOM05D004843 ORTHO05D005833 5.4e-09 66.6 157 26.8
Aqoxy7G02744 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 1.7e-07 61.6 62 41.9


User provided reference genes

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